AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                                                <---------TOE2(2)
                                                                                <---------TOE1(2)
                                                <---------ARR11(1)              --------->SPL7
                                                <---------ARR11(3)          <---------------AtSPL3
                                     --------->ZAT2                         --------------->AtSPL3
                                     <---------GLK1(1)                    --------->KAN4(2)
        <---------ARR14(2)           --------->GLK1(1)                   --------->KAN4(1)
        <---------GLK1(2)            <---------At4g35610                 <---------KAN4(1)
       <------ZmHOX2a(1)             --------->At4g35610    ----------->GT1 <---------------AtSPL8
      <---------YAB1                 <---------ZAT2         <---------MYB46(3)<---------SPL7
<---------YAB1                <----------DOF2   <-----------ARR10       <---------YAB1
---------ANAC58      <---------RAP2.6(3)        --------->ARR14(2)     <---------GLK1(2)     <------
---------ANAC58     --------->RAP2.6(2)        <---------CCA1(2)     --------->ICU4       <---------DEAR3(1)
>GLK1(2)--------->ARR14(2)    --------------------->WRI1<-----------RAV1(1) --------------->AtSPL8
 
atgcttattaggattctcttaagccgtctatttctttgggagctccatccatatctattctggtggtaaacaaagattattcgtacgttttattcggcga  9819900
                    <---------ANAC58             <---------ALFIN1
                    <---------ANAC58            <---------ZAT18
                <------MYB46(1)                 --------->ZAT14
                <---------ANAC58       <---------At4g35610
                <---------ANAC58       --------->At4g35610
                <------MYB83        <---------At4g35610   --------->WRKY38(1)
               --------->MYB111(1)<---------RAP2.6(2)   --------->At4g35610       --------->YAB1
            <---------ARR14(2)  <---------MYB46(3)      <---------At4g35610    ----------->GT1
          --------->LBD16   <---------DEAR3(1)  --------->SPL7            --------->At4g35610
        <---------LBD16  --------->ETT(2)     <---------SPL7            <-------MYC3
      <---------ALFIN1   --------->DEAR3(1) --------------->AtSPL8      ------->MYC3
     --------->MYB46(3)  ----------->HVH21------------------>SPL14      <-------MYC2
    ------>ZmHOX2a(1)    <---------DEAR3(1) --------------->AtSPL3      ------->MYC4              <-
---DEAR3(1) --------->ARR14(2) --------->ALFIN1 <---------ZAT14         ------->MYC2             <--
 
tgttttcctccaccggatttggtgctcgtcgacggtggaggctgatgtccgtacacttccgatgactcatttacatgtgctgtagttataatctcatgtc  9820000
      <----------DOF2
 ------->MYC4
 -------->ABF1
 <-------MYC3
 <-------MYC2                            <-------GAMYB
 ------->MYC2                            <---------At4g35610
 ------->MYC3                           <---------MYB46(3)
 <-------MYC4                    <----------DOF2                  <-----------RAV1(1)
--------->ANAC55(2)             ------>ZmHOX2a(2)                 <---------MYB46(3)
<---------TGA1a                <---------RVE1(1)               <-----------RAV1(1)
<---------ANAC55(2)            <------ZmHOX2a(2)              ------>ZmHOX2a(2)
<---------O2                  --------->ARR11(3)            --------->ARR11(3)
--------->O2                  <---------ARR14(3)            <---------ARR14(2)
=================bZIP_DOF     --------->ARR14(3)            <---------ARR11(3)           <---------At4g35610
=================bZIP_DOF     <---------ARR11(3)            --------->ARR14(2)           --------->At4g35610
--------->TGA1a               --------->ARR14(2)            <---------AGP1       <---------AHL20(2)
--------ALFIN1                <---------AGP1              <---------MYB46(3)   <----------DOF2     <
-------REM1(2) ----------->GT1<---------ARR14(2)      <-----------RAV1(1)  <----------DOF2--------->YAB1
 
aacacgtgtctttggatagagtcaaatgttgaagatcttttggctgttgatattaatctggtggatctgttgttggacctttcttttatttcagcataat  9820100
                                   <---------TOE2(3)
           --------->ANAC58    <-------GAMYB
           --------->ANAC46   <---------MYB46(3)
           --------->ANAC58   --------->MYB55(2)
         <-----------GT1  <---------AtMYB61                                        ----------->GT1
      <----------DOF2   <----------DOF2             --------->AHL20(2)  <-----------GT1          ---
---------REM1(1)        <---------MYB52(1) <-----------GT1    ---------->DOF2<---------ANAC46-------
 
cgttgtaggcttttacgccttatacccctttggtggttaatgaaatttacttcgattaaaaaaaaaaaagaattttttcttcgtggaggtaaaaacaaaa  9820200
                                                    *TSS
                                                  <---------ANAC58
                                                  <---------ANAC46
                                     --------->ANAC58       <---------HSFB2a(2)
          ----------->GT1            --------->ANAC58       --------->HSFB2a(2)        <---------ZAT2
          <----------ID1             --------->ANAC46       <---------HSFC1(1)         --------->ZAT2
------>AHL20(2)                  --------->YAB1   <---------ANAC58      >>>>>>>>>TBF1  <---------At4g35610
--->DOF2---------->DOF2------------>CBF  --------->MYB52(1) --------->HSFC1(1)         --------->At4g35610
 
gaaaatacagaaaaagaaaaatccactacaatttaagcataagcaaacgaatggtgtgttcttctcgaagtagaagaagaagagagagtcagcttccaaa  9820300
                                                                                                   <
                                                                                                ----
                                                                                              ------
                          --------->ALFIN1                          <---------ARR14(2)        <-----
                  --------->GLK1(1)                                 --------->ARR14(2)       <------ZmHOX2a(1)
                  <---------GLK1(1)                                 <---------ARR11(3)       -------
                <------NtERF2                  <---------ARR11(3)   --------->ARR11(3)      <-------
               --------->LBD16   <------ZmHOX2a(1)       ------->TEIL                   --------->ANAC46
              <---------ANAC46   ================HOX2a_HOX2a ---------->DOF2           <---------LBD16
             <---------LBD16 <---------ANAC46  --------->ARR11(3) ----------->ARR10  <---------REM1(2)
    ----------->GT1   ---------->DOF2     <------ZmHOX2a(2)--------->TOE2(3)<<<<<<<<<TBF1  ---------
 
gaattgatagtaaaatggcggaaatcaaagtggagaggagtcacgatcaacatctccttgaacctaaagaagatacttcttcttcttatacacggaggag  9820400
                                                                <---------CCA1(2)
                                                               ------->TEIL
                                                               --------->ARR14(2)
                                                               <---------ARR14(2)
                                                            --------->ANAC58
                                                            <---------ANAC55(2)
                                                      ------>NtERF2
                                                   <-----------HVH21
                                                  <-----------RAV1(1)
                                           ------>NtERF2    --------->ANAC58
     <---------ARR14(2)                    <------NtERF2  --------->SPL1(1)
     --------->ARR14(2)                   --------->DEAR3(1)--------->ANAC55(2)
    <------NtERF2                         <---------ATERF1(1) <---------CCA1(2)
   --------->LBD16                        ------>NtERF2  <---------SPL7
  --------->LBD16                       --------->At4g35610--------->SPL7
 <---------LBD16                        <---------LBD16 --------->DEAR3(1)
---------DEAR3(1)                       --------->LBD16<---------------AtSPL3
----->ATERF1(1)                         <---------At4g35610<-------TEIL
--->ARR14(2)                           <---------ANAC58<------NtERF2<----------DOF2
----ARR14(2)                 --------->ETT(2)  <---------ALFIN1<---------ARR11(1)                ---
-->ATERF1(1)                 <---------ETT(2) <------NtERF2------->TEIL                          ---
--ATERF1(1)           <---------ANAC58 <---------ANAC58--------------->AtSPL3                    <--
>ALFIN1               <---------ANAC58<---------LBD16<---------ETT(2)                            <--
 
cctcgccggaaacagaccaagacttgcttctctcgacatattccgcggcctcactgtcgccgtacgtatctctttcttctctctctctctacttgtgcga  9820500
                                                                              <---------WOX13(1)
                                                                            <---------ICU4
                                                                            --------->YAB1
                                                                            <--------ATHB1
                              --------->YAB1                                -------->ATHB1
                           --------->YAB1                                   --------->ATHB12
              <----------DOF2<---------YAB1                                 <------------ATHB5
         ---------->DOF2  --------------->AGL15                            <---------ATHB51
     --------->ZAT6       <---------------AGL15                            <---------YAB1         <-
------>HSFB2a(1)   <---------AHL20(2)               ----------->TGA1       <---------ATHB12    -----
------>HSFC1(2)    --------->AHL20(2)               ----------->HVH21      --------->ICU4     <-----
-------HSFB2a(1)  <---------AHL20(2)     <---------GLK1(2)              ------------>ATHB5 ---------
-------HSFC1(2)   --------->AHL20(2)   <---------YAB1          <------ZmHOX2a(1)          <---------ANAC46
 
aatttcgaactctaaagctttttaaattactcataatagttgatgattctcgttgatgacgctggaggagactggccaatgattgctcatgctccgtgga  9820600
                                              <------MYB83
                                             <---------AtMYB61
--------MYB46(3)               <----------DOF2<------MYB46(1)        ---------->DOF2
------->AtMYB77            <----------DOF2  <---------MYB52(1)     ------>ZmHOX2a(1)
----SPL7            <---------MYB52(1)    --------->ATHB12        --------->TOE2(3)              ---
>LBD16    <---------At4g35610  --------------------->WRI1         --------->TOE1(3)       <---------GLK1(1)
 
acggttgcaatttggctgatttcgttatgcctttctttttgttcatcgttggtgtctccattgctctctccttaaaggtcaatttcgaacttgaaatctc  9820700
                                                             <---------AHL20(2)
                                                             --------->AHL20(2)
                                                             <---------AHL20(1)      <------MYB83
                                                             --------->AHL20(1)      <------MYB46(1)
                             --------->MYB52(2)             --------->AHL20(2)       <---------MYB46(3)
                           <---------MYB52(1)        --------->GLK1(1)              <---------AtMYB61
                    <---------AHL20(2)              --------->ARR14(2)             <--------P   ----
<---------ICU4  <---------ANAC46    <----------DOF2 <---------ARR14(2)           <---------HSFB2a(1)
<---------GLK1(2)   --------->AHL20(2)             <------ZmHOX2a(1)   <---------ANAC58   <---------HSFB2a(2)
------>YAB1<-----------RAV1(1)  <-----------GT1 <---------At4g35610    <---------ANAC58   --------->HSFB2a(2)
 
tcagaattgcgatgttgttgcatataaatcgttttttgcctttgaatattcagaggatttcgaataaatttgaagcttgtaagaaggttggttttagaac  9820800
<- Previous    Next ->

AGI:  At5g27730.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47900.1); similar to Os01g0931100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045294.1); similar to hypothetical protein OsI_004939 [Oryza sativa (indica cultivar-group)] (GB:EAY77092.1)
Range:  from: 9820253    to: 9823090    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version