Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------ARR14(2)                                            --------->ARR14(2)                                          --------->LBD16                              <-----------GT1                  <---------ANAC46       --------->ANAC55(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------LBD16                            <---------YAB1 -->ANAC58       <---------LBD16  <---------DAG2                                <---------ARR14(2) -->ANAC58   <---------------AtSPL8<----------DOF2                        <-----------GT1  <--------- >CCA1(2)    <---------------AtSPL3<---------DAG2  <-------TEIL--------->MYB59  --------->ARR14(2)   aaatacactcagaaaatagtacgggtatgaaaatacccttttcccgtatttgatacatgtctaattcggttcaaataaaccgaatatgaaaattttcagt  13743600                                                             ------>MYB46(1)                               -------->P                    --------->MYB52(1)                               ------>MYB83                  ------>MYB83                               ------>MYB46(1)             <---------MYB59                             ------->GAMYB                --------->DEAR3(2)                <---------AHL20(2)                      --------->MYB52(1)           <---------LBD16               --------->AHL20(2)                       ------>MYB46(1)      ----------->GT1               <---------AHL20(2)                       ------>MYB83   <---------AHL20(2)        ----           --------->AHL20(2)--------->DEAR3(1)       <---------MYB59  --------->AHL20(2)     -------         ----------->GT1    --------->MYB46(3)     ------>NtERF2----------->GT1  <---------AHL20(2)   <---------LBD16          --------->DEAR3(2)    ----------->HVH21   --------->AHL20(2)  --------->ANAC58 --GT1  ----------->GT1   --------->MYB52(1)      <---------ETT(1)    <---------AHL20(2)  --------->ANAC58   tttatttcggaagttaaataaatctagataaccgacctgaaaaacccgagtcccgaccgaaccgaaccgaaattaaattcggtttaattcggaagcattt  13743700                                                       --------->GLK1(1)         <---------ANAC58                                              <---------ARR14(2)                 <---------ANAC46                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->O2                              ----------->HVH21        <---------GLK1(1)    --------->TGA1a                              --------->ANAC46--------->ARR14(2)            <---------O2                          <-----------GT1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ANAC58 ---------->DOF2 ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------TGA1a ------------->AGL2     <---------KAN4(2)<-----------GT1                    ========================= -->GLK1(1)     ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <-----------GT1       <------   ccaaaaaccgaaattccctaaaaccgaataacccgacccgattaaaccgatttgccgaactcccaggcctaaattcacacttggcttagaaaaactcttt  13743800                                              <-----------RAV1(2)                                              --------------->AGL15                                           <-----------GT1                                        -------->ATHB1                                        -------->HAHB4                                        <--------HAHB4                                        --------->ATHB51                                        --------->YAB1                                        <---------ICU4              --------->At5g28300      <---------ATHB51      --------->AHL20(2)               <---------ATHB12        --------->AHL20(2)               -----   ----------->GT1                     <---------YAB1          <---------AHL20(2)            --------  ----------->GT1     <-----------GT1  --------->ICU4  ---------->DOF2           ----------->HVH21 ====bZIP_DOF----------->GT1   ---------->DOF2======================================================= ----DOF2   --------->MYB59   --------->AtMYB61 --------->At4g35610    ---------->DOF2       <-------   gtagatgttaaaattcggtaaaattaacctcaccaaagctaattattaccaggtgaagaaagcattaaaatttcaaagtgtgtatgacagaggttttaga  13743900                                       <---------GLK1(2)                                       <---------ARR11(3)                                       <---------ARR14(2)                                       --------->ARR14(2)          ------->TEIL                 --------->ARR11(3)                                           -        <---------SPL7             --------->YAB1                               <---------ZAT14    <-      <---------------AtSPL8       ---------->DOF2                             ----------->RAV1(1) <-      <---------------AtSPL3  --------------->AGL15             <-----------ARR10    ---------->DOF2- ----->DOF2                   <---------------AGL15             --------->GLK1(2)--------->ZAT6    <- ->HSFB2a(2)               ------->GAMYB      --------->At4g35610           --------->ANAC46       <- =============================================MADS_MADS        <---------GLK1(2)--------->ZAT14    -- --HSFB2a(2)           --------->MYB46(3)     <---------At4g35610        *TSS --------->ANAC46  <----   aagcgactgatgtacggacatatcaacaactcccctataaagatactcagctaaacacaaaaacagaatctattctcaacacaacactaaagacaattgt  13744000          --------->MYB46(3)     --------->ANAC46     --------->ANAC58     --------->ANAC58   ----------->RAV1(1)   ------->GAMYB   --------->AtMYB61  <---------MYB55(2)  --------->MYB46(3) -------->P--------->AtMYB61 ------>MYB46(1) ------>MYB83 -------->MYB55(1)                                                                              ----- --------MYB111(2)                                                                              <---- --------MYB46(2)                                                                    <---------ANAC58 -------->ANAC46                                                                  =================== --------MYB59                                                <------ZmHOX2a(1)   =================== --------MYB111(1)       --------->DAG2          <---------MYB111(1)              <------ZmHOX2a(1) ------->MYB46(3)  ----------->GT1    ---------->DOF2   <---------ZAT6<---------ZAT6--------->ZAT2 -------GT1------->GAMYB---------->DOF2          --------->MYB46(3)   ----------->GT1<---------ANAC58   accaaccacacaaccacaagagagagaaaagtgagaatgggaaagagagcaactactagtgtgaggagagaagagttaaacagaggagcttggactgatc  13744100                      <---------bZIP60(1)                      --------->TGA2(1)            ------>ZmHOX2a(1)           --------->TOE1(3)         <------ZmHOX2a(2)        <---------ARR14(2)        <---------ARR11(3)        --------->ARR11(3)        --------->ARR14(2)        <---------ARR14(3)        <---------GLK1(2)        --------->ARR14(3)        --------->ANAC46      ----------->ARR10          <---------LBD16                      <---------------AtSPL8 <----------ID1       --------->bZIP60(1)                           --------->ZAT2              ----- ---->YAB1 --------->TOE2(3)     <---------At5g28300            --------->MYB46(3)             <----- -----ICU4------>ZmHOX2a(2)     --------->MYB52(1) --------->ZAT18  <---------ZAT2            ------- ================HOX2a_HOX2a   ----------->HVH21   --------->ZAT14 ------>MYB46(1)            <------ ===============HOX2a_HOX2a <---------ALFIN1       <---------ZAT18 ------>MYB83          <-----------GT1   atgaagacaagatccttagagattacatcaccactcacggcgaaggcaaatggagcactctccctaaccaagctggtactaatctctctatctaccgatc  13744200                      -------->ATHB1                      --------->YAB1                      <---------ICU4                      --------->ATHB51                     --------->ICU4                                                                 <                     <---------YAB1                                                                 -      --------->ARR11(3)    <---------ANAC58                                                ---------      <---------ARR11(3)    <---------ANAC58                                                ---------     <---------CCA1(2)<--------ATHB1                                                        <-------- <----------DOF2     <---------ATHB12        <---------ARR11(3)                             --------- ->ZmHOX2a(2)        <---------ATHB51        --------->ARR11(3)                       --------->ARR11(3) -ZmHOX2a(2)      ------------>ATHB5     ---------->DOF2       ---------->DOF2        <---------ARR11(3) -->ARR14(2)     <-------TEIL      --------->ANAC58     <---------REM1(1)     <---------ANAC46     <- ---ARR14(2) --------------->AtSPL8--------->ANAC58     --------->ALFIN1     <---------DEAR3(1)   <--   cgtctttatatcttctacgtacaataattgtcttggcacacataaaaggtctcaagaggtgtggcaaaagctgtagacttcggtggaagaactacctaag  13744300      ---------->DOF2 --------->LBD16 ---------LBD16                           --------->YAB1 -------->LBD16          --------->At4g35610                                                       <- >TOE1(2)                <---------At4g35610                                            ------->GAMYB >TOE2(2)  --------->ZAT18            <---------ARR11(3)                               --------->MYB46(3) -MYB59--------->DAG2    ----------->RAV1(2)  --------->GLK1(2)                       -------->P <--- >TOE2(3)  <---------ZAT18            --------->ARR11(3)                           <---------MYB52(2) --------LBD16--------->At5g28300  >>>>>>>>>TBF1                                 <-----------GT1 ---- -------LBD16----------->GT1--------->At4g35610            <---------ARR11(3)    --------->ZAT6<-----   accggggataaagcgcggtaacatctcatctgatgaagaagaactcataatccgtctccataatcttcttggaaacaggtttttcactaaccacatagaa  13744400                                         ---------->DOF2                                        --------->AHL20(2)                         --------->MYB46(3)                                        <---------AHL20(2)                         --------->DEAR3(2)                                       <---------YAB1                     --------->HSFB2a(2)                                     --------->YAB1                  <---------HSFC1(2)                                    --------->ICU4                   <---------HSFB2a(1)                                    <---------YAB1                   --------->HSFB2a(1)  <---------------AGL15            <---------AHL20(2)                --------->ATERF1(1)  <----------DOF2                  --------->AHL20(2)        --------->At4g35610 --------->MYB52(1)  --------------->AGL15            <---------AHL20(1)        <---------ZAT2     <------NtERF2 ----------GT1----------->GT1     --------->YAB1             --------->ZAT2    <XXXXXXXXXXXXXXXXXXXXMIR858 ------HSFB2a(1)          <---------ANAC55(2)                <---------At4g35610<---------SPL7 ----->HSFB2a(1)          --------->ANAC55(2)         <-------GAMYB  --------->HSFC1(2)    --------->AHL20(2) ----GLK1(2)---------->DOF2 ----------->HVH21        <---------MYB46(3)   <---------HSFB2a(2)   -----   ttttctttttgtagtaaagttatttgttatgtgacattataattaaagcagatggtcgttgatagctgggaggcttccaggccgaacagacaatgaaata  13744500  Previous    Next  AGI:  At5g35550.1    Description:  TT2 (TRANSPARENT TESTA 2); DNA binding / transcription factor. Identical to Transcription factor TRANSPARENT TESTA 2 (TT2) [Arabidopsis Thaliana] (GB:Q9FJA2); similar to ATMYB5 (MYB DOMAIN PROTEIN 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G13540.1); similar to transparent testa 2 family isoform 1 [Brassica napus] (GB:ABI13034.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro Range:  from: 13743973    to: 13745090    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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