Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         ------->TEIL      <---------CCA1(2)  <---------ANAC46 --------ANAC58                                             --------->MYB52(1) --------ANAC58            --------->AHL20(1)          ---------->DOF2 -----TEIL                 <---------AHL20(1)         <---------AHL20(2)                    <-------- -->MYC2                   <---------ARR11(3)     <--------HAHB4                   <---------WOX13(1) ---MYC2                   --------->ARR11(3)     --------->ATHB12               --------->ATHB12 ---MYC3                --------->AHL20(2)      --------->GLK1(2)               <---------YAB1 -->MYC3       --------->REM1(1)         ---------->DOF2<---------TOE2(3)     --------->CCA1(2)   tgcgtcttgtatctactacatctccaaaaaatatttgttttaaaaaagagaatcatttaaagtaatggaaagacttggtgatatgattgccattttactt  9852300                                                                                                   --                                                                                                   <-                                                                                                  <--                    <---------ALFIN1                                                  --------->ANAC55(2)               --------->GLK1(1)               --------->AtMYB61                      <---------ANAC58               <---------GLK1(1)            <-----------GT1               <---------DAG2     --------          ---------->DOF2              <----------DOF2                    <----------DOF2    <-------         --------->AHL20(2)        <---------ATHB12              --------->ANAC58     <---------ANAC46 ---GT1  <---------AHL20(2)      --------->WOX13(1)              --------->ANAC58     <---------ANAC58   cttatctacatttaaagaaatcccacttcaagactcaatcactttaataccactcccatctatcttcaagctaatactttttgtattttcgtgattttat  9852400                                                          --------->ANAC55(2)          --------->ARR11(3)                              <---------ANAC55(2)          <---------GLK1(2)                              ------->TEIL          <---------ARR11(3)                             <-------TEIL        <---------TOE2(3)                            <---------------AtSPL3         <---------ANAC58        ----------->ARR10                            <---------------AtSPL8         <---------ANAC58 ------->AHL20(2)                                    --------------->AtSPL8   --------->ARR11(3) --------AHL20(2)                            <---------ALFIN1           --------->YAB1   ------>ZmHOX2a(1) -------AHL20(2)                             --------->ANAC46          --------->At4g35610 ->AHL20(2)             <---------AHL20(2) <---------ALFIN1           --------->ANAC58 --------->bZIP60(2) --AHL20(2)    <-----------GT1             ----------->RAV1(1)        --------->ANAC58------>NtERF2   tttaaatactaagatttttgcctcattttatcaaacacttgaaacccacactatatatgtacgtgaatgagcaagcagaagttattgcctcctcactctc  9852500                                               <-----------ARR10                                              <---------CCA1(2)                                          --------->ANAC58               --------->TOE2(3)          --------->ANAC46             <---------YAB1               --------->ANAC58          <---------AHL20(2)            --------->ANAC46          --------->AHL20(2)          <---------ALFIN1       --------->AHL20(1)            <---------ZAT14                                   --------->AHL20(1)       <---------ARR11(3)            <---------REM1(2)                                 --------->AHL20(2)       --------->ARR11(3)            --------->ZAT14                                   <---------AHL20(1)       <---------AHL20(1)       ------>ZmHOX2a(1)           <---------ALFIN1      --------->AHL20(2)   taacttgaatattttattcttaattctcttcttcctctctacacacccaaatctcttctccctcactctctgtctctctatgtataaaatataatatgtg  9852600                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                                                                <----                                                                                              -------                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                 --------->ANAC46                                                       xxxxxxxxxxxxx                 --------->ANAC55(2)                                                    xxxxxxxxxxxxx                 <---------O2                                                           xxxxxxxxxxxxx                 <---------ANAC58                                                       xxxxxxxxxxxxx                 <---------ANAC58                                                       xxxxxxxxxxxxx                <-------TEIL                                                            xxxxxxxxxxxxx              --------->ARR14(2)                                                        xxxxxxxxxxxxx              <---------ARR14(2)                                                        XXXXXXXXXXXXX           ----------->TBP                                          *TSS----------->GT1XXXXXXXXXXXXXX          <-------TEIL   --------->AtLEC2                  ==========================================       --------->At4g35610                                 ---------->DOF2   --------->ZAT6   -------   tgtgtaagtagctacatatacgtggccatggagattatttggagtttgatgatgcaagagagaaagtaatgggtgagtaacacttgatggagaagcaggg  9852700 -------->TOE1(2) -------PIF4 ------>MYC3 ------>PIF4 -------MYC2 -------MYC3 -------PIF5 ------>PIF5                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ------>MYC4                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------MYC4                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>MYC2                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------->TGA1a                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) --------TGA1a                                     xxxxxxxxxxxxxxxxx>smallRNA(le3) --------->OsbHLH66                                xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------OsbHLH66                                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----ZAT18                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(s2) -->ANAC58                                        <-------MYC4 xxxx>smallRNA(i)                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxx>smallRNA(s)                                 <-------PIF4 xxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxx>smallRNA(si3)                             ------->MYC4 xxxxxxxxx>smallRNA(s2)                           <XXXXXXXXXXXXXXXXXXXXMIR164A/B xxxxxx>smallRNA(fl3)                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxx>smallRNA(le3)                             ------->PIF5           <---------CCA1(2) xxxxxxx>smallRNA(fl3)                            ------->MYC2        ------->MYC3 xxxxxxxx>smallRNA(si3)                           <-------PIF5        -------->ABF1 xxxxxxx>smallRNA(le3)                            <-------MYC3        ------->MYC2 xxxxxx>smallRNA(l2)                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxx>smallRNA(i2)                              <-------MYC2        ------->MYC4 xxx>smallRNA(s)                                  ------->PIF4        <-------MYC2 xxxxxxx>smallRNA(i2)                             ------->MYC3        <-------MYC4 xxx>smallRNA(i)                                 --------->O2         <-------MYC3 xxxxxxx>smallRNA(se3)                           --------->TGA1a     <---------O2 xxxxxxx>smallRNA(si3)                           <---------ANAC55(2) --------->TGA1a                < xxxxxx>smallRNA(se3)                            <---------O2        --------->O2                   - xxxxx>smallRNA(se3)                             --------->ANAC55(2) <---------TGA1a               -- xxxxxxxxx>smallRNA(i2)                          <XXXXXXXXXXXXXXXXXXXXMIR164C     <---------ALFIN1<-- xxxxxxx>smallRNA(s2)                --------->YAB1xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->LBD16 XXXXXXX>MIR164C            <---------ANAC58     <---------TGA1a   <---------ALFIN1   <---------HSFB2a(2) XXXXXX>MIR164A/B           <---------ANAC58    <---------TOE1(2)----------->RAV1(1)  --------->HSFB2a(2) ========bZIP_DOF        <---------MYB52(1)     ------------>OsbHLH66<---------ANAC55(2)   <------ZmHOX2a(1) -->ANAC58             ------>ZmHOX2a(2)       <------------OsbHLH66 --------->ANAC55(2)--------->LBD16   cacgtgcgaacacaaatgaaatcgatcggtacttgttgatcatattttcgcacgtgttctactactccaacacgtgtctctccccctccccgaggatgca  9852800                                  <---------ANAC58                               <-----------GT1                          <---------AHL20(2)                          --------->AHL20(2)  <<<<<<<<<WRKY18         <---------AHL20(1)                                 <---------ANAC46  <---------WRKY12        --------->AHL20(1)                         <---------ANAC46 -----------HVH21        --------->AHL20(2)                          <---------ANAC58 -------->TOE2(3)        <---------AHL20(2)       <---------DAG2     <---------ANAC58 ------->YAB1        --------->AHL20(2)        <-----------GT1--------->REM1(1)----------->GT1 -------ATHB12     ----------->GT1<---------ANAC58<----------DOF2    --------->ANAC55(2)   atcgtcaatggatagaacagaatgtaaataaatttagcgttctaagtttttactttattagactacatcatgcgtattagggtgtatatatgagacatga  9852900                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                     <----------DOF2                                           <---------ANAC58  <---                  <---------ALFIN1                                      <-----------GT1          ----             <-----------GT1                                       --------->ANAC55(2)        <------          <---------MYB46(3)                                       <---------ANAC55(2)      <--------         <---------WOX13(1)   <-----------GT1      <----------DOF2 <---------ANAC46         ---------       --------->ATHB12    <---------ZAT6       <-----------GT1    <---------ANAC55(1)      <--------  <---------TOE2(3)  <---------DAG2   <----------DOF2        --------->DAG2    <---------ANAC55(2)  <---------YAB1 <---------ZAT18      <---------DAG2    --------->At5g28300    <---------ANAC58 <----   agttaacattgattgttactccactttttgtgttacattacttttttttttttctttcggtaaaaggttatgtgttacattacttgagtaggcagtggta  9853000      -------->HAHB4     --------->ICU4   <---------ICU4   --------->YAB1  <---------YAB1  --------->ICU4 ----->ANAC55(1) ----->ANAC58                                                                             <---------YAB1 ----->ANAC55(2)                                                                      <---------AHL20(2) ----->ANAC58                                                                       <---------AHL20(2) ------ANAC55(2)               <---------ANAC55(2)                                  <---------YAB1 ------->GT1                   --------->ANAC55(2)                                 --------->TOE2(3) ---SPL7                 --------->DAG2                                            --------->YAB1 -ZAT6<---------ICU4    ---------->DOF2                               <---------ICU4--------->AHL20(2) >ALFIN1             --------->YAB1                     --------->ANAC58        --------->YAB1 -------AtSPL8      <---------YAB1                      --------->ANAC58     --------->YAB1 ---TEIL          --------->YAB1             <-------TEIL--------->ICU4     --------------->AGL15   cgtaataataatgcatacgagtataataaagtcatgtgatatagacatacacagtagtaagcattgatatagtcatttctcataatattaatatgataga  9853100                                                                                                    -                                                                                                   --                                      <---------ZAT14                                      <---------                                      --------->ZAT14         <---------ETT(2)             <---------DAG2                                 <---------YAB1            <---------ANAC46              --------->At4g35610                               <---------GLK1(1)       <---------GLK1(1)                 <---------At4g35610                <---------AHL20(2)--------->ATHB12    ------->TEIL                  --------->ANAC58-              <---------YAB1  --------->ARR11(3)   <---------ATHB12                 --------->ANAC58<         <---------ZAT6       <---------ARR11(3) ------>MYB83 --------->ETT(2) <----------ID1    <---    <---------ANAC46--------->ANAC55(2)          ------>MYB46(1)               <---------ETT(1) -----   aatgtttcttagagttatttttatgtaatatagatatcattgaactgaaccaaatgaatttccgtcgagagtattgaaattgcgacaagacagctttata  9853200  Previous    Next  AGI:  At5g27807.1    Description:  MIR164/MIR164C; miRNA Range:  from: 9852668    to: 9852787    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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