Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                   <---------ICU4                                                        --------->YAB1                   --------->YAB1                                                       <---------ATHB12                  --------->ICU4                                                      --------->WOX13(1)                  <---------YAB1                                               --------->AHL20(2)                --------->YAB1   <---------ANAC58            --------->TOE2(3) --------->AHL20(1)               <---------YAB1    <---------ANAC58    --------->ANAC58          <---------AHL20(2)    --------->ANAC58  --------->YAB1               ---------->DOF2             <---------AHL20(1)    --------->ANAC58 <---------YAB1<---------CCA1(2) --------->ANAC58     <---------ATHB12 <---------YAB1   atgaacaagaaaaacatatcataatcataaaactggcttatcttctaactcaaacaagcactagcttaatgacccaaacaataaatttcaatcaaaattg  15001400                   ----------->GT1                 --------->ZAT14                 --------->REM1(2)                 <---------ZAT14                           --------->YAB1            --------------->AGL15                         <---------ATHB12          -------->P                                    --------->WOX13(1)                <------ZmHOX2a(2)       <---------At4g35610         <-------TEIL    --------->WOX13(1)        --------->At4g35610 -ICU4 --------->At4g35610   ---------->DOF2     <---------ATHB12    <---------At4g35610 <---------ARR11(3)   caattttagagctacccagtgtagaaaaacacaaaggctcatgagaaacaaatcaatccaatcagattgagagctaatcagataaaccctagatcactta  15001500                                                              --------->YAB1                      <--                                                           ------>ZmHOX2a(1)                      ---                                                       <---------ARR11(3)                         ---                                                      <---------CCA1(2)                           <--                                                   ------>ZmHOX2a(2)                              ---                                                  ================HOX2a_HOX2a                     ---                                                  <------ZmHOX2a(2)                              <---                                                 --------->ARR11(3)                              <---                                                 <---------ARR11(3)            --------->ATHB12  <---                                                 <---------AGP1            --------->ICU4        ----                                   --------->ATHB12===============HOX2a_HOX2a <---------YAB1   ------    --------->GLK1(1)     --------->YAB1         --------->AGP1          --------->YAB1--------->ANAC58    <---------GLK1(1)<---------ATHB12           <---------CCA1(2)<-----------GT1       --------->ANAC58   cgagggaaatctatagttctcaaatcaaacataacatcgattgaaaccctagatctatatcctatattaacctagtcatagttattgaaacgaaaactaa  15001600         --------->ANAC58   <---------ANAC58   <---------ANAC55(1)   <---------ANAC58   <---------ANAC46 -------ICU4 ------>ATHB12 ------>ATHB51 ------ATHB1                          --------->ANAC58 ------>YAB1                          --------->ANAC58 ----->HAHB4                          <---------ANAC55(2)          --------->ANAC58 ------YAB1                      --------->WOX13(1)            <---------MYB46(3)           >>>>>>>>>TBF1 ------ATHB51             --------->ANAC58                --------->ANAC58               >>>>>>>>>TBF1 ------ATHB12--------->At4g35610<---------AHL20(2)        --------->ANAC58            >>>>>>>>>TBF1 ----->ICU4  <---------At4g35610--------->AHL20(2)     --------->ZAT18       --------->CCA1(2)      - --->YAB1--------->ANAC58 --------->ANAC58    <---------MYB46(3)   --------->ANAC58>>>>>>>>>TBF1   <-   taattgcgtgcaagcagatgagaatagaacgaaattaatcaagtaagatggttcaagagcacgaatggttcgcaagaagatagaagaagaagaagaagaa  15001700                   --------->ARR14(2)            --------->CCA1(2)  --------->HSFB2a(2)  <---------HSFB2a(2)                                                                             <--  --------------->AGL15                                                       <----------DOF2    <---  <---------------AGL15  --------->SPL7                                   <------ZmHOX2a(1)     <---- -------->MYB52(1) <---------ARR14(2)                           <---------TOE2(3)               ----- ----------GT1     --------->GLK1(2)                            <---------TOE1(3)         <---------ANAC46   attaccagaagaagagatgagaatccgaacgagagagagattgaagaagatggagagactgtgtttagggttttgaggagctttgatgagttttgtgttc  15001800                                                                                        --------->YAB1                                                                                        --------->AHL20(2)                                                                                        -------->HAHB4                                                                                       <---------YAB1                                                                                       --------->ICU4                                                                                      <-----------TBP                                                                                  --------->ANAC55(2)                                                                                  <---------ANAC55(2)                                                         <----------DOF2          ----------->GT1                                                  --------->CCA1(2)               <---------ANAC58 -------MYB52(1)         <---------At4g35610     <---------ARR14(2)        ------------>CBF ----GAMYB <------ZmHOX2a(2)         --------->ALFIN1  <---------ANAC46   <------ZmHOX2a(1)   <------ -----MYB46(3)           --------->At4g35610----------->GT1           <--------P  <---------ANAC46 ---->MYB52(2)     <---------GLK1(2)*TSS  <------ZmHOX2a(1)   --------->ZAT6      <---------ANAC58   gttgattttttagatcagacagaatttagcagagaagggatggaggaagaaaatatggggtttaagtctagggtaaggacaatttcgtaattatagaaca  15001900                          --------->HSFB2a(1)               <-----------GT1                          <---------HSFC1(2)       <---------WOX13(1)                          --------->HSFC1(2)      <---------ANAC58               ---------->ID1                     <---------ANAC58                             ------             <---------ANAC58                    --------->ATHB12                              ------             <---------ANAC58                   <---------YAB1                               ------->TEIL    ----------->GT1   --------->YAB1        <---------GLK1(2)<---------TOE2(3)            --------->ICU4 ---ZAT18  <-----------GT1<---------HSFB2a(1)   <---------AHL20(2)         >>>>>>>>>>>>>>>>>LFY<-----   cttagaaggttattttcgtctctatcgaaatttcgaaattcaaatagaatttgattgccaatttacgatgtactagagaccattgttttgaaatgaatat  15002000                                                 --------->LBD16                                                <---------ANAC58                                                <---------ANAC46                          <---------AHL20(2)                                        ------>NtERF2                     <-----------GT1 --------->AHL20(2)                                       --------->LBD16        --------->ARR11(1)          --------->AHL20(1)          <---------ZAT14            --------->LBD16          <---------ARR14(2)          <---------AHL20(1)         <----------DOF2             <---------LBD16        ----------->ARR10            --------->AHL20(2) --->AHL20(1)                   <-----------GT1<---------LBD16--------->ARR14(2) xxxxxxxxxxxxxxxxxxxx --->ARR11(3)        --------->ZAT6<---------LBD16------>NtERF2   <------MYB83<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----AHL20(1)     --------->ZAT14  ------->GAMYB<---------ANAC58  <------MYB46(1)<---------AHL20(2)   tttgcaaacgactttactagtatacactagaatttaacccgcgggcaatcgcgggcaatcggtagatttggtttttatactaaatatttgaataaatttg  15002100                      --------->ARR11(3)                 <---------AHL20(2)           <---------YAB1                            --------->ATHB12        --------->AHL20(2)     <---------YAB1       <---------YAB1                             <-----        <---------AHL20(2)   --------->ATHB12    <---------AHL20(2)                        --------->ZAT14       --------->AHL20(2)   --------->ICU4       <---------AHL20(1)                --------->ATHB12    <---------AHL20(2)<---------ARR11(3)         --------->AHL20(1)    --------->ATHB12    <---------ZAT14   --------->AHL20(2)--------->RVE1(1)     --------->YAB1             <---------YAB1 <---------WOX13(1)  <---------AHL20(2) --------->CCA1(1)     ----------->GT1            <---------ATHB51  <---------ANAC46 xx>smallRNA(si3)--------->AHL20(2)      --------->GLK1(2)     <---------YAB1     <---------YAB1  <--   atattttaaatttataaatataaatatctagtgattagtgaagaatcgtaatatatgatttggatattatcgattattgattttgtgattgagtatagtg  15002200                                                                                                  <xx                                                                                               xxxxxx                                                                                             xxxxxxxx                                                                                       --------->AHL20(1)                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                                                                                       <---------YAB1                                                                                      --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                  <---------AHL20(2)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  --------->AHL20(2)                                                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     ----------->RAV1(1)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    --------->ANAC58                 <<<<<<<<<RAP2.2xxxxxxxxxxxxxxxxx                                    --------->ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <---------YAB1          <----------DOF2     <---------TOE2(3) <---------AHL20(2) ----ZAT6        --------->YAB1     <----------ID1          <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------DOF2   <---------YAB1      --------->ANAC46   ----------->GT1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ttttagggatggaatgtgatcatattttgatttcaaaaacgacataaattctttattttgttaaacggtttagattgaagggaattaattttattgaacg  15002300  Previous    Next  AGI:  At5g37720.1    Description:  RNA and export factor-binding protein, putative. similar to RNA and export factor-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G66260.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80452.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 14998868    to: 15001836    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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