Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                   --------->MYB46(3)        <-------TEIL                                                              <------ZmHOX2a(2)      --------->GLK1(1)                                                          --------->AGP1<----- <---------At4g35610    <---------WOX13(1)                                       <---------ARR14(2) <---------LBD16  --------->ZAT2                                                 --------->ARR14(2) ------->DOF2     <---------At4g35610                                            --------->ARR11(3) ------MYB52(1)   <---------ZAT2                           --------->HSFB2a(2)   <---------ARR11(3) -->AGL15         --------->At4g35610    <---------YAB1    <---------HSFB2a(2)  --------->At4g35610 --->AGL3  <---------YAB1            <----------DOF2   <---------GLK1(2)        <---------At4g35610   ttaagcggagttcattatcgagctggattgctctcgcctctttgttattgcgaaattgattctcgacccaaatgtctcttgcagatccaccagttttgaa  14603700                                                                                                    <                                                                                      --------->ETT(2)                                                                                      <---------ETT(2)                                                                                      ----------->HVH21                                ---------->DOF2                                    <---------ANAC46<-                             <---------ANAC58                                    <---------DOF5.7(2)-                             <---------ANAC58                                  --------->DOF5.7(2) <-                             <---------ANAC46                                  <---------MYB52(1)  <-                         <-------MYC2                       <---------ANAC58  --------->TOE2(3)    --                         ------->MYC2             ------>MYB46(1)             <-------GAMYB        --                         ------->MYC3             --------->ANAC58            =======================                        ===================bZIP_DOF         <---------ANAC58 ------>ZmHOX2a(2)     <-                        --------->TGA1a           --------->ANAC46          <------ZmHOX2a(2)      <-                        ===================bZIP_DOF      <----------DOF2   --------->ARR11(3)      ==                        <---------TGA1a           --------->ANAC58         <---------ARR11(3)   ----- --YAB1               --------->MYB52(1)          ------>MYB83             --------->ARR14(2)   ----- ----AtLEC2  <-------TEIL<-------MYC3        <---------WRKY18(1)           <---------ARR14(2)  ------   tgaactatggaagagttcatgagccaacgtgccgtagagccagagtttgaccaagccatctttcttggtccattgaagatcgttagcgtcgacagggacc  14603800          <-----------RAV1(1)      <------NtERF2      <---------------------WRI1     <---------RAP2.6(3)     ------>NtERF2    --------->ATERF1(2)    <---------ANAC46    --------->DEAR3(1)   --------->DEAR3(2)                                         --------->ANAC58 -------PIF5                                                  --------->ANAC58 --------O2                                                 <-----------RAV1(2) ------>PIF5                                             <---------TGA1a --------bZIP60(2)                                       --------->TGA1a --------ANAC58                                          --------->ANAC46 ------->O2                                              --------->ANAC58 ------->TGA1a             ========================================bZIP_DOF ========MYC_MYB           ---------->DOF2               --------->ANAC58 --------ANAC58     <------ZmHOX2a(1)            --------->GLK1(1) --------TGA1a <---------ANAC58                  <---------GLK1(1) =====================================bZIP_DOF  --------->ARR14(2)               <------NtERF2 ---->DEAR3(1) <---------ANAC46                 <---------ARR14(2)             <---------MYB46(3) ------>HVH21  <---------ANAC58                <------ZmHOX2a(1)  <------NtERF2<---------DEAR3(1) --->DEAR3(2)--------->ZAT18            --------->ATHB12 --------->O2      <---------AtMYB61 --------   gacgtgccgtcgatgtggcctaggacatcaaaagtaagacaatgagtgaggaaatgctcacgccaggcatcgtagttgtggtcgtcggaatcgagaatca  14603900                                        ---------->DOF2                               --------->CCA1(2)                               <------ZmHOX2a(2)                         --------->GLK1(2)                              --------->ARR11(3)                <---------AHL20(2)                              <---------ARR11(3)                --------->AHL20(2)                              <---------ARR14(2)                --------->AHL20(1)                              --------->ARR14(2)               --------->AHL20(2)   <---------SPL7                              --------->AGP1              <----------ID1 --------->ARR11(3)                             <---------GLK1(1)            ----------->GT1<---------ARR11(3)                             --------->GLK1(1)          ---------->DOF2 --------->RVE1(1)         ---                           <------ZmHOX2a(1)       ----------->GT1  --------->AHL20(2) --------->ANAC58 ->GLK1(2)               <---------TOE2(3)      --------->MYB52(1)  <---------AHL20(2) --------->ANAC58   aggggatgtgagattgggtaagggattaaggagatccaaaatcaaagaaaaaacagaaaaaagaaaaaaattaaaaatcttctgtttgtacgcatagggg  14604000                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                          --------->ANAC46                             ----------->TBP                                        --------->AtMYB61                        --------->ARR11(3)                                       --------->MYB46(3)                        <---------ARR11(3)                         <-----------RAV1(2)                                    --------->RVE1(1)                       <-----------HVH21<---------ALFIN1                        <---------CCA1(1)              <---------ANAC46       <-----------GT1                            --------->CCA1(1)            --------->ZAT14        <-------TEIL                                 <---------RVE1(1)            <---------ZAT14    <------NtERF2                                    --------->GLK1(1)           <---------REM1(1) ----------->HVH21                                  <---------GLK1(1)           --------->ALFIN1--------->At4g35610                   *TSS      ---------->DOF2     ------       <-----------RAV1(2) <---------At4g35610                --------->YAB1   --------->ARR11(3) ------>GLK1(1) <---------ZAT6------>NtERF2                   --------->TOE2(3)<---------ARR11(3)  <-   aactcgaacccaggtgtagtggaagagtcaggcgacgttcaaccactcgactaagacataccattcttaactatgtgaaaagatatcttatatatacacg  14604100        --------->At5g28300               <---------DAG2        <-------GAMYB                 --------->ZAT18         --------->ATHB12       ----------->GT1                --------->ZAT14      <---------ANAC58    --------->MYB52(1)                <---------ZAT14      --------->ANAC55(2) --->ANAC58                           <---------ZAT18      <---------ANAC46 --->ANAC58                      <---------ZAT14           <---------ANAC58      xxxxxxxxxxxxxxxxxxxx --->ANAC55(1)                   --------->ZAT14           <---------ANAC55(1)  xxxxxxxxxxxxxxxxxxxxx --->ANAC46                      --------->REM1(2)         <---------ANAC55(2) <xxxxxxxxxxxxxxxxxxxxx --->AtLEC2                 <---------At5g28300  ---------->DOF2        <---------DAG2 -------------OsCBT        <-----------GT1<----------DOF2<-----------GT1<----------DOF2   <----------DOF2   caaaacccacggttaaattttagagaatattacagtgtagagcacttttttaaaagtatttacgtgattagacacttttcaaggagtaggcactttgtat  14604200                                                                                                    <                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   <x                                                                                                  xxx                                                                                                 <xxx                                                                                                 xxxx                                                                                                 <xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                <----                                                                                                -----                                                                                                xxxxx                                                                                                <----                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                            xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                               <---------MYB46(3)                                          xxxxxxxxxx                               ----------->GT1                                            xxxxxxxxxxx                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             xxxxxxxxxxx               <---------At5g28300                                                        xxxxxxxxxxx               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------DAG2                     xxxxxxxxxxx              <-----------GT1  xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxx        --------->ANAC55(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <xxxxxxxxxxx      <-----------GT1<---------AHL20(2)       <---------CCA1(2)                         xxxxxxxxxxxxx xxx>smallRNA(s2)    --------->AHL20(2)       ---------->ID1       <----------DOF2   <xxxxxxxxxxxxxxx xx>smallRNA(le3)  <----------DOF2       xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxx xxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   gggcaattttacttatttaccctttaattacatcggttacaatctcttgtctctctcctttttctatctcttttttttcttcagaaaacacaaaatccag  14604300               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ATHB12            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------MYB46(3)          <--------P         <-------GAMYB        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------MYB46(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       <---------YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------YAB1    <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxx>smallRNA(i2) -----At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ---->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(le3) -----LBD16xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxsmallRNA(i) xxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxx>smallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxx>smallRNA(i2)                         ------->TEIL xxxxxxxxxxxxx>smallRNA(le3)                       <---------ALFIN1 xxxxxxxsmallRNA(i)                               --------->At4g35610 xxxxxxxxxxxxx>smallRNA(s2)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxx>smallRNA(i)                            <---------ARR14(2) xxxxxxxxxxxx>smallRNA(i2)                    --------->ARR11(3) xxxxxxxxxxx>smallRNA(i2)                     --------->GLK1(2)                                     < xxxxxxxxxxxxx>smallRNA(l2)                   <---------ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <- xxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->YAB1                         xxxxx xxx>smallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ARR14(2)   ---------->ID1       <---------AHL20(2) xsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ZAT14<-----------RAV1(1)  --------->ANAC55(2) xxxxxxsmallRNA(l2)          <-----------GT1 --------->RVE1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<   cggaagatgatggttgatgggtttgctagaattacaacttggtttaaaaatctgcaccctgataattttgttgtctatgtgtttattcatgtaattgtag  14604400                                                                                     ------>ZmHOX2a(2)                                                                                     xxxxxxxxxxxxxxxx                                                                                    <------ZmHOX2a(2)                                                                                   --------->AGP1                                                                                   <---------ARR14(2)                                                                                   --------->ARR14(2)                                                                                   <---------AGP1                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)              ---------->DOF2                                                     <---------CCA1(2)            --------->TOE2(3)                                                    xxxxxxxxxxxxxxxxxxxx    <---------ANAC58                                                          --------->STY1(2)    <---------ANAC58                      ---------->DOF2                     <---------STY1(2) ---------ANAC58       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         <---------ARR14(2) ------TEIL <---------MYB59            --------->TOE2(3)            <---------ARR11(3)    <---------GLK1(2) xxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->TOE1(3)            --------->ARR14(2)  <xxxxxxxxxxxx ---------ANAC58   <-------TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i) <x   tttcatgcgttctacctaaagttcattcaattgctccaaaaccttaaagtttgcagttttttttcttccagttcttcacttgctagatcttagaatttca  14604500                                                                   <---------REM1(1)                                                                 <---------ANAC58                                                                 <---------ANAC58                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)             <--------                                                              <---------GLK1(1)            xxxxxxxxxx                                                              --------->GLK1(1)           <xxxxxxxxxx                                                             <---------ARR14(2)         ------>ZmHOX2a(2)                                                             --------->ARR11(3)        <------ZmHOX2a(2)                                                             <---------ARR11(3)       <---------ARR11(3)                                                             --------->ARR14(2)       --------->ARR11(3)             <---------------AtSPL8                         ===================================HOX2a_HOX2a     --------->AHL20(2)                                     ==================================HOX2a_HOX2a xxxxxx>smallRNA(s2)                                        <------ZmHOX2a(1)      --------->LBD16 xx>smallRNA(le3)     ---------->DOF2          ----------->HVH21 <---------ANAC46  ------>NtERF2 xxxxxxxxxxxsmallRNA(i2)                    --------->TOE1(2)<---------AGP1       --------->RAP2.6(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      --------->ZAT18----------->HVH21       --------->ANAC46   gagaccataaaatatgaagaacaaaaaagaagaaagaataagtgaacgagcgaccgagtgaaggatctcgtgtagcagtagaagccgcgatctcgtttct  14604600  Previous    Next  AGI:  At5g36937.1    Description:  transposable element gene. copia-like retrotransposon family, has a 7.2e-09 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 14603358    to: 14604065    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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