Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->AHL20(2)       <---------AHL20(2)       <---------ZAT2      <-----------TBP           <---------At4g35610  ------------>CBF              --------->ZAT2           <---------AHL20(2) ---------At4g35610          --------->WRKY38(1)       <---------YAB1 -------->At4g35610   <---------ANAC58               --------->ATHB51 -------DEAR3(1)      <---------ANAC58               <---------AHL20(2) ----ZAT2       ----------->HVH21                --------->ICU4<----------DOF2                   <--- ----At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->AHL20(2)  ------->TEIL   --------->ZAT18 --->ZAT2 <---------YAB1   <-------GAMYB --------->MYB52(1)<-----------GT1           <------MYB83<--- >WRKY38(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->YAB1  <---------YAB1     <------MYB46(1)   tcggctcaatttataagtgtgactgcgagcgttgagctcggattaactgcaagaattatttttatcttttgaatgtagctcgatgctaggtgaactaagc  10374500                                      --------->YAB1                                     <<<<<<<<<ARR2                                               ----                                     <---------ATHB12                --------->ATHB12            <---                                   --------->WOX13(1)             --------->YAB1                 ----                                  --------->MYB46(3)        <---------ANAC55(2)                  <---                          <---------WRKY18(1)               --------->ANAC55(2)              <-------        <------NtERF2  <---------ANAC58               --------->ANAC58                <---------ANAC58 ------DAG2            <---------ANAC58               --------->ANAC58                <---------ANAC58 -------DOF2         --------->ARR11(3)         ---------->DOF2   <---------ICU4      <---------ANAC46   tttttgagtcgggactcaatttagagcttgacttcaacaatcaaaaaatgtaaagcacgaatacttaatcttgatgggagaagaaatggcgagaggctga  10374600                                                                            --------->AHL20(2)                                                                            --------->YAB1                                                                            <---------AHL20(2)   <---------GLK1(2)                                                       <---------YAB1   <---------ICU4                                                       <---------YAB1 ----->At4g35610                                                      <------ZmHOX2a(1) ------At4g35610            <------ZmHOX2a(1)                         --------->YAB1 ----->ZAT2           --------->DAG2                                <---------TOE2(3) ------ZAT2          ---------->DOF2                              ---------->DOF2               <---- ---CDC5          ----------->GT1         ---------->DOF2     <---------TOE2(3)           ---------->DOF2   gctcagaattgctgttccaaaggtaaagtaggagaagtgatcaacaaagccctcttggagttttaatgtaaaggataattatatgagaaaaataaagatt  10374700                                                                                 >>>>>>>>>>>>>>>>>LFY                                                                                <-----------------AGL1                  --------->AHL20(1)                                  --------->AHL20(2)                  <---------AHL20(1)                                  <---------AHL20(2)                  <---------AHL20(2)                                  <---------AHL20(1)                 --------->YAB1   ----------->GT1                     --------->AHL20(1)             <---------YAB1      <---------YAB1                      <---------AHL20(2)  ------>ZmHOX2a(1)<---------AHL20(2)             <-------TEIL       --------->AHL20(2) --------->TOE2(3)--------->AHL20(2)   ---------->DOF2     <---------YAB1      ---------->ID1      -- ---TEIL----------->GT1     --------->YAB1--------->At4g35610    --------->AHL20(2)     ----------->GT1   catcctcattttgttataaatataatgtaatcagcatgataaaaagctcacgttcagttttatgagaaaaaataaatttttgtccccattgtgtaatatt  10374800                                                                                                    -                                                                                                   <-                                                                                                  ---                                           <---------PCF2                 ------->GAMYB          ----                                   --------->AHL20(2)                  ------>NtERF2           <----- <---------TOE2(3)                 <---------AHL20(2)                  ----------->RAV1(1) <--------- <---------TOE1(3)             --------->AHL20(2)        ------->TEIL  --------->MYB52(1)  <---------DAG2 -------->DOF2                 --------->ATHB51<---------ALFIN1 --------->ARR14(2)---------->ID1<----   gtaaaggtttatttgggctaatgtgtaagcccattatttaaaatgggcccaacttcttgtacgttgaattcgccaacagagttcgtcgtctcacttttcc  10374900                                                             --------->GLK1(1)                                                        <------NtERF2                                                       ------>NtERF2                                                       ----------->RAV1(1)                                                      --------->RAP2.3(2)                                                      --------->DEAR3(1)                                                      --------->RAP2.3(3)     <---------RAP2.6(3)                             --------->ERF1    --------->RAP2.6(2)                              --------->RRTF1(1)   *TSS                                              <------NtERF2  <------NtERF2                                      --------->RAP2.6(1) ------>NtERF2                                       --------->RAP2.3(1) -------->ALFIN1                                     --------->ATERF1(1) --------MYB52(1)                  --------->YAB1   ------>NtERF2                                ---- ------>LBD16                --------->YAB1         <---------ATERF1(1)                   --------->ARR14(2) ----->LBD16       --------->TOE1(2)                --------->LBD16             --------->MYB46(3) <- ----LBD16         --------->TOE1(3)               --------->ANAC46             <---------ATHB12 ---- -DOF2  <----------DOF2     --------->ICU4         --------->LBD16        --------->At4g35610  <----- -----LBD16        --------->TOE2(3)              <---------LBD16         <---------At4g35610 ------>ZmHOX2a(1)   cggtggccgtctttttcaaaaccttagacaatgagtatcatgctatcaatttcccggcgccagaactcttatattctgctcaaccattctcgattcctcc  10375000                               <---------GLK1(1)                               --------->GLK1(1)                             <------NtERF2                            --------->LBD16                            <------NtERF2                           --------->RAP2.6(2)                       --------->TGA1a                       --------->ANAC46                       --------->ANAC58                       --------->ANAC58                       --------->MYB46(3)                     <---------ALFIN1                                                               -                     --------->MYB52(1)                                                             <                    --------->MYB46(3)                                                          -----                  --------->PCF2                                                              -------                 <---------WRKY18(1)                                                         -------- ----->LBD16    --------->WRKY12                                                             -------- --------ANAC46 --------->WRKY38(1)               <------ZmHOX2a(1)                          -------- -->NtERF2 --------->YAB1 <---------LBD16      <-----------RAV1(2)                          <-------- ----LBD16<---------YAB1--------->DEAR3(1) --------->GLK1(1)          ----------->GT1     --------->ANAC46   ggcgtttttcttatgatgttgacccacggccggaaatcaaatcggagagccaggaatttgtagtagtcaaatttgtgaaaactcttcaaaataccccgca  10375100                                                                                      <---------RAP2.3(1)                                                                                      ------>NtERF2                                                                                      <---------DEAR3(2)                                                                                      <---------MYB46(3)                                                                                      <---------ERF1                                                                                     <---------ANAC46                                                                                     --------->DEAR3(1)                                                                                     --------->ATERF1(2)                                                                                     <---------RAP2.6(2)                                                                                     <---------DEAR3(1)                                                                                    --------->ATERF1(1)                                                                                    <------NtERF2                                       ------->TEIL                                 ------>NtERF2                                       <---------TOE1(2)                            --------->DEAR4(2)                                       <---------ARR14(2)                          <---------RAP2.3(1)                                       --------->ARR14(2)                          <---------ATERF1(1)                                       <---------ARR11(1)                          <---------DEAR4(2)                                       <-----------ARR10                          <---------DEAR3(1)                                      <---------CCA1(2)                          <---------LBD16   <---------WOX13(1)                 <------------------------ANAC81           --------->O2      <-- --------->ATHB12                     <---------ARR14(1)                        <---------O2 >>>>>>>> -------->ICU4                      <---------ANAC58                            --------->ANAC46  --- ---------YAB1                      <---------ANAC58                         <---------ATHB12>>>>>>>> ------>RAV1(1)                    ---------->ID1                      --------->ANAC58     <------ZmHOX2a(1) -->LBD16 <------NtERF2     --------->ZAT18                       --------->ARR14(2)--------->RAP2.3(1) ->ANAC46 --------->ATERF1(1)   <----------DOF2              <---------MYB52(1) <---------bZIP60(2) ->ANAC58 --------->ALFIN1  --------->ZAT14         <---------At4g35610--------->ANAC58--------->ATERF1(1) ->ANAC58<-----------HVH21  <---------ZAT18      <---------At4g35610   --------->ANAC46<------NtERF2 -LBD16 <---------DEAR3(1)  <---------ZAT14   <<<<<<<<<TBF1 <----------DOF2<--------------OsCBT------   acatgattgggcgtcgagcgagtcgctaagtgcgcttgtcgtatcttcttcttctgcttctcctttagtattctcgcaaatcacgcggcggctaggatcg  10375200     --------->ANAC58                                            --------->GLK1(2)     --------->ANAC58                                           <---------GLK1(2)          --------->WRKY18(1) -------ARR14(2)                                            --------->REM1(2)             <---------- >ARR2                                                    --------->LBD16                <------MYB46(1) ------>ARR14(2)     <---------HSFB2a(2)                 <---------ANAC46                <------MYB83 >ARR1  --------->WOX13(1) <---------LBD16            --------->ANAC58             --------->ZAT14 >ZmHOX2a(2)         --------->HSFB2a(2)              --------->ANAC58        ---------->ID1      ---   tattctctagcaatctcgttcttcgagtacctggatgcgaagtctcagtctctgaaacgccgtgaagaatctctctccttggcgcttcagtcggtcattg  10375300                      --------->LBD16                              <---------KAN4(1)                    <---------LBD16                                --------->KAN4(1)                  <---------ARR14(2)                               <---------HSFB2a(1)                  --------->ARR14(2)                               --------->HSFB2a(1)                  <---------TCP15(1)                               --------->HSFC1(2)             ------->TEIL                                          <---------HSFC1(2)           <---------ZAT14                              ---------->DOF2           --------->ZAT18                          ------>ZmHOX2a(2)            <---------YAB1      <---------MYB52(1)                            ============================HOX2a_HOX2a    --------->ATERF1(2)                            =============================HOX2a_HOX2a    <---------ATERF1(2)--------->O2                <------ZmHOX2a(2)     ============================   <---------LBD16<---------TCP20                 <---------ARR11(3)     ------>ZmHOX2a(1) -HVH21    --------->ZAT14                        --------->ARR14(2)--------->KAN4(2)         <------ ------>ARR14(2)  --------->PCF2              --------->ANAC46    <---------KAN4(2)           -------   aattcgccggtagtgaaccggacccgcgtgataaacttctccgtctctacgagatcgccaaagagaagaacattcctcttactatcgttgccactaagct  10375400  Previous    Next  AGI:  At5g28460.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G61520.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G28370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39647.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10374903    to: 10377308    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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