Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->AHL20(2)                                                              <---------AHL20(2)                        ----------->GT1                     <---------WOX13(1)                ----------->GT1                           --------->ATHB12                <------MYB46(1)                      --------->AHL20(2)                --------->ANAC55(2)                  --------->AHL20(1)           ----------->HVH21                         <---------AHL20(2)         <---------At4g35610                         <---------YAB1         --------->At4g35610                        --------->AHL20(2)                            <-- <----------DOF2<---------ANAC55(2)            <------ZmHOX2a(2)                    <---------ANAC55(2) -----AtMYB61   <------MYB83                  --------->ARR11(3)                    --------->ANAC55(2) -------ANAC81 --------->MYB59                <---------ARR11(3)                    <---------ANAC46   ggtctttgtttagctgataggtaatattgtaacatttgtattctctaagatcaattttattgatttatattttgttaatgtgtgttatgtgagtttattg  15322800                                    <---------AHL20(2)                                --------->AHL20(2)                                <---------ATHB51                                        --------->AHL20(2)                                --------->ICU4                                          <---------AHL20(2)                               <---------AHL20(1)                                      <---------AHL20(2)                            --------->AHL20(2)                                         --------->AHL20(2)                         --------->YAB1            <---------ICU4              -------->HAHB4                      ----------->GT1<---------AHL20(2)                        --------->ATHB12                  --------->YAB1<---------AHL20(2)--------->ICU4              --------->ICU4  -------                 <---------ATHB12   --------->AHL20(2)         <---------AHL20(2)      --------->AHL20(1) -------YAB1   --------->WOX13(1)<---------ICU4 --------->YAB1--------->AHL20(2)       <---------AHL20(1)   atgaataagttccaattcaatcaacagttataaaataattaaatatgaaataaaaattagccaaattaatccatgttgaaatgatggaatttatttggcc  15322900                                --------->ANAC55(2)                                <---------ANAC46                                           ==========                                ----------->GT1                                            <------ZmHOX2a(1)                                <---------ANAC55(1)                                      <---------TOE2(3)                                <---------ANAC55(2)                <------ZmHOX2a(2)     <---------TOE1(3)                               <-------TEIL <-------GAMYB          ===============================HOX2a_HOX2a                             --------->ARR14(2)                  ------->GAMYB      --------->ATHB12                      <---------AHL20(2)   ----------->GT1      --------->MYB46(3) --------->ICU4                      --------->AHL20(2)   <---------MYB46(3)  ------>MYB83        <---------YAB1                   --------->YAB1       <---------MYB46(3)     ------>MYB46(1)   <---------ICU4                 --------->AHL20(1)    <---------YAB1         --------->MYB52(1) -------->HAHB4                 --------->AHL20(2)  --------->YAB1          --------->TOE2(2)   --------->YAB1                --------->YAB1--------->CCA1(2)              --------->TOE1(2)  --------->ICU4         ----------->GT1     <---------ARR14(2)             --------->MYB46(3)  <---------ATHB12        ----------->GT1--------->WOX13(1) <--------P        <---------MYB52(2) <---------TOE2(3)----- --->ID1<---------MYB46(3)   <---------GLK1(2)              <---------MYB55(2)--------->YAB1    <----   taaacatggatgggtaaaaaataataaatcagatacgtataatggttgttaaaacaaaacaaaccaacgatcagatagattaatgatgattaaggaaatt  15323000                              --------->ANAC46                              --------->ZAT6                              <---------ALFIN1                            <---------ALFIN1            --------->TGA2(2)                          --------->TCP23             --------->ANAC55(1)                         <---------TCP20              --------->ANAC46                         --------->PCF2               --------->ANAC58                         <---------TCP15(1)           --------->ANAC58                  <-----------GT1   <---------------AGL15      ----------->GT1         <------ZmHOX2a(2)--------->TCP15(2)     <---------MYB52(1)      <---------ETT(2)  <---------PCF2          <-------GAMYB---------->DOF2                --------- <---------At5g28300    <-----------HVH21   ------------>MYB.PH3(1)                        ---------- ===============HOX2a_HOX2a ----------->RAV1(1) <-----------HVH21    ---------->DOF2    --------->TOE2(3) ---->AHL20(2) <---------ARR11(3)  ----------------->AGL1 --------->ANAC58     ----------->GT1 -----AHL20(2) --------->ARR11(3)  ----------------->AGL3 --------->ANAC58    ----------->GT1 -------   aatgaccgtcgatcaaagatttactgggtcccacactaccaaaataagaccgttagacgtaagcaaagaaaaaaagaagaagggtaaaatcgtcaacaga  15323100                                                                                        <---------ARR11(3)                                                                                        --------->ARR11(3)                                                                                        <---------ARR14(2)  --------->GLK1(2)                                          <---------AHL20(2)         --------->ARR14(2)  <---------ARR11(3)                                    <---------YAB1         --------->ANAC46  --------->ARR11(3)                              <----------DOF2---------->DOF2  ----------->RAV1(1) >At4g35610  --------->GLK1(2)               --------->GLK1(1)*TSS             --------->ANAC58 ->RAV1(1)  <---------GLK1(2)          <---------MYB52(1)   --------->AHL20(2) --------->ANAC58    -- >GAMYB ---------->DOF2               <-------GAMYB   <-----------GT1  <----------DOF2  --------->GLK1(2)   agaaaatctctaaagaatctctctaatttttctatgagaccgttgagaaaccctttttaccattaaataaagtctttttgcaaacaacaaaatctggtta  15323200                                                       --------->ARR14(2)                                                       <---------ARR14(2)                                                      <------NtERF2                                                     --------->LBD16                                                    <---------ANAC46                                                    <---------ANAC58                                                    <---------ANAC58  <---------ETT(1)              <                                                   <---------LBD16 --------->ARR14(2)               -                                      <---------AHL20(2)      --------->TOE2(3)                     <                                      --------->AHL20(2)  <---------AHL20(2)                        <              <----------DOF2        --------->AHL20(2)<-----------ARR10         --------->MYB46(3)<- ------->TOE2(3)                ------>ZmHOX2a(2)<---------DEAR3(1)<---------ARR14(2)             ---   accaaaatagctctctcttttactgaagaagtgatcgaattttattcaacgatggcggatataatctcaaatccgaccatggaacaactcttcttctctg  15323300  ------>ZmHOX2a(2) --------->ARR14(1)                   --------->ANAC46 --------->CCA1(2)                  <---------ALFIN1                                        --------- <------ZmHOX2a(2)                  --------->ANAC58                          ---------->DOF2<-------TEIL ---------ARR14(2)                  --------->ANAC58                     <---------GLK1(2)  --------- -------->ARR14(2)                <---------ALFIN1                       <---------ARR14(2)<---------ARR11(3) ---------AGP1                  ------>NtERF2                            --------->ARR14(2)--------->ARR11(1) ---------ARR11(3)              ----------->RAV1(1)                    --------->LBD16     --------->ARR14(2) --------GLK1(1)               <---------ETT(1)                      <---------LBD16       <---------ARR14(2) -------->ARR10                --------->ANAC46                 --------->ARR14(2)       --------->ANAC46   tagatccgatgtctcttatactctctcaaaactccgacacacatcaacttaaactcttgttagacggtttctccggattcgaaagaggtccaagatacga  15323400                        <---------HSFC1(2)                        --------->HSFC1(2)                        --------->HSFB2a(1)                        --------->ZAT2                        <---------ZAT2                        <---------HSFB2a(1)                       <-----------ARR10                                                           --             <---------ANAC46        <---------ANAC55(2)                                           --             --------->ANAC55(2)     --------->ANAC55(2)                                 <------ZmHOX2a(2)             <---------ANAC58        ----------->GT1              <----------ID1       <------ZmHOX2a(1)             <---------ANAC55(1)--------->ANAC58             <------ZmHOX2a(1)      --------->LBD16-- >ARR14(1)   <---------ANAC55(2)--------->ANAC58             ===================================HOX2a_HOX2a >CCA1(2)    <---------ANAC58 <---------AtLEC2          ------>ZmHOX2a(1)          --------->DEAR3(1)   tgaatactcgagattacgtgaatcgaagcttcgcatgaaacgtgattttcagaaattcctcgaggaagaagacgaagtagaagagccgaggatcaaaaaa  15323500             --------->At5g28300            ----------->GT1       <-------TEIL      --------->CCA1(2)     <---------ARR14(2)     <---------GLK1(2)     --------->ARR14(2)    <---------At4g35610    --------->At4g35610                                                  <------MYB83   ----------->ARR10                                                     <---------MYB46(3) ------->ANAC58          --------->ARR14(2)                 >>>>>>>>>TBF1<------MYB46(1) ------->ANAC58          <---------ARR14(2)          --------->LBD16     <---------DEAR3(2) ------->ANAC46     ----------->GT1 ----------->GT1<---------LBD16      <---------DEAR3(1)   caagtcagattcgagggtaattctgtaaattcgcaagaaggtgataagttttctccggagaagaagaaacagagtcggttcgagggtatttcagtaattt  15323600                                                                           <---------ANAC55(2)                                                                           <---------ANAC55(1)                    <------NtERF2                                          <---------ANAC58                   --------->LBD16                                         <---------ANAC46                  --------->DEAR3(1)                              --------->DAG2                    -                 <---------LBD16                                 ---------->DOF2                <----         <------MYB83                                     --------->At4g35610                <-------         <------MYB46(1)                                  <---------At4g35610      <---------MYB52(1)      --------->ARR14(2) ----------->GT1                  --------->LBD16  <---------ANAC58 <--------      <---------ARR14(2)--------->DAG2                  <---------LBD16    --------->ANAC55(2)  -----   cacaagaagataggttttcgccggagaaggtgaagaaacagagtcgatttgggttttctccgctgaaaaaagctgttccgtcttcgttggcacaatcagt  15323700  Previous    Next  AGI:  At5g38290.1    Description:  peptidyl-tRNA hydrolase family protein. Identical to Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplast precursor (CRS2A) [Arabidopsis Thaliana] (GB:Q9FKN4;GB:Q8GX67); similar to peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G16140.1); similar to peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G16140.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO49346.1); contains InterPro domain Peptidyl-tRNA hydrolase; (InterPro:IPR001328) Range:  from: 15320728    to: 15322776    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g38300.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67035.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61843.1) Range:  from: 15323162    to: 15324238    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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