Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              -------                                                                                             <------NtERF2                                                                                            <--------                                                                                            <--------                                                                                           --------->ALFIN1                                                                                           <---------DEAR3(1)                                                                                          --------->ATERF1(1)                                  <---------ANAC58                                        <------NtERF2                                  <---------ANAC58                                      --------->ALFIN1                                  <------NtERF2                                         <------NtERF2                                  --------->TGA1a                                      ------>NtERF2                                  <---------TGA1a                                      <---------LBD16                                  <---------ANAC46                                    --------->DEAR3(1)                                  ========================MYC_MYB                     <---------ANAC46                                 ------>NtERF2                                       --------->ATERF1(1)                                <---------ANAC46                                     --------->RAP2.3(1)                               --------->ATERF1(1)                                   <------NtERF2                               <------NtERF2                                        <---------ORA47(2)                              <---------RRTF1(1)                                    <---------ATERF1(1)                              <---------ERF1                                        ------>NtERF2                              <---------RAP2.3(1)                                   <---------RAP2.6(1)                              ------>NtERF2                                         <---------RRTF1(1)                             <---------DEAR3(1)                    <------NtERF2    <---------RAP2.3(1)                             --------->ATERF1(2)                  ------>NtERF2     <---------ERF1                             <---------ATERF1(2)                 <---------ALFIN1   <---------DEAR4(2)                             <---------RAP2.3(2)                --------->ATERF1(1)<---------DEAR3(1)                             <---------RRTF1(3)                <---------PCF2      <---------RAP2.6(2)                             --------->bZIP60(1)               --------->PCF5      <---------ATERF1(2)                          ----------->TGA1                    <---------TCP15(2)   <---------RAP2.3(2)                        ----------->RAV1(2)                   ----------->TCP11(1) <---------DREB2C(2)                      <-----------GT1                        <-----------TCP11(1)  <---------RRTF1(3)                    <---------KAN4(2)   ----------------->AGL1<---------PCF5       <---------RRTF1(2)                  <------ZmHOX2a(1)<-----------HVH21      <---------ZAT2           <---------RAP2.3(3)             --------->ANAC46<---------O2                 --------->ZAT2          --------->ATERF1(1)        <---------bZIP60(1)  <---------RAP2.3(3)          <---------At4g35610    <---------ATERF1(1)        --------->bZIP60(1) --------->SPL7              <-----------RAV1(2)     <---------DEAR3(1) <- ------>DOF2<---------LBD16 --------->RAP2.6(3)     <---------At4g35610      --------->TOE1(1)<------ --ANAC46  --------->MYB52(1)<---------bZIP60(2)    --------->At4g35610      --------->TOE2(1)<------ --ANAC58 <---------REM1(2)--------->MYB52(1)      --------->MYB52(2) <---------MYB52(1)<----------CDC5 --ANAC58 <---------ZAT14 ----------->HVH21      <--------P --------->ALFIN1------>ZmHOX2a(1)--------   aaagtctctgacttcacggaggaataacctgacggcgcgtgagccaaatgggttagcttcaggtgggccaccgttctcctcgtaggcggcgcggaggcgg  10454800 ---->ATERF1(1) ->NtERF2 --NtERF2 >NtERF2 ----ATERF1(1)                      <----------ID1 ----RAP2.3(1)                  <------NtERF2 ---ATERF1(2)                  --------->LBD16 ---DEAR3(1)                  --------->ETT(1)                                                    <-- -->ATERF1(2)                 <---------ANAC46      <-----------RAV1(2)                       <------ -ATERF1(1)                  <---------LBD16       --------->At4g35610                     <---------MYB46(3) -RAP2.3(1)              <---------ANAC58  <------ZmHOX2a(1)                              --------->ALFIN1 --------RAP2.6(3)       <---------ANAC58 <----------ID1                                  <---------AtMYB61 ---RAP2.6(2)           <---------ZAT2   --------->ANAC58              ---------->DOF2 <-----------RAV1(1) ---RAP2.3(2)           --------->ZAT2   --------->ANAC58  <-------GAMYB            <---------ARR14(2) ->ATERF1(1)         <---------ALFIN1<------ZmHOX2a(1) <------ZmHOX2a(1)            --------->ARR14(2)   ccgataagagcgtcgagtgagccccaagcttgccggagaggacaaggacaaggagcaggagggttagggaggccaaagaaggcacagttctggtggtgaa  10454900                                                    ------>NtERF2                                                    --------->At4g35610                                                   --------->RAP2.3(3)                                                   --------->RRTF1(3)                                                   --------->RAP2.3(2)                                                   --------->DEAR3(1)                                                  --------->ORA47(2)                                                  <------NtERF2                                                 <---------ATERF1(1)                                                 <---------RAP2.3(1)                                                --------->ANAC46                                               --------->ZAT18                                               <---------ZAT14                                           <-------PIF5                                           <-------PIF4                                           ------->PIF4                                           <-------MYC3                                           <-------MYC4                                   --------->LBD16                                           ------->MYC4                                  --------->HSFB2a(2)                          <---------ANAC46 <-------MYC2                                  <---------HSFB2a(2)                         --------->At4g35610  --------->ALFIN1                           <---------ANAC46                    <---------TOE2(3)      ------->MYC2                                 <---------LBD16                  <---------WRKY38(1)      ------->MYC3                               --------->ARR14(2)                  <---------WRKY12         ------->PIF5                               <---------ARR14(2)                 --------->WRKY18(1)      --------->TGA1a                           <---------MYB46(3)           <---------ARR14(2)             --------->O2  --------->REM1(1)           --------->MYB55(2)           --------->ARR14(2)             --------->ANAC55(2)                       --------->ABI4(2)        --------->HSFB2a(2)               <---------ANAC55(2)                      --------->ALFIN1        ----------------->AGL1            <---------TGA1a --------->ANAC46      <---------DEAR3(1)        <---------HSFB2a(2)              ------------>OsbHLH66                 <---------ORA47(1)       <-----------------AGL1   <---------ARR14(2)--------->RAP2.3(1)         <------ZmHOX2a(1)       ----------------->AGL1  <------ZmHOX2a(1)<---------DEAR3(1)           <---------SPL7       <---------LBD16   <---------At4g35610--------->ALFIN1                 ----------->HVH21 --------DOF2   <-----------HVH21       <------------OsbHLH66           <---------At4g35610 ---ZAT18--------->LBD16--------->MYB52(1)<---------O2 <---------REM1(2)--------->At4g35610   cttttgttttcccgaactggtcaaggtagcggaggaactcgagcacgtgtgcgccgctacacgaggggagagagagcggaggacggtggttccggaggta  10455000                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              -------                                                 <------ZmHOX2a(1)                            <------                                               <---------TOE2(3)                              <------                                           <---------ANAC58                                  <-------                                           <---------ANAC58                                  <-------                                       --------->RAP2.6(3)                                  <-------GAMYB                  <---------LBD16   <---------SPL7 <---------AtMYB61                       <------MYB83                  <---------At5g28300  --------->DEAR3(2)                                  <------MYB46(1)                ----------->HVH21  --------->TOE1(1)          <-------GAMYB                <---------MYB46(3)               <-----------HVH21   --------->TOE2(1)<------MYB46(1)                 <---------ANAC58              --------->ANAC46    --------->HSFB2a(2)        --------->MYB52(2)<---------TOE2(3)        --------->ALFIN1          <---------HSFB2a(2) --------->ALFIN1   <------ZmHOX2a(1)<---------AtMYB61     --------->DAG2    <----------DOF2--------->SPL7<------MYB83  <---------ANAC46  <---------ANAC58    ---------->DOF2   <---------ANAC46--------->MYB52(1) <---------ZAT6<---------TOE2(3)  --------->MYB59   ttgacagaaagtgttccagtcacggcgtttttggttctcgtaccggcttgaggaaggtggtgttagttgtgttgaggaattagggttcttgtttggttgg  10455100    <------ZmHOX2a(2) ----MYB46(3) -MYB46(1) -MYB83 -->MYB111(1)                                                    <---------At4g35610 ---MYB46(3)                                           --------->ANAC58 -->MYB55(2)                                           --------->ANAC58 -->MYB46(2)          <---------ANAC58               ---------->DOF2                    <---------ARR14(2) -->MYB111(2)    <---------DAG2                   --------->LBD16--------->At4g35610   <------ZmHOX2a(1) ---AtMYB61      <----------DOF2                 <---------DEAR3(1)          <------NtERF2 ---DEAR3(1)    <---------ANAC58                <---------------------WRI1  --------->LBD16 -P<---------ARR11(3) <---------ANAC58    --------->DAG2   ---------->DOF2<---------LBD16 --------->MYB52(2) --MYB55(1)     <---------ANAC58         ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       *TSS   tgagagatcaaatccatggctttttcttgttcttgattttggaaaaagcagccggtgaagccaaagcagatgtctagccggagagaagaggatagttgaa  10455200                                                                                                    -                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                        <---------At4g35610                                                                                   ------>ZmHOX2a(2)<                                                                                  <------ZmHOX2a(2) -                                                                                 --------->ARR11(3) <                                         <---------AHL20(2)                      <---------ARR14(2) -                                        --------->AHL20(2)                       --------->ARR14(3) -                                        <---------AHL20(2)                       <---------ARR14(3) <                 <---------TOE1(3)  --------->AHL20(2)                           --------->ARR14(2)<-           --------->ATHB12         <---------AHL20(2)                           <---------ARR11(3)--        --------->YAB1            --------->TOE2(3)             <---------TOE2(3)<---------AGP1------      ------->TEIL          <-----------GT1         ---------->DOF2             <---------CCA1(2)  <- <------------CBF<---------TOE2(3)<----------DOF2 <------ZmHOX2a(2)   <----------DOF2   --------->At4g35610   gaagattgaatcttgatttagggttttgtttttcttctttaattttatatggatcaaagagagattagggttctttttttgtagatcttgagctaagatc  10455300       <---------At4g35610 -------->YAB1 -ZmHOX2a(2) -->ARR11(3) ---ARR11(3) ---------ICU4 -------->ATHB51 ------------ATHB5                                     <---------YAB1     ---------->DOF2 -------->ATHB12                                <-------GAMYB           <---------YAB1 ------->ATHB1                                 <---------MYB46(3)     <---------------AGL15 --------ATHB1             ---------->DOF2  <---------ZAT2            --------------->AGL15 --------ATHB51     --------->DAG2          --------->At4g35610      <-----------------AGL3         < ------->ICU4----------->GT1                --------->ZAT2           ----------------->AGL3       <-- ------>CBF ------------------------>ANAC81 <---------At4g35610<---------WOX13(1)     <-------TEIL--- --------ATHB12    ---------->DOF2    <-----------ARR10--------->ICU4<-----------------AGL2<---------   aataattgcagcaaatggagaaaaagtgagaaagagagagaaacttagctggttgtgatgatgagattgatactataaaaggtatagattcatctttttc  10455400                                                                                      <---------HSFB2a(2)                                                                                   <---------YAB1                           --------->ARR14(2)                               <---------HSFB2a(2)          --------->MYB46(3)                                             <---------YAB1 ------ZmHOX2a(2)          <---------ARR14(2)                           <---------ANAC46 -------At4g35610      --------->At4g35610                              <---------ANAC58          --- ------>At4g35610      <---------At4g35610          <---------ZAT14     <---------ANAC58         ---- -DOF2    <------------MYB.PH3(2)      ---------->DOF2     ----------->GT1  --------->HSFB2a(2)  <---   agatcaaatctaacaaacacttgtgagcagaaatggtgaggcaaagagagagagagaagtgaagtttatttgatgcttatagaagattatagaaggggag  10455500                             <---------AHL20(2)                             <---------YAB1                          <----------DOF2                       <-----------GT1                       ---------->ID1                      <-----------GT1                    <------------------------ANAC81                 <----------DOF2              <---------ARR11(3)              --------->ARR11(3)                             <---------YAB1              --------->AGP1<------------------------ANAC81--------->At4g35610             <---------GLK1(1)                      <----------DOF2             --------->GLK1(1)                   --------------->AGL15 ------>CCA1(2) ------>ZmHOX2a(2)                <---------------AGL15 ----->ARR11(3)<---------RVE1(1)                <-----------------AGL2                      <-------- ------ARR11(3)<------ZmHOX2a(2)            <----------DOF2<---------At4g35610 --------->ANAC46   atatataagtggaagagatctttttttcctttttattgttttctagcttttctactttgggagatgatagagagacaatacacaaaaacacacttgtcaa  10455600                                               <------ZmHOX2a(1)                            <------ZmHOX2a(1) --------->ZAT18              ----------->GT1                --------->At4g35610           <----------ID1           ---------->DOF2 ---HVH21 <---------ZAT14 ------------------------>ANAC81     --------->ANAC46                    ---   gactcaagagtgtatagtagctccaagagaggagagagagaagagaagaggactaagtgtttacacatcgtagaaaagagtaacttcatagatgaagaga  10455700  Previous    Next  AGI:  At5g28490.1    Description:  LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65072.1); contains InterPro domain Protein of unknown function DUF640 (InterPro:IPR006936) Range:  from: 10454397    to: 10455200    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g28491.1    Description:  unknown protein Range:  from: 10455686    to: 10455811    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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