Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    ----------->RAV1(1)   <---------MYB52(2)                                 --------->AtMYB61 --------->ANAC58                                --------->MYB46(3) --------->ANAC58                              --------->AtMYB61   ------>NtERF2                             --------->MYB46(3)  <---------ANAC58                           <---------ARR14(2)  ------>NtERF2                           --------->ARR14(2) --------->DEAR3(1)         ------->GAMYB                      --------->YAB1        --------->At4g35610        -------->P                   --------->WOX13(1)       <---------At4g35610        ------>MYB46(1)                --------->TOE2(3)<---------ALFIN1<---------ANAC58      ------>MYB83          --------->YAB1--------->ANAC46  --------->MYB46(3) ------->GAMYB          <<<<<<<<<TBF1  --    --------->ANAC46 <---------ATHB12    <---------At5g28300--------->MYB46(3)   <<<<<<<<<TBF1     --   ccctctcagccatcttaacatcaatcacagaaccaccaccattaaccgctgccgagccagtaaccacattaccaacaggcttcttcttcttcccataaac  14052200                                       -------->P                                       ------>MYB83                                       ------>MYB46(1)                                     <---------MYB59                                 ------->GAMYB                              ----------->RAV1(1)                             --------->MYB46(3)                        --------->ANAC46                      --------->At4g35610             --------->At4g35610--------->MYB46(3)           <---------ICU4--------->At4g35610                        --------->At4g35610       <------          <---------ATHB12 ----------->RAV1(1)                      ------>ZmHOX2a(1)     --------->TOE2(3) ------->At4g35610  --------->YAB1   <---------MYB111(1)      ------>ZmHOX2a(1)     ------->GAMYB --------->RAV1(2)  <---------ICU4 --------->AGP1     <----------DOF2            ----------->RAV1(1)   catctgaaacccatcatctccatcatcagcaacaacagacctaccaatttccttctctttcttcctaatcctctgaaactcatcaacagaaacatcaaat  14052300                                              --------->ANAC55(1)                                              --------->ANAC58                                              --------->ANAC55(2)                                              --------->ANAC46                                              --------->ANAC58                                             <-----------STF1                                 <---------ATHB12                                --------->ARR14(2)                   --------->ANAC58       <----------TaMYB80                   --------->ANAC46  <---------LBD16                   --------->ANAC58 ------>ZmHOX2a(1)                   --------->ANAC55(2)   ---------->TaMYB80                   --------->O2 ------>MYB83 <-------TEIL          --------->HSFC1(2)         -------                   --------->ANAC55(1) --------->LBD16          <------ZmHOX2a(1)            <-------             <---------ICU4     ------>MYB46(1) --------->TGA2(2)  <---------HSFC1(2)       <--------          --------->YAB1        <---------ARR14(2)             --------->ANAC58     <---------ALFIN1    <---------ATHB12    --------->ANAC55(2)<---------ARR14(2) --------->LBD16<---------GLK1(1)-------  --------->WOX13(1)    <---------ANAC55(2)--------->ARR14(2)<-----------RAV1(2)   --------->LBD16 ---CCA1(2) <---------YAB1   --------->MYB46(3)<-----------TGA1--------->ANAC58    --------->ANAC46--   ctctcaatcaattcatcattcacgttacataaccaatcctccgcatatacgtcatcaacatcgccaggaaacttcatcgatttcccccaaacttgctcgg  14052400       <---------MYB46(3)       --------->MYB52(2)     <---------ARR14(2)       ------>ZmHOX2a(2)      --------->ARR14(2)      <------ZmHOX2a(2)  <---------ANAC46                                               <---------ARR11(3)   --------->MYB46(3)    <---------ANAC58                                               --------->GLK1(2) -->ANAC58               <---------ANAC58              --------------------->WRI1       --------->ARR11(3) --LBD16              <---------WOX13(1)             <---------ANAC58              ----------->GT1 -ANAC46<-------GAMYB<---------ANAC58                <---------ANAC58            ----------->GT1 -->ANAC58           <---------ANAC58         --------->ATHB12                  --------->DAG2 ------->MYB46(3)   --------->ATHB12<---------MYB52(1) <-------GAMYB           ---------->DOF2   aatcaccgatcgttgcaagagttgattgcgaggttccagttatctcatcgattgggcgtttgaactcatcgaaattgtagtaaaagtgaaaatctctact  14052500                                                               --------->AHL20(2)                                                        --------->TOE1(2)                                                       <---------HSFB2a(1)            ------>MYB46(1)                                                       <---------HSFC1(2)             ------>MYB83                                                       --------->HSFC1(2)      <----------DOF2      <                                                       --------->MYB46(3)--------->LBD16  --------->ANAC46                                              ---------->DOF2  <---------AHL20(2)<-----------GT1 ----   cgttggaattaggcgagaagacgatgagagtctcgagagagtcgaagagaaagaagaaccatcgattaatttctccagagactttaccttccaagagact  14052600                                                   <---------ARR11(3)                    <---------At5g28300<---------At4g35610                     --------->GLK1(1)                    <---------DOF5.7(2)--------->At4g35610          <---------YAB1       <---------DEAR3(1)              --------->LBD16            ----------->GT1        <---------ANAC58       --------->DEAR3(1)        <---------ARR11(3)--------->ARR11(3)          <---------GLK1(1)       --------->ETT(2)<-----------HVH21   <---------------------WRI1       <---------TOE2(3) ---------MYB46(3) <-----------GT1   <---------LBD16<------ZmHOX2a(2)  <----------DOF2   <---------ANAC58 ------->GT1 <-------TEIL       <---------ICU4 ---------->DOF2  <------------CBF<---------ARR14(2)   ggtgattcgtcgacgtccatgttaccgtcgctcattatctccgctggagaaaagatcaaatcagagaattgtgattttagggtatctctgggcttggcta  14052700                                                                               <---------MYB52(1)                                                                              ----------->GT1                                                                              --------->LBD16                                                                    ----------->GT1                                                                    <---------ANAC55(2)                                                                    --------->ANAC55(2) --------->AHL20(2)                                                                    --------->ANAC58    <---------AHL20(1)                                                                    --------->ANAC58    <---------AHL20(2)                                                                --------->ANAC58    --------->AHL20(2)                                                      --------->ANAC46    --------->ARR14(2)                    --------->YAB1                   --------------->AGL15<---------ARR14(2)     <---               ------------>CBF     --------->At4g35610         --------->ANAC58    <---------AHL20(2)           <---------YAB1           <---------At4g35610  --------->MYB52(1) <---------LBD16   -------      <------ZmHOX2a(1)         --------->ALFIN1     <---------------AGL15--------->ARR11(3)  <------   gggttttaggaacattattcaatgagaaactactgtggagctgttttagtatatacacttaagggcaagaacgtaatatccggtatttaattaattctag  14052800                         <---------AHL20(2)   <-----------GT1                     <---------AHL20(2)   <---------RVE1(1)                 <---------AHL20(2)       <---------CCA1(1)             <---------AHL20(2)          <---------ARR11(3)           ----------->TBP               --------->ARR11(3)                                         -          --------->AHL20(1)          <---------TOE1(3)                                             <          <---------AHL20(1)    <---------RVE1(1)                                                   -         --------->AHL20(2)    <---------GLK1(2)                                                    <    ----------->GT1  --------->AHL20(2) <------ZmHOX2a(1)                                           < ---ZmHOX2a(1)   --------->AHL20(2)   <---------TOE2(3)        --------->AHL20(2)                   < -->HSFB2a(2)----------->TBP   --------->ARR11(3)  <-----------------AGL1                           - ---HSFB2a(2)--------->AHL20(2)<---------ARR11(3)------>ZmHOX2a(1)                                 <-   gatatatcgaaatatataaatatttattttaaagatttttaaggatatttcctactcgtttgggataaattagctactccaaaaccaaaaattagcaaat  14052900          <------------CBF         --------->ATHB12   <----------DOF2  ------>ZmHOX2a(2)                                               <---------ARR14(2) <------ZmHOX2a(2)                                            <---------ANAC46 -------->ARR11(3)                                           <---------MYB46(3) ---------ARR11(3)                                           <------MYB46(1) -------->AGP1                                               <------MYB83 ---------ARR14(2)         ------------>CBF                 <---------MYB46(3) ---------AGP1            --------->TOE2(3)                 --------->ALFIN1 -----------ARR10--------->ARR14(2)                        <--------P -------->ARR14(2)     <---------GLK1(1)                 <---------MYB46(3) --------CCA1(2) <---------ARR14(2)        --------->YAB1--------->ATHB12   cagatctttgttcattgcatatatgaaatctcaatatttatgcaatgacaaattccaaatggttgggggattcaaaaaactcaactagttagacgaattc  14053000                       <-------TEIL                 --------->ANAC58                                 >>>>>>>>>RAP2.2                 --------->ANAC46        ---------->DOF2        <---------ARR11(3)                 --------->ANAC58      <---------AHL20(2)      <---------CCA1(2)    <---------ETT(2)         --------->AHL20(2)     --------->ZAT6          ----------->GT1   <----------DOF2   <--------   aaacaattcaactaattagacgaaattcatactcacactatataaaaggttttgaaaatggatatatatctaaactctttgttctctcgacaaaaaaaca  14053100  Previous    Next  AGI:  At5g35910.1    Description:  3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein. similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G54440.1); similar to Nucleolar protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53938.2); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain 3'-5' exonuclease; (InterPro:IPR002562); contains InterPro domain Helicase and RNase D C-terminal, HRDC; (InterPro:IPR002121) Range:  from: 14046916    to: 14052635    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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