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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                       ------>ZmHOX2a(2)
                                                                                      <------ZmHOX2a(2)
                                                                                     --------->ARR11(3)
                                                                                     <---------ARR14(2)
                                             <---------ICU4                          <---------ARR11(3)
                                             --------->YAB1                          --------->ARR14(2)
                                            <---------ATHB12                        <---------GLK1(1)
              <---------MYB52(1)      <-------GAMYB      --------->ALFIN1           --------->GLK1(1)
             --------->LBD16         <---------MYB46(3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      >>
             <-----------HVH21      --------->ALFIN1    <------NtERF2               <---------At4g35610
            <---------ANAC58       ------->MYC3       <---------DREB2C(2)   <---------MYB46(3)    >>
--------RAV1(1) <---------AtMYB61  <-------MYC3<---------YAB1   <---------ZAT14     --------->At4g35610
->HVH21     <---------ANAC58      <---------ANAC46    <---------DEAR3(1)   --------->SPL7 <---------
 
tgttggattgtgcatccgtgaggtcgaagctaagaccgcgtggttgaatcattcttggcggtgttacttcagagttcggacgttgggagatcccttttgc  11429400
               <---------MYB52(1)
           <------NtERF2
          ------>NtERF2  ----------->HVH21
          --------->MYB52(1)
         ----------->HVH21
         --------->DEAR3(1)
         --------->RAP2.3(3)                                              <---------ARR11(3) <------
        --------->DEAR3(2)                                          <----------DOF2         --------
  <-----------HVH21---------->ID1                                  <---------ANAC46         <-------
>>>>>>>AtLHY <---------DEAR3(2)                 <-----------HVH21  <---------ANAC58      --------->DAG2
>>>>>>>AtCCA1<---------MYB46(3)               <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR11(3)<-------
-DOF2  <---------At4g35610   ---------->DOF2 ------>ZmHOX2a(1)     <---------ANAC58    ---------->DOF2
 
taactcgtcgagccgacggtttgtctctgtgacaaagttggacaggtccttggtcacagttgtgagaatggctttgaggtcttccaaggagaaaggtggt  11429500
                                  --------->WRKY38(1)
                                  --------->WRKY12
                    --------->ARR14(1)
         ------->PIF5             --------->ZAT18
      <-----------RAV1(2)    --------->LBD16            <---------LBD16
 --------->ATHB12  --------->ARR14(2)                   <---------At5g28300
 --------->YAB1    <---------ARR14(2)                 <---------REM1(2)
 <---------ICU4    <---------GLK1(2)         <---------WRKY12
--------->ICU4    ===============================HOX2a_HOX2a             --------->ZAT2            <
---MYB46(3)       <------ZmHOX2a(1)  <---------WOX13(1)<-----------GT1   <---------At4g35610     <--
->ALFIN1<------NtERF2     ------>NtERF2   ------>ZmHOX2a(2)              --------->At4g35610     ---
--AtMYB61<-------PIF5    --------->DEAR3(1)<-----------HVH21    --------->ZAT6                  ----
--DEAR3(1)       ----------->ARR10<---------ZAT14  <---------MYB52(1)    <---------ZAT2   --------->At4g35610
 
ggaatgatggcaggggcgataggattcgcctcccgagttgactgatcgtcaaccgttttcacggctaactctagagagctggaattagatgggagcaaaa  11429600
            <-------TEIL                                                --------->ARR14(2)
        <---------TOE1(3)                                               <---------ARR14(2)
        <---------TOE2(3) ----------->HVH21                             --------->TOE1(2)
   ------->TEIL          <-------MYC3                                --------->AHL20(2)
---------TOE2(3)         ------->MYC3                              ----------->GT1
-------AHL20(2)   ---------->DOF2                                ---------->DOF2----------->GT1
------>AHL20(2)  --------->AHL20(2)                            --------->ARR11(3)                ---
----->AHL20(2)--------->WOX13(1)           ---------->DOF2 ---------->DOF2  <---------HSFB2a(2)  <--
 
ttaatgaacctaaggttcaattaaagcatgtgatgcctattggctcaaaagataactatcccaaaagataaagaaaatacgagaagtaaatgaaaacttt  11429700
                                                                                                 <--
                                                                                         <----------
                 <---------O2                                 --------->ATHB12         <---------ARR11(3)
                 --------->O2                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------
                ------>ZmHOX2a(1)                   --------->MYB46(3)                 --------->ARR11(3)
--------->HSFB2a(2)                               <-----------GT1            ----------->GT1--------
<---------HSFB2a(2)   <---------YAB1              --------->YAB1 *TSS --------->YAB1  --------->YAB1
------------>AGL15 ----------->HVH21      --------->GLK1(1)  --------->ICU4 <---------TOE2(3) <-----
-------------AGL15 ----------->TGA1       <---------GLK1(1)  <---------ATHB12<---------ANAC46<------
 
cttcaagaagaaccaagtcctcgtgacgatagagaaaactatgagatttccattaacaatccccatgatggaatcatatgaggtagaaatgatattgatg  11429800
                                                           <------ZmHOX2a(2)
                                                          --------->ARR14(2)
                                                          <---------ARR14(2)
                                                      ------>ZmHOX2a(2)
    --------->AHL20(2)                              --------->ARR11(3)                        <-----
-------YAB1                                         <---------ARR11(3)                 --------->DAG2
--CBF                                             <---------YAB1                     ---------->DOF2
--->ICU4                                        --------->YAB1                   <---------HSFB2a(2)
->YAB1               <----------DOF2   --------->CCA1(2)  <---------ARR11(3)     <---------------AGL15
----YAB1 <---------GLK1(2)            --------->ARR11(1)  --------->AGP1         --------->HSFB2a(2)
---TOE2(3)   <---------YAB1 ---------->DOF2    --------->ICU4 ---------->DOF2   ----------------->AGL1
 
atgaaaatgaaatattctcattttctttatctaaagagatagatatgagaatgatgatctagatccaaagacattacccgagtgccagaaaaggcgaaat  11429900
                                                                                                   <
                                                                                                   <
                                                                                                 ---
                                                                                               <----
                                                          <-----------HVH21                    <----
                  --------->AtLEC2           ---------->DOF2                                   -----
                <---------ANAC58            --------->AHL20(2)                                 -----
                <---------ANAC58      --------->TOE2(3) *TSS<-----------GT1               <---------ZAT18
      ----------->GT1       <------------CBF<---------AHL20(2)                      <-----------RAV1(1)
-------CBF      <---------ANAC46 <---------GLK1(1)     <------------CBF    ----------->GT1--------->ZAT18
 
tgggagaaatagaaaaatgccttgcaagttgaattgaactcccttaataaaagaaacctattgtcacttcatttgagaatgtaaaacatgttgggcacaa  11430000
------MYB46(1)
------MYB83
------>ALFIN1                     <------ZmHOX2a(2)
-----O2                    --------->ZAT2
-----TGA1a                 --------->At4g35610          <-----------RAV1(1)            --------->At4g35610
---->O2                    <---------ZAT2<---------ARR11(3)                 ---------->DOF2
---->TGA1a                 <---------At4g35610      <---------ALFIN1   <-----------------AGL1
 
gtgggtatttgtgcgaaacaaaattaagagagctgagatcaaacgatattaagcccgacttgttgcccaaggtttctctcaaaggccatgagttgaatat  11430100
                                                                             <-----------GT1
                                                                         --------->CCA1(2)
                                                                 <---------ICU4
                                                                 <---------AHL20(2)
                                                                 <--------ATHB1
               --------->WRKY18(1)                               --------->AHL20(2)          <------
              <-----------HVH21                      --------->RAP2.6(3)--------->ARR11(3)   -------
             --------->LBD16                       <----------DOF2     <<<<<<<<<RAP2.2     ---------
           <---------LBD16                        <---------DAG2<---------ATHB51        <---------REM1(1)
         <-----------GT1                          <----------DOF2--------->ATHB51      ------->TEIL
      <---------GLK1(2)                 <---------ANAC55(2)     <---------ATHB12    <---------TOE2(3)
      <---------ARR14(2)                --------->ANAC55(2)<---------At4g35610  <---------DAG2
      --------->ARR14(2)    --------->AHL20(2)  ------->TEIL    --------->ICU4  <----------DOF2
 
gaagaaacatattctccggtcatggatgcaattacattcaagtacttaatgagcctttcggcatctaataatttagatatatactttatggatgtagtga  11430200
                                         <---------AHL20(2)
                      <---------ICU4     --------->AHL20(2)        ---------->DOF2
                      --------->YAB1 --------->AHL20(2)       <------ZmHOX2a(1)
              ------>ZmHOX2a(2)      <---------AHL20(2)       ----------->GT1
             <---------GLK1(1)     --------->AHL20(2)        ----------->GT1
             --------->GLK1(1)     <---------AHL20(2)   ------>ZmHOX2a(1)
            ------->TEIL         <---------AHL20(2) --------->ARR11(3)
     --------->AHL20(2)  --------->YAB1--------->AHL20(2)    --------->ICU4
     <---------AHL20(2) <---------YAB1 <---------AHL20(2) ---------->DOF2
---ZAT6     --------->ARR11(3)   --------->AHL20(2) --------->GLK1(2)
---->HVH21  <---------ARR11(3) --------->AHL20(2)   <---------ARR14(2)
-->GT1      <---------AGP1     <---------AHL20(2)   --------->ARR14(2)                       -------
 
caacttatttatatggatctcttgataatgatatatatatatatatatataagaaaatcctgaaaggattaaaagttatagaggcattaaacacatcaaa  11430300
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AGI:  At5g30942.1   
Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.3e-162 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Range:  from: 11424198    to: 11429766    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g31032.1   
Description:  transposable element gene. copia-like retrotransposon family, has a 1.4e-35 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)
Range:  from: 11429957    to: 11432905    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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