Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->ANAC46                                                       --------->DEAR3(1)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->ZAT6                                                        --------->ANAC46      -------->P                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)    ------>ZmHOX2a(1)                                                   <---------ZAT2  --------->At4g35610    <xxxxxxxxxxxxxxxxsmallRNA(i)                                        <---------At4g35610 ------>NtERF2                         --------->REM1(1)                <---------HSFB2a(1) -------->DEAR3(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->HSFB2a(1) -----NtERF2               --------->AtMYB61                            --------->HSFC1(2) ------->ATERF1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------HSFC1(2) -------ATERF1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  <---------ARR14(2) --->NtERF2     --------->ANAC58 --------->LBD16                       <-----------ARR10<---------ZAT2 -------RAP2.3(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  --------->ARR14(2)<---------GLK1(2) ------DEAR3(1) --------->ANAC58<---------ANAC58                      <------NtERF2<---------ARR14(2) ----->DEAR3(1) --------->ANAC46<---------ANAC58                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------HVH21    --------->RAP2.6(2)  <----------DOF2                 --------->LBD16    <---------At4g35610 ----ATERF1(1) <xxxxxxxxxxxxxxxxsmallRNA(i)                         --------->DEAR3(1)  --------->ZAT2 -->DEAR3(1)----------->HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------LBD16<---------SPL7 >HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   cgcctccttaccactcgaccgcaactcgacctctccgtgcttcatcttcatcttcatttactcgacttcgccggagcttctcgccgttccagcttcgcat  11853600                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            --------->HSFC1(2)                               <---------ZAT14              <---------HSFC1(2)                               --------->ZAT14            <------NtERF2                             --------->ANAC46            --------->LBD16                             --------->bZIP60(2)        --------->DEAR3(1)  <---------ANAC58                     --------->ANAC46              <xxxxxxxxxxxxxxxxsmallRNA(i)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --                   <-----------GT1   <----------DOF2   <---------LBD16      <---------ANAC58    <----           xxxxxxxxxxxxxxxx>smallRNA(i)            xxxxxxxxxxxxxxxx>smallRNA(i)                 <----          <xxxxxxxxxxxxxxxxsmallRNA(i)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        -----        xxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->ARR11(3)--------->ANAC58             <-----        <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <---------ARR11(3)--------->ANAC46             xxxxxx       --------->DEAR3(1)  --------->AtMYB61    <-----------ARR10 --------->ANAC58       <---------At4g35610       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->TOE2(3) --------->HSFB2a(1)          --------->At4g35610     <---------At5g28300   <---------ALFIN1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <-----------HVH21   actctctcaccgtctctcgtttcactcgaccacttcacactttgcctcaacatcttcgccggagtttctcgccattgtccgtgcttctgtcatctccgtt  11853700                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->DEAR3(1)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->RAP2.3(3)            --------->DEAR3(2)                                       --------->RAP2.3(2)         <---------SPL7                                             --------->ATERF1(1)         ----------->HVH21                                          --------->RAP2.3(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->DEAR3(1)                    --------->ANAC46     <---------ATERF1(1)        --------->MYB46(3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------LBD16                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ---------->ID1      --------->MYB52(1)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------CCA1(2)     <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------RAP2.3(1)     --------->AtMYB61               --------->ANAC46              ------>NtERF2    --------->MYB46(3)    xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i) ------->ANAC46    --------->REM1(1) <-----------GT1     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -----ZAT18<---------ARR14(2)       --------->MYB46(3)--------->ANAC58    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----ZAT14--------->ARR14(2)   <---------MYB52(2)    --------->ANAC58   xxxxxxxxxxxxxxxx>smallRNA(i) ---->ZAT14--------->SPL7<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------ZAT18             <------- ----MYB52(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC46------>NtERF2--------->ZAT14 xxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------At5g28300 <----------DOF2 ---   cactcgaccaccggaccggcttcaccatctctcaactatccaccattcactcgacctcgccattcactgcgcctccattcgtctctttactcgactgctc  11853800                                                  <---------O2                                                  --------->O2                                                  <---------ANAC58                                                  <---------ANAC58                                                  <---------ANAC55(2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                          <---------ALFIN1             --------->WRKY38(1)                                         --------->ZAT18               --------->WRKY12                                         <---------ZAT14        --------->ZAT14                                         --------->ZAT14        <---------ZAT14                                        <---------ALFIN1     <---------ANAC58                     <--          --------->DEAR3(1)            --------->AtMYB61    <---------ANAC46                    <---          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------MYB52(1) --------->ZAT14               <----        ------>NtERF2                ----------------------->TaNAC69(2)----------->HVH21  --------->RAP2.6(2)       <---------ALFIN1        --------->ZAT14<-----------HVH21 --------->REM1(2)         -----------      <---------MYB55(2)       --------->ARR14(2) --------->ANAC55(2)  --------->ETT(2)--------->ANAC58      --------->MYB46(3)      --------->DOF5.7(2) <---------ANAC55(1)  <---------ETT(2)--------->ANAC58 --At4g35610                  <---------MYB52(1)  <---------ANAC46<---------ZAT14      --------->ANAC46 --->ZmHOX2a(1)         xxxxxxxxxxxxxxxx>smallRNA(i)         <---------ANAC58       --------->ANAC46-   ctcaaacccccaccgtcttctctaaattcgccgtttactcgaccacactgttacgtctctcattcgtgtacagtcgaccgctatacccgaagccacaata  11853900                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       ----------->HVH21  --------->TOE1(1)                                    <------MYB83  <---------ZAT18         --------->TOE2(1)   <---------ANAC58       <------------CBF  --------->ZAT14   ----------->HVH21         --------->ALFIN1     --------->ARR11(3)           -----  <---------ZAT14  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->YAB1                <---- ---------GT1     --------->ANAC46            <---------ANAC58  --------->MYB52(1)        <-------TEIL ------YAB1     <-----------GT1  <---------WRKY18(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -----ARR11(3)<-----------HVH21 ----------->HVH21              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) >RAV1(1)xxxxxxxxxxxxxxxx>smallRNA(s)     <---------ANAC46    <---------MYB52(2)         <-----------GT1 -------------->AtSPL8xxxxxxxxxxxxxxxx>smallRNA(i)    <---------AHL20(2)       <------MYB46(1)  <----   tcactgtactcgaccgtttcactcgaccgcgtacttgactggtttagtgtgtgtgtttatttgaactaacatattgatatttggttttgagttacattct  11854000                                     ------>ZmHOX2a(1)                                  --------->HSFB2a(1)                                 <---------ARR11(1)                                 --------->GLK1(2)                              <---------WRKY38(1)                                 --------->ARR14(2)                            <<<<<<<<<<WRKY38                                 <---------ARR14(2)                            <<<<<<<<<<WRKY11                                <---------ARR14(1)                             <<<<<<<<<<WRKY43                              <---------ANAC58                           <xxxxxxxxxxxxxxxxsmallRNA(i)                              <---------ANAC58                          ------->TEIL                              <---------ANAC46                         <xxxxxxxxxxxxxxxxsmallRNA(i)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxx>smallRNA(si3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->At4g35610              <---------YAB1xxxxxxxxxxxxxxxx>smallRNA(i)           <---------At4g35610             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxx        ------------>CBF   --------->ALFIN1         xxxxxxxxxxxxxxxx>smallRNA(i)<---------WRKY45      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ANAC46   ------->TEIL <<<<<<<<<<WRKY26   --------->LBD16        <xxxxxxxxxxxxxxxxsmallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxx  <---------LBD16      --------->ZAT14        <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------LBD16       <---------ZAT14   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <<<<<<<<<<WRKY6 <xxxxx ---------->AGL15  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxx ------DOF2  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->LBD16 ---------->DOF2--------->WRKY18(1) -----------AGL15*TSS <<<<<<<<<<<<<<<<<LFY  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------WRKY12   ttttcagggaatcaatatgagtaactacagtggcgaatcctccatggatgcggattacaacgtcgatgaagctgaatcttggtcaactagaccagagaga  11854100                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                  ------>MYB46(1)                                  ------>MYB83                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <---------MYB55(2)                                <xxxxxxxxxxxxxxxxsmallRNA(i)                               xxxxxxxxxxxxxxxx>smallRNA(i)                               --------->ANAC58                        xxxxxxxxxxxxxxxx>smallRNA(i)                --------->At4g35610  ------->GAMYB             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------YAB1xxxxxxxxxxxxxxxx>smallRNA(i)             <---------At4g35610        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------ZAT2       <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <xxxxxxxxxxxxxxxxsmallRNA(i) --------->MYB52(1)              --------->At4g35610               <    ------->GAMYBxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ZAT2                    -   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <---------ATHB12                       xxxxxx ----------->RAV1(1) xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(i)   <------ZmHOX2a(1)-- xxxxxxxxxxxxsmallRNA(le3)     --------->ANAC58    --------->ANAC58         <---------ANAC58  ------- xxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxsmallRNA(i) ---------->DOF2   <---------ANAC58  ------- xxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB46(3) --------->ANAC46      <---------WOX13(1)   ------- xxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)    --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   gagcaacaggcttatgagagcttcagagccgagacccaacgctcagtagctcgacgcaatgaaaggagagctgagattgctagaggaaagatagcgatga  11854200                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                 xxxxxxxxxxxxxxxx>smallRNA(i)                               <---------ANAC46                               <---------bZIP60(2)                               --------->O2                               <---------O2                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->CCA1(2)  <---------ARR14(2)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ARR14(2)  <---------ARR11(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ARR14(2)  --------->ARR14(3)       <-----------HVH21 ---------At4g35610     <---------ARR14(3)       <xxxxxxxxxxxxxxxxsmallRNA(i) -------->At4g35610     --------->ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->RAV1(1)      --------->ARR14(2)  ----------->RAV1(2)                                    -- -->WRKY12            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(i)            xxx ---->HVH21           ----------->ARR10    ------->TEIL   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<----- -->WRKY38(1)   ------>ZmHOX2a(2)xxxxxxxxxxxxxxxx>smallRNA(s)                        <xxxxxxxxxxxxxxx   ccagcagatatgagttgatcgacgaagatattgacgtcgagtatgagcctgagtcatggcacagagaaacaaaactgttgaataagcctgatgaagttac  11854300                                                                                                   <x                                                                                                   <-                                                                                                -----                                                                                                -----                                                                                                <----                                                <---------SPL7                                <xxxxxx                              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              <------                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          <--------                          xxxxxxxxxxxxxxxx>smallRNA(i)                                      <--------                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                ---------                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <xxxxxxxx                        <---------ZAT2<---------LBD16                                   <xxxxxxxxxxxx                        <---------At4g35610 <---------TOE1(1)                           <xxxxxxxxxxxx        <-------TEIL    --------->ZAT2--------->LBD16                                <xxxxxxxxxxxxxxx    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxx    <------ZmHOX2a(1)   --------->At4g35610 <---------TOE2(1)                      xxxxxxxxxxxxxxxxxx ------->ALFIN1  <----------DOF2     <---------HSFB2a(2)                   --------->ZAT2  <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->HSFB2a(2)         --------->GLK1(2) <xxxxxxxxxxxxxxxxx ----At5g28300   <---------DAG2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------ZAT2 <xxxxxxxxxx xsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------YAB1xxxxxxxxxxxxxxxx>smallRNA(i)   agtggaggagtacatcagacttttcgagctgaacgacttctggggaacgaggtacccctgttatgagactctagcccagcttgggctactggaggacgta  11854400             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->HSFB2a(2)         <---------HSFB2a(2)         <---------HSFC1(1)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ICU4    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(i) --------ZAT18      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---->SPL7<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->DOF2<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-------TEIL ---TEIL<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->SPL7 xxxxxxxxxxxxxxsmallRNA(fl3)              --------------->AtSPL3 ---SPL7xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->LBD16 -------AtSPL3 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -------AtSPL8xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>AtSPL3xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxsmallRNA(fl3)             -------->P xxxxxxxxxxxsmallRNA(fl3)            <---------ANAC58                                           xxxxx xxxxxxxxxsmallRNA(fl3)              <---------ANAC58                                       xxxxxxxxx xxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------ALFIN1xx xxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(i)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          ----------->GT1     --------->ZAT14  xx xxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------- xxxxxxxxxxxxxsmallRNA(i2)        xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xx   cagcacttattcgagaagtgccatcttgagacgctgatgtcttacccgtacatcgcttacaagaaggaaacaatagagtttctctccactctgcaagtgg  11854500  Previous    Next  AGI:  At5g32197.1    Description:  transposable element gene. athila retroelement ORF1 protein, contains Pfam PF03078: ATHILA ORF-1 family Range:  from: 11854017    to: 11855963    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version