Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------YAB1 -------->HAHB4 --------->YAB1 <---------ICU4 --------->ATHB12                                                                      <---------WRKY38(1) ---------YAB1                                                             --------->LBD16     ------ -------->ICU4                                                           <---------LBD16 --------->At4g35610 ----->HAHB4                                                         <-----------RAV1(1) <---------At4g35610 ------>YAB1                                                  <---------ARR14(2)       <---------WRKY45 -------ICU4                                                  --------->ARR14(2)     <xxxxxxxxxxxxxxx ----->ICU4                                               --------->ANAC46<---------ANAC46    ------- --->YAB1             <----------DOF2--------->ZAT6       --------->ANAC58<---------ANAC58    ------- ---AHL20(2) ---------->DOF2      <-----------GT1         --------->ANAC58<---------ANAC58    -------   taatgattagtagacaaaagaaaacttttgtgtttattacctctaactcgaattcaacacaaggaatccacttgttgcggagaaggtagtcaacttcctt  15395200          --------->TGA2(2)         <-----------HVH21         <-----------TGA1        --------->TGA1a        --------->O2        <---------O2        <---------TGA1a        --------->bZIP60(1)        --------->ANAC46        <---------bZIP60(1)        --------->bZIP60(2)                                                                         -       <-----------STF1   <------MYB46(1)                                   --------->YAB1         -- >ZmHOX2a(1)              ----------->GT1                            <---------ALFIN1              <- xxxxxxxxxsmallRNA(fl3)   <------MYB83                           <------NtERF2   --------->LBD16  --- -->TOE2(3)       <-----------HVH21                 <----------DOF2<---------ALFIN1  --------->ARR14(2) -------------->WRI1<-----------RAV1(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -->TOE1(3)     <---------TOE2(3)   <---------GLK1(2)          <---------RAP2.6(2)   <---------ARR14(2)   agccaattcgacgtcactaaggtcagggaggtaagatagagtctcaaacttcttctttccaattggtggccacacctataatccccaaatccaattccaa  15395300                                                                        <---------MYB52(2)                                                                       --------->ZAT2          <---------TOE1(2)                                   --------->TOE2(3)          <---------TOE2(2)                                <-----------GT1               --------->MYB52(2)         ------>ZmHOX2a(1)                             --------->ARR11(3)    <xxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------AHL20(1)                                  <---------ARR11(3)   --------->ZAT6<---------ANAC58   --------->ARR11(3)              ---------->DOF2    --------->YAB1   <---------At4g35610<---------ANAC46   <---------ARR11(3)         ----------->HVH21      <---------YAB1    --------->At4g35610<---------ANAC58 -------->AHL20(2)           ------->MYC3           <---------TOE2(3) ------->TEIL       <---------MYB46(3) ------->AHL20(2)            <-------MYC3          --------->YAB1  --------->AtLEC2    <---------MYB52(1) --------AHL20(2)        <---------ZAT18      <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>AHL20(2)    <---------AHL20(2)        <---------YAB1  --------->TOE1(3)       <-------GAMYB   attaatatatcctatgttttgttttattgcacatgacaaaagacagtttttattgatgatattaccttcatgcagctaactcttcccccgttgcttgcga  15395400                                                                                          <------NtERF2                                                                                          <----------                                                                                         --------->LBD16                              <---------ANAC46                                           <---------LBD16                           ----------->HVH21                                            <---------LBD16                        <---------MYB46(3)                                              <---------ANAC46                       <---------ANAC46     --------->At4g35610                        --------->ATERF1(1)                       <---------ANAC58   <---------ANAC46                             <---------LBD16                       <---------ANAC58  <---------At4g35610                          <---------ZAT2                      <---------LBD16    --------->At4g35610                          --------->ZAT2                <------MYB83  <---------LBD16                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                <------MYB46(1)<---------LBD16             --------->At5g28300   ----------->RAV1(2)               <---------AtMYB61--------->LBD16           --------->LBD16        <---------ANAC58              <--------P--------->LBD16  <---------LBD16 <---------DEAR3(1)      <---------ANAC46   -           ------>ZmHOX2a(1)<---------WRKY18(1)       --------->ANAC46           <---------ANAC58   -      <---------bZIP60(1)  --------->WRKY38(1)      ---------->DOF2             <------NtERF2      --      --------->bZIP60(1) <-----------HVH21<---------MYB46(3)                 <---------RAP2.6(2)<---   tggaagtgatgtccttgttggtcttgcgggtgaccgggaatgcagcggatgacttcaagccggtgaatggagcgaccatggtggcctgagccggggatgt  15395500          <------NtERF2          --------->ATERF1(1)        --------->ALFIN1        <---------ANAC46        <---------DEAR3(1)       <------NtERF2       <---------LBD16       --------->ATERF1(1)      <---------RAP2.3(1)     <---------RAP2.3(2)     <---------DEAR3(1)    --------->At4g35610    <---------At4g35610 -----------WRI1                 <---------ICU4                                               <------ ------>GAMYB              --------->ANAC58                      <---------ANAC58<---------ANAC58 -------->AtMYB61          --------->ANAC58                 <----------DOF2      <---------ANAC46   - ------->MYB46(3)        <------ZmHOX2a(1)           <------------------------ANAC81       ------>ZmHOX2a(1) --------GT1 <------ZmHOX2a(1)  --------->ICU4   <-----------GT1 <---------ANAC58<---------ANAC58   <   aaccacagcggcggaggagagcatagaggaagccattactacttcttgttgtttctcttcttcttttgctcgtttacttactgacttgttttcctactgg  15395600                 --------->YAB1                                      <---------ICU4         --------->AHL20(2)                                          --------->YAB1                 -       <----------DOF2               --------->DAG2                 <---------YAB1               <---      <---------ICU4                ---------->DOF2       <-------TEIL  <---------DOF5.7(2) <------ZmHOX2a(1)     --------->ICU4           --------->DAG2  *TSS ---------->DOF2--------->YAB1       ----------->RAV1(1) -----RAV1(1)<---------AHL20(2)  <----------ID1  <---------YAB1  <-------TEIL     <---------At5g28300 -------->bZIP60(1)          ---------->DOF2  --------->ICU4 <---------ATHB12  --------->DOF5.7(2) <- ---------bZIP60(1)         ---------->DOF2   <---------YAB1 <---------YAB1  <---------ANAC46    <---   tgttgtcatctttatataatgagaaccccctaaaggcgaaaagccctcatgatcaaagggtccatgattcatgataacgtcgtttactgccacaggatta  15395700                                                --------->ALFIN1                                               <-------PIF5                                               ------->MYC3                                               <-------MYC3                                               ------->PIF5                                               ------->MYC4                                               <-------MYC2                                               ------->MYC2                                              --------->TGA1a                                              --------->O2                                              <---------O2                                              <---------TGA1a                                              <<<<<<<<<<HY5                                              --------->bZIP60(2)                                              >>>>>>>>>>HY5                            ------->TEIL      ======================================bZIP_DOF                            ----------->RAV1(1)<-------MYC4                           --------->ANAC46   --------->PIF3(3)             <-----------------AGL1 <------ZmHOX2a(1)     --------->ALFIN1    --------->ANAC58     <---------bZIP60(2)  --------->DAG2         --------->ANAC58    <<<<<<<<<<AtbZIP1           <----------DOF2 --------->DOF2         --------->SPL7  --------->DAG2           --------->ARR11(3)<---------ANAC46 ------TOE1(3)        <---------SPL7--------->YAB1               <---------ARR11(3)--------->ALFIN1 -----ZmHOX2a(1)    --------------->AtSPL3 ---------------->PIF3(2)  <---------CCA1(2)<---------ANAC46 ------TOE2(3) <---------DAG2 <---------ALFIN1<---------PIF3(3)<---------MYB52(1)<-----------RAV1(1)<   aggaaaggtgttgacacccttatcggtacgcaccactaggataaggccacgtggcagaaaactccattatcttatcttttctcttgtgggggaaatgaag  15395800                                  <----------DOF2        <---------MYB52(1)       <---------ANAC58        --------->ARR14(2)       <---------ANAC58                                    <---------AHL20(2)        <---------ARR14(2)       <---------ANAC46         ---------->DOF2            --------->AHL20(1)       <-------GAMYB          <---------MYB52(1) <---------MYB52(1)                  --------->AHL20(2)       --------->At5g28300    <--------P       <---------ANAC58               --------->TOE1(3)     <      <---------MYB46(3)    <---------MYB46(3) <---------ANAC58               --------->TOE2(3)<-----   --------->ALFIN1<---------ALFIN1    ---------->ID1  <----------ARF1--------->ANAC58      <-------- ---------------AtSPL3     ------>ZmHOX2a(2)<----------DOF2           --------->ANAC58<---------AHL20(2)   tgaatgtgcggttactggtctccacttgatcggttgcttttggctcctttcgtttgggagaaaagaaaccagacgcattaccttaaatttaatgcttttg  15395900                              --------->AHL20(2)                              <---------AHL20(2)                                           --------->AHL20(2)                             --------->AHL20(2)   <----------DOF2                          <---------AHL20(2)                          --------->ATHB12    <----------DOF2                      <-----------GT1 ----------DOF2          <---------YAB1    --------->ZAT6             --------->AHL20(2)  <---------AHL20(2) ----AtMYB61     <---------At5g28300  <---------ANAC58      --------->MYB59     --------->YAB1 <----- --DOF2         <-----------GT1       <---------ANAC58      <---------TOE2(3)----------->GT1   ------   gtcttttggacctcttatttaccatgtatgatttaatttggcttaacactttctttggaaataaggtcgcattaaaaaatagttataacaaaattattta  15396000                           --------->ARR11(3)                 --------->AHL20(1)                 <---------ARR11(3)                 --------->AHL20(2)                 <---------AHL20(1)                                                         <--------                 <---------AHL20(2)                                                     <----------DOF2           --------->TOE2(3)     <-----------GT1           ------->GAMYB             <-----------GT1        <---------AHL20(2) <---------ARR11(3)             --------->MYB46(3)         <---------AHL20(2)     <---------ICU4       --------->YAB1        ---------->DOF2                   <---------AHL20(2) ----AHL20(2)    --------->ARR11(3)  --------->LBD16    <-----------GT1         <---------YAB1 --->AHL20(2)   --------->AHL20(2) <---------LBD16   <----------DOF2     <------------------------ANAC81   aatttgatatttacataaatatattgtatgatatttatccggacaaaaaaaaaagctttaaccatctccaatatttgtttctattattttctttctgaat  15396100  Previous    Next  AGI:  At5g38410.1    Description:  ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B). Identical to Ribulose bisphosphate carboxylase small chain 3B, chloroplast precursor (RBCS-3B) [Arabidopsis Thaliana] (GB:P10798;GB:Q9FF21); similar to ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) [Arabidopsis thaliana] (TAIR:AT5G38420.1); similar to Ribulose bisphosphate carboxylase small chain, chloroplast precursor (RuBisCO small subunit) (GB:P08135); contains InterPro domain Ribulose bisphosphate carboxylase, small chain; (InterPro:IPR000894) Range:  from: 15394403    to: 15395646    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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