Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->YAB1             <---------AHL20(2)      ----------->GT1                             --------->YAB1            <---------YAB1           <---------ANAC55(2)                      --------->YAB1         <---------YAB1          <-----------HVH21 <----------ID1       --------->GLK1(2)--------->ZAT6 -----WRI1--------->YAB1       ------->TEIL      <---------ICU4        --------->YAB1  --------->YAB1   agaaactacctataataaatggttagagaaatgaatgtcaagtgaaaacaaaaatgacaaatttagttaacaagaatcattcatcacaataacactagtc  13542600                                                         --------->ZAT14                                          <---------ANAC58                                          <---------ANAC58                                          --------->ANAC55(2)                                          <---------ANAC55(2)                                          <---------ANAC46  --------->ZAT6                                          <---------ANAC55(1)----------->GT1          --------->YAB1                 <-----------------------TaNAC69(2)         <---------YAB1                  <-------TEIL    <---------ZAT14              --------->TOE2(3)       --------->YAB1       --------->ANAC58   ---------->DOF2               --------->HSFB2a(1)     <-----------GT1        --------->ANAC58 --------->REM1(2)        --------->TOE1(2)            --   tctctattaacatcataagagaacatgatcaagaaaacattgatacgtgtaaagaacagtgaacagtagaaaccctcgaacatttcaatctcaaaaatca  13542700                                                                           --------->CCA1(2)                                                                           <------ZmHOX2a(2)                                                                          <---------ARR11(3)                                                                          --------->AGP1                                                                          <---------ARR14(2)                                             ---------->DOF2              --------->ARR14(2)     --------->YAB1                     <---------AHL20(2)               --------->GLK1(1)    <---------YAB1                  --------->YAB1                  --------->CCA1(2)  --------->YAB1                   <---------YAB1                  <----------ID1  <---------ICU4                 --------->YAB1              ----------->HVH21 --------->ICU4                 --------->ICU4             <---------At4g35610 ------->YAB1     ---------->DOF2<---------ICU4            --------->At4g35610                      -   acaataatcataaaacagagcaaaggaaacaacaattatcatataatcaaagaagaacatgagctgatagagacgagatccaaaaaaaaaacaatttcat  13542800                                                       ==================================HOX2a_HOX2a                                                       <------ZmHOX2a(1)             <-----------HVH21                                         ----------->GT1                           ------>ZmHOX2a(2)             --------->ICU4            --------->GLK1(2)                          <------ZmHOX2a(2)     --------->RAP2.6(2)<---------AHL20(2)             ===================================HOX2a_HOX2a --------->DAG2         --------->AHL20(2)            <----------ID1            <---------GLK1(1) --------->DOF2  --------->AHL20(2)>>>>>>>>>TBF1--------->ANAC46                --------->GLK1(1)   cgaaaagccgaaacaaagattaaaaatttatcaagaagaagaatcgttacacgaagaggacgagagcaaaccagggtttcagagatcggtgagcgaagaa  13542900                <-------GAMYB               <---------MYB46(3)               ----------->GT1              <---------TOE2(3)          <-------GAMYB         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       --------->ARR11(3)       <---------ARR11(3)                                          <----------DOF2   ---------->DOF2                                            <---------ALFIN1                   ----   ggctctaaagatcgttgtggttaatttgagaatttcattttttgagacagagccaattcagacaacactctttgtctagatagaaaatggggaaaccgag  13543000                                      --------->AHL20(2)                                      ----------->TBP                                  ----------->GT1                             <---------AHL20(2)                             --------->AHL20(2)                       --------->TOE2(3)                            <---------AHL20(2)                      --------->ICU4                            --------->AHL20(1)                   <---------AHL20(2)                            --------->AHL20(2)                   <---------ATHB51                        <---------AHL20(2)                 --------->ANAC58                     -----                        --------->AHL20(2)                 --------->ANAC58                   <------                       --------->AHL20(2)                  <---------ANAC55(2)                -------          ---------->DOF2   <---------AHL20(1)<---------AHL20(2) --------->AHL20(2)           ------- ------>DOF2     *TSS  <---------AHL20(2)    --------->AHL20(2)--------->YAB1<-----------GT1  <------   aaagagaagagagaaagaaactgaatttaatttattttgtataaatataaaatttgttgttacgaaaataattcttaatttacattcacttcaaaatata  13543100     ----------->TBP                                      --------->YAB1                            -   --------------->AGL15                               --------->WOX13(1)                           <   <---------------AGL15                               --------->YAB1                               <   ================================================================================================== ---->ARR11(3)                                        --------->AHL20(2)                 <------ZmHOX2a(1) ---AHL20(1)              <----------DOF2         <---------YAB1                         --------->YAB1 -->AHL20(1)           ---------->ID1       <---------ARR11(3)                          ----------->GT1 -->ARR11(3)    --------->GLK1(2)           <-----------ARR10                        ---------->DOF2= ---ARR11(3)<------ZmHOX2a(1)      <XXXXXXXXXXXXXXXXXXXXMIR844               ---------->DOF2        -   tcatgctataagtaggagaatatttgtgcttttgggcttataaacaaatcttaccattaatcaaaatttccttcagaaaaaaagaatcaaaggataattc  13543200                   <---------ANAC58                   <---------ANAC46                   <---------ANAC58                  <-------TEIL                <---------ARR14(2)                --------->ARR14(2)                <---------GLK1(2)           --------->CCA1(2)          <---------ARR14(2)          --------->ARR11(1)                                                                  -------          --------->ARR11(3)                                                                  ------- <---------------AGL15                                                                        <------ --------------->AGL15                                                                        ------- ---------------->AGL3                                                                        ------- -----------------AGL2                                                                       -------- -----------------AGL3                                                           --------->AHL20(1) ================MADS_MADS  <---------AtLEC2                                     --------->ARR11(3) ==================================================================================================== ---------------->AGL2  <---------ANAC46                                         <---------AHL20(1)   tttctaatattagatatggattcgtgttgtgcatgctaaatagatgaaatatgtctaacaaatatttgccattgtttaacaaatattttgagacttccat  13543300        --------->AHL20(2) ----------->GT1 <---------ANAC55(2)                                                                               <- -->YAB1<---------AHL20(2)                                                                       <--- -------->AGL15                                                                          --------->AHL20(1) ---------AGL15                                                                          <---------AHL20(1) -->TOE2(3)  <----------DOF2--------->AHL20(2)                                           <---------AHL20(2) -->HSFB2a(2)--------->TOE2(3)                                                           --------->AHL20(2) --------->AGL1 --------->YAB1                 <---------AHL20(2)            <---------MYB46(3)  <--- =========MADS_MADS--------->YAB1      <---------MYB46(3)         --------->AHL20(2)  --------->AHL20(2)   aatatgtaaattaaactttaataaaaacaaatatatgtcaattgttgattttttttttttgggtcaaaatatatgtcaattgttgatataaaatattagg  13543400                                  <---------MYB52(1)                       ------>MYB46(1)                                                      ---------                    --------->DEAR3(2)  <---------ANAC58                                    <--------                  ------>MYB83  <---------DEAR3(2)                                    ------->GAMYB        <---------HSFB2a(2)     <------MYB46(1)                                     -------->P        --------->HSFB2a(2)     <------MYB83                                       --------->MYB52(1)       <---------ANAC46--------->MYB52(1)         <---------MYB52(1)             <---------MYB52(2) <      <---------LBD16<---------MYB59    <---------ANAC58                       <-----------ARR10  <-- ----------------->AGL1------>MYB83     <---------ANAC46                     --------->LBD16<-------- --------ATERF1(1)------>MYB46(1)<-------GAMYB   <-------GAMYB              <---------HSFB2a(2)  <--- ------ANAC58     --------->MYB52(1)   <---------LBD16                      --------->ANAC46--------- ------ANAC58   <---------MYB59 ----------->GT1<---------ANAC46             --------->HSFB2a(2) <----   cctgcgacttcgggtaaaccgaaccgaaccgagtcggttatttcgggtttcggttattttggatttttgaaaattcttccgaaactaaccgaaatttatt  13543500  Previous    Next  AGI:  At5g35330.1    Description:  MBD02 (methyl-CpG-binding domain 2); DNA binding. similar to MBD12 (METHYL-CPG-BINDING DOMAIN 12) [Arabidopsis thaliana] (TAIR:AT5G35338.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45329.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124); contains InterPro domain Methyl-CpG DNA binding; (InterPro:IPR001739) Range:  from: 13540705    to: 13543017    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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