Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->LBD16          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <---------LBD16 <---------At4g35610 <-----------TGA1                                         <-----------RAV1(1) --------->At4g35610 <-----------HVH21<--                                  <---------ARR14(2)       <---------WRKY38(1)  --------->ANAC46  ---                                  --------->ARR14(2)       <---------WRKY45     --------->bZIP60(2)      <-----------GT1         --------->ANAC46<---------ANAC46     ------>ZmHOX2a(1)        <-------- ------ANAC46                 --------->ANAC58<---------ANAC58    --------->TOE1(3)       <---------- --->ZAT14   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <-- ----ZAT14  <---------ALFIN1  --------->ANAC58<---------ANAC58    --------->TOE2(3)     <---------TOE2(3)   agtgtatattacctccaactcgaattcaacacaaggaatccacttgttgcggagaaggtagtcaacttccttagccaattcaacgtcactaaggtcaggg  15398900                                         <---------ALFIN1                                     <------NtERF2                     ---------->DOF2                                   <---------RAP2.6(2)           <---------ICU4                                 <------MYB46(1)                 --------->YAB1                                 <------MYB83                    -------->ATHB1                     -                                --------->MYB55(2)              --------->ICU4              <-------- ----MYB83                      <---------AtMYB61               <---------ATHB12           --------->ICU4 -------->GT1                   <---------MYB46(3)              <---------ATHB51       --------->ZAT18 ---RAV1(2)                   <---------MYB52(1)        <---------GLK1(1)           <---------At4g35610 -HVH21 <---------GLK1(2)   <---------YAB1      --------->AHL20(2) <---------YAB1   <-------GAMYB   < ----MYB46(1)           <----------DOF2<---------ALFIN1 --------->ARR14(2)          --------->At4g35610   aggtaagatagagtctcaaacttcttctttccgattggtggccacacctataaattcgaattcccaattattctaaagtattgttcagttgcactaattg  15399000                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                -----                                                                                                <----                                                                                               <-----                                                --------->ZAT6     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<                                            <---------MYB52(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           --------->At4g35610    <---------YAB1               <-----                                           --------->ZAT2     <---------ANAC46                <------                      --------->YAB1       <---------At4g35610<---------ANAC58             <---------ANAC58 ----------->HVH21  <---------YAB1--------->TOE2(3)           <---------ANAC58             <---------ANAC58 ------>MYC3       --------->TOE2(3)      ------->TEIL     <---------MYB52(1)       <-----------RAV1(1) -ICU4---------->DOF2 <---------ICU4   --------->AtLEC2   <-------GAMYB             <---------MYB46(3) -------MYC3     <---------YAB1   --------->TOE1(3)    ------>ZmHOX2a(1)          <-------GAMYB<-----   cacatgacaaaagacagttttcattaatgacatttaccttcatgcagctaactcttcctccgttgcttgtgatggaagtaatgtcgttgttggccttgcg  15399100       ---------->DOF2                                            <------MYB83    --------->LBD16                                               <------MYB46(1)   <---------LBD16                                              <--------P  <---------LBD16                                             <------NtERF2  <---------ANAC46                                           <---------LBD16       <---------ANAC46 ------->WRKY38(1)                                           --------->LBD16    --------->ALFIN1 --------->HVH21                                            <---------LBD16     <---------AtMYB61 ---------HVH21                                             <---------ANAC46 <---------DEAR3(1) ---->LBD16                                                <---------LBD16  --------->At4g35610 -----MYB46(3)                 --------->At5g28300         --------->ATERF1(1)<---------MYB46(3) ----ANAC58                   --------->LBD16        <---------ANAC58       <---------At4g35610 ---------WRKY18(1)          <---------DEAR3(1)      <---------ANAC46   ------->GAMYB<------ZmHOX2a(1) ----ANAC58               --------->ANAC46           <---------ANAC58   --------->AtMYB61          -- ---LBD16               ---------->DOF2             <------NtERF2 ----------->GT1<---------MYB46(3)-- ----ANAC46     --------->At4g35610               <---------RAP2.6(2)  --------->MYB46(3)        <---   ggtgaccgggaaagaagcggatgacttcaagccggtgaatggagcgaccatggtggcttgagccggggaggtaaccacagcggtggaggagaacatagag  15399200                                                                   <---------MYB46(3)                                                                   <------MYB83                                                                   <------MYB46(1)                                                                  <---------AtMYB61                                                                 <---------MYB52(1)                                                                 *TSS            --------->AHL20(2)                                                                <-------GAMYB  <----------DOF2-------                                                               <-----------RAV1(1)            <------                                                               <---------MYB46(3)<-----------TBP                                <----------DOF2          <---------ANAC58      <---------------AGL15    <---------MYB52(1)       ==================================================================MADS_MADS ------->ANAC58              --------------->AGL15       <---------ANAC58     <---------ICU4--------- ------->ANAC58       <------------------------ANAC81<---------ANAC58        --------->ICU4 <-------- ---ZmHOX2a(1)       <-----------GT1                 <---------ANAC58     ---------->ID1   <---------PCF2   gaagccattacttcttcttgttgtttctcttcttcttttggtttttctcttacttacttgtttgtctgttggttttgtcatctttatatagtgggaaccg  15399300                      ---------->DOF2             --------->DOF5.7(2)       --------->ALFIN1                    <---------YAB1      --------->YAB1    ----------->RAV1(1)       <---------MYB52(2)  <---------PCF5         <---------MYB52(1)<---------TOE2(3)  --------->ANAC46--------->YAB1        <---------ICU4<---------WOX13(1) --------->DAG2 -->MYB46(3)      -------->HAHB4       <---------YAB1<------------CBF  ---------->DOF2 -----------AGL1 --------->ICU4 --------->ICU4  ----------->GT1     <---------TOE1(3) >ARR14(2)       <---------ATHB12    --------->YAB1 --------->MYB52(2)<------ZmHOX2a(1) -ARR14(2)    --------->ICU4------>NtERF2  <---------DOF5.7(2) <------ZmHOX2a(1)      <---------DAG2   ctagaggcaactagccctaatgatcaaaggggccataattcatgataacgtcgttaattgccacaggattaaggaaaggtgttgacacccttatcgattt  15399400                   --------->ALFIN1                  ------->MYC2                  <-------PIF5                  ------->PIF5                  ------->MYC3                  <-------MYC2                  <-------MYC3                 <---------ANAC55(2)                 <---------ANAC46                 <---------ANAC58                 --------->ANAC55(2)                 <---------ANAC58                 ======================================bZIP_DOF                 <---------TGA1a                 --------->TGA1a                 <---------O2                 --------->O2                 <---------bZIP60(2)              <------ZmHOX2a(2)             <---------ARR11(3)             --------->ARR11(3)                                                                     <       ==============HOX2a_HOX2a            <----------DOF2   <------ZmHOX2a(1)                     <       --------->YAB1                   <---------CCA1(2)    <------MYB83<---------AtLEC2         <--       <------ZmHOX2a(1)            <---------ARR11(3)       <------MYB46(1)             <---------ALFIN1 --------->ZAT6 ------------>OsbHLH66 --------->TOE2(3)    <--------P <---------------AtSPL3     ----   ggaccactaggataagatcacgtggcagaaaactccataatcttatctttctcatgtaagggtaggagtgaatgtgtatggctactggtctccacttgat  15399500                                          <---------GLK1(1)                         <---------AHL20(2)                                          --------->CCA1(2)                         --------->AHL20(2)                                         --------->ARR11(3)                        --------->AHL20(2)         ---------->ID1       <------NtERF2                                        <---------AHL20(2)    <----------DOF2         <---------ANAC46                                    --------->ATHB12   <---------ANAC58         ----------->GT1                                     -------->HAHB4   <---------ANAC46        <------NtERF2 <---------ARR11(3)                     ----------->GT1   <---------ANAC58        --------->RAP2.3(1)              <-----------GT1    <---------YAB1 ---------MYB52(1)         --------->ATERF1(1)          <---------DAG2         --------->ICU4    ---- --------P                <---------ATERF1(1)           <----------DOF2    --------->AHL20(2)    <--- -------MYB46(3)         <---------DEAR3(1)--------->MYB52(1)              <---------AHL20(2)    ---- -->ZmHOX2a(2)<----------DOF2<-----------HVH21----------->GT1          --------->AHL20(2)     <------   cggttgcttttggctcctttcaattgggaggcgtcaaattgtagatatcggttaaatactttttacatatagattaaaaaaatgattaaatttctattac  15399600                                                  --------->YAB1                                               --------->YAB1     <-----------GT1 <---------AHL20(2) --------->YAB1                                              < ----->TOE1(3)      <---------YAB1      --------->TOE1(3)                                           - ------DAG2  --------->YAB1             --------->TOE2(3)                                 ---------->DOF2 ----->TOE2(3)     <---------AHL20(2) --------->GLK1(2)      --------->YAB1            --------->AHL20(2) -----GT1   <-------TEIL  <-----------GT1     <---------AHL20(2)    --------------------->WRI1  <----   cttatattaacacattcatatttttatttttccacttgataatcttaaataataagaatataagtataatctttgaattcatcccacattttaaaagtat  15399700                                                                                                   <-                                                                                                <<<<<                                 --------->ATHB12                                               <----                                <---------YAB1                        <-----------GT1     --------->ZAT6 <---------AHL20(2)       ----------->GT1                          <---------AHL20(2)    <------ZmHOX2a(2) ---------AHL20(2)  --------->YAB1                               --------->ICU4  --------------->AtSPL8 -------->AHL20(2)--------->AtLEC2         ----------->GT1       <---------YAB1  <---------------AtSPL3 -----YAB1     <-------TEIL     <---------AHL20(2)          <---------ZAT6       <---------------AtSPL8   aattaaatcagacagagttcattcaaaatggtttttaattgggaaatgtaaactagtattttgtgttattattttctatgtagtatgtacgatcactaga  15399800  Previous    Next  AGI:  At5g38420.1    Description:  ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B). Identical to Ribulose bisphosphate carboxylase small chain 2B, chloroplast precursor (RBCS-2B) [Arabidopsis Thaliana] (GB:P10797;GB:Q9FF20); similar to ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) [Arabidopsis thaliana] (TAIR:AT5G38430.1); similar to Ribulose bisphosphate carboxylase small chain F1, chloroplast precursor (RuBisCO small subunit F1) (GB:P27985); contains InterPro domain Ribulose bisphosphate carboxylase, small chain; (InterPro:IPR000894) Range:  from: 15398175    to: 15399265    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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