Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <---------ANAC58                                                            <---------ANAC58                                                    --------->ARR11(3)                           <---             <---------GLK1(1)                      --------->GLK1(2)                            <---  <---------YAB1                                    <---------ARR11(3)                          ----- ---------HVH21      ------>ZmHOX2a(2)         --------->RAP2.6(2)                      ----------->GT1 >LBD16  --------->ALFIN1               <-------TEIL<-----------ARR10     --------->MYB52(1)    -----   tgtcatgagaggtggaaatgtgatccaaacttcatgtggaagttcatagccgaaaatctcagccttgccatcgagcaaacggagtctgagaggtgaagta  16004400                                                                       ---------->ID1          --------->GLK1(2)                                  <---------ATHB12 ---MYB46(1)                                                ------>MYB83                          --- ---MYB83<---------GLK1(2)                                  ------>MYB46(1)       --------->GLK1(1) ---->MYB111(1)   <---------ZAT18                         <---------MYB59         <---------GLK1(1)-- ---->MYB59       --------->ZAT18    --------->ZAT14   <------ZmHOX2a(1)      --------->YAB1<--------   ggttgcaattcgattctgagttcgctctgtttctccaacttcactcgtcttatttgaggaccaaacatgttttgtctctatcagatttctcaagaagaca  16004500                                                    --------->At4g35610                                          <---------HSFB2a(2) ------->DOF2                            <---------LBD16 ---------->DOF2 ------->DAG2              ---------->DOF2--------->HSFB2a(2)        <----------DOF2          ------- --ID1                    <---------AHL20(2)     <------ZmHOX2a(1) *TSS                    ------->TEIL   aaaagtttgatgggacttaagttcggatttaaagagttcaatttctggagaggaagatgaaaagtttctaactttgaattccatattccgatgtatcgag  16004600                                                <------NtERF2                                               ----------->RAV1(1)                                               ------>NtERF2                                              <---------DEAR3(1)                                             <---------LBD16                                             --------->At4g35610                                   <-                                          --------->At4g35610                                      --                                <---------AHL20(2)                                                 <-                  --------->ANAC58        --------->ZAT2                                          ---                  --------->ANAC46        <---------At4g35610                                   <----        <-----------HVH21       --------->AHL20(2)                                       <------NtERF2      --------->HSFC1(2)       <---------AHL20(1)                                       ------>NtERF2      <---------HSFB2a(1)      --------->AHL20(2)                    ---------->ID1    --------->DEAR3(1)      <---------HSFC1(2)       --------->AHL20(1)  --------->ANAC58  <---------CCA1(2) <---------ANAC46      --------->HSFB2a(1)      <---------AHL20(2)  --------->ANAC58<---------ANAC58    <---------DEAR3(1) -->HSFB2a(2)     --------->ANAC58        <---------ZAT2           <---------ANAC58 --------->ANAC46   aattacgaagcgtcgcattcaaggaagaaagaatttatttagatagctgcggcacaaaactccattctttcgtctctctcatgtaaacggcgtcgtttta  16004700                <------NtERF2               ------>NtERF2              <---------ANAC46              <---------DEAR3(1)         --------->MYB52(1)      --------->ANAC58      --------->ANAC58                      --------->ATHB12 --------------AGL15               --------->YAB1 ------------->AGL15               <---------ICU4                                *TSS<---------AHL20(2) --------DAG2 --------->DEAR3(1)  <---------ATHB12        <------------CBF   <-----------GT1 -------------->AG                --------->ICU4  <---------ANAC58           --------->MYB52(1)    -- -------GT1 ------->GAMYB       --------->YAB1    <---------ANAC58   --------->MYB52(1)         <----   gccttatgaagcaacggcgtcgttttggtatctctaatcatcatcttcatttgcttctcaaattgagaacttaagggtttaacggatttattttggtcat  16004800                        <---------TOE2(3)                        <---------TOE1(3)                       <---------DOF5.7(2)                      ----------->TGA1                                                          -----    <---------GLK1(2) ----------->HVH21                          <---------ANAC46           <-------- --------->YAB1       --------->WRKY12           ---------->DOF2 <---------ANAC58           --------- ----->TEIL          --------->DOF5.7(2)       <------ZmHOX2a(2) <---------ANAC58          --------->GLK1(1) -----YAB1         <---------MYB46(3)        <------ZmHOX2a(1) <---------YAB1              <---------GLK1(1)   gaatcagagtctttgcaatagtcgttgacgttagaattcgataagtaggatcaaagttcggaattttgagtgtgtaatgagcttgaatttggcaaatcct  16004900                                                                                 <---------RAP2.6(3)                                                <---------KAN4(2)                ------>NtERF2                                            <------ZmHOX2a(1)                   --------->DEAR3(1)                                      <------ZmHOX2a(1)                         <---------ETT(1)                                   <-----------RAV1(2)           <----------DOF2----------->HVH21        ------>ZmHOX2a(1)          --------->YAB1                <---------------AGL15----------->GT1 ->ZmHOX2a(1)           <---------ANAC46   ----------->GT1 <---------ALFIN1     --------->RAP2.6(2) -ARR14(2)       <----------DOF2  <---------ATHB12    <---------At5g28300     --------->At4g35610 >ARR14(2)  ---------->DOF2     --------->WOX13(1)   <-----------GT1          <---------At4g35610   gtatgggttcctgtaaaagctttgttatgtagaacaatcaggagaaggagaattttcactgccactgctataactagtttagccgacaaggtaaaaactt  16005000                                                                      --------->DAG2                <                                                                     ---------->DOF2                <                                                           <---------ANAC58                         <                                                           <---------ANAC58                       <--                                                           <------MYB46(1)                     <-----                                                           <------MYB83--------->DAG2      <---------ZAT18                  --------->GLK1(2)                       <---------MYB46(3)               --------->ZAT18                 <---------ARR14(2)                   <---------MYB46(3)          <------ZmHOX2a(1)<-        <---------AHL20(2)<----------DOF2             <-----------RAV1(1)     ---------->DOF2<-------   cgcttagtaatttatagcagtttctgttctttgtttgttttgttttgtctgaattgttgttgggttcttaaaaaagggggaaaaggatgagagtgagctt  16005100           <---------AtMYB61         <---------MYB46(3)         <------MYB46(1)         <------MYB83        <---------AtMYB61     ==========================RAV     <---------MYB46(3)     <-----------RAV1(1)     ============================RAV   <-------GAMYB  <---------MYB46(3) <---------At4g35610  --------->MYB111(2)--------->At4g35610  --------->MYB55(2) ----------->RAV1(2) ---------ANAC58     <---------ZAT2 ---------ANAC58     --------->ZAT2 -------GAMYB --------->ALFIN1 -------AtMYB61    <-----------RAV1(2) -----DOF2 --------->ALFIN1              <---------ICU4     <---------At4g35610                     < --------MYB46(3) <---------At4g35610   --------->ICU4      ----------->RAV1(2)         --------->DAG2 --At4g35610<---------MYB46(3)        --------->WOX13(1)    --------->At4g35610        ---------->DOF2   ttggttgttgttggtggtggagcagctggagtttatggagcaattagggctaaaactctctcacctgatttgagagttttggttattgaaaaagggagtt  16005200                                                                                                    -             <---------GLK1(2)                                                                      <            <---------At4g35610                                                                    <-           ----------->ARR10                                                            --------->ATHB12           --------->MYB52(2)                                                           --------->YAB1      <---------TOE2(3)                             <---------At4g35610          --------->MYB52(2)<-      <---------TOE1(3)                ----------->GT1                           <---------MYB46(3)-- ----------DOF2       <----------DOF2<---------MYB52(1)  <---------YAB1        <---------MYB52(1)  --   ttctttctaaggttagcttctcttctttccattaactcagttagtgaaatagagagatgatttttgttcattcgttttctcgtttgttattcataggtga  16005300  Previous    Next  AGI:  At5g39930.1    Description:  similar to pre-mRNA cleavage complex family protein [Arabidopsis thaliana] (TAIR:AT3G04680.2); similar to pre-mRNA cleavage complex family protein [Arabidopsis thaliana] (TAIR:AT3G04680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14899.1); contains InterPro domain Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655) Range:  from: 16002253    to: 16004567    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g39940.1    Description:  oxidoreductase. similar to unnamed protein product [Vitis vinifera] (GB:CAO14889.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain HI0933-like protein (InterPro:IPR004792) Range:  from: 16004781    to: 16007929    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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