Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <--------P                       <---------WOX13(1)                      <-------GAMYB                      <---------ANAC58                      <---------ANAC58                     --------->MYB55(2)                     <------MYB83                     <---------MYB46(3)                <-------GAMYB<----------DOF2    <-------TEIL     <------MYB46(1)                  <---------DEAR3(2)                         ---- >ZAT2              <---------AtMYB61                 <---------MYB46(3)                         ---- -ZAT2    <---------TOE2(3)                          --------->ETT(1)                          <----- >At4g35610        <--------P                        <---------DREB2C(2)     --------->YAB1<--------- -At4g35610 --------->TOE1(2)                      ------------>AtMYB77   --------->WOX13(1)   <-----   tcgaggttcaataacgttcgagttggttgataatttagagaggtctgaagtattgtcggttacaaaatagctttaacaatcacattgctgaggctttaag  9815200                                                                                    <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(1)                                                                                   <---------AHL20(2)                                                                               --------->AHL20(1)                                                                               --------->AHL20(2)   --------->YAB1                                                             --------->AHL20(2) ----->TOE1(3)                                                                <---------AHL20(2) ----->TOE2(3)      ----------->ARR10                                   ----------->GT1 ----TOE1(3)    <------ZmHOX2a(1)        <----------DOF2                <---------REM1(1) --------->HSFB2a(2) -DOF2 ---------->DOF2   ----------->HVH21                      <----------DOF2<---------AHL20(2) ----TOE2(3)  <---------TOE2(3)    <---------O2       --------->ANAC46  <---------ANAC46  <---------HSFB2a(2)   cttaattgtaaaagtttaggattagatttgacatatcacttggctttgtttgattcacacagttcgccttagtgatgtaaattaattaatttcgagagca  9815300                 ----------->GT1             <---------ICU4             --------->ATHB12                                                     --------->ANAC58             -------->HAHB4                                                       --------->ANAC58             --------->YAB1                                                       --------->ANAC46            --------->ICU4                     --------->MYB46(3)              --------->ARR14(2)            <---------ATHB12          --------->ATHB12                    ---------->DOF2            <---------YAB1            <---------ICU4                  <---------ETT(2)           <---------TOE2(3)         --------->MYB46(3)            <---------REM1(1)          --------->YAB1        --------->ANAC46                   <---------ANAC46       --------->AHL20(2)        <---------AHL20(2)    <-----------RAV1(2)             <----------DOF2  <---------ARR14(2)  --  --------->AHL20(2)    <-----------GT1      --------->MYB52(1)  <---------ANAC46 <----------ID1  ---   tcaataacatattaatgattagttattttccaccaggtaaccattgccaacggctacaaatacactttggtgtagacaaagtatacgaaaaattaaaaca  9815400                                                                --------->ANAC58                                                                --------->ANAC46                                                                --------->ANAC58                                                              <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <xxxxxxxxxxxxxxxsmallRNA(si3)                                                              <xxxxxxxxxxxxxxxsmallRNA(le3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                             <xxxxxxxxxxxxxxxsmallRNA(le3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <xxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                           <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          --------->At4g35610                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                                        --------->MYB46(3)                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                     ------>ZmHOX2a(1)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                --------->GLK1(1)                                                <---------GLK1(1)                                               <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                               <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxsmallRNA(le3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(i)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxsmallRNA(si3)                                <---------LBD16<---------ARR14(2)                               ----------->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->SPL7                            <---------GLK1(1)  --------->ARR14(2)                        <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ARR11(3)                  <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxsmallRNA(s)     --------->ARR11(3)              <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxsmallRNA(s)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <------NtERF2  --------->GLK1(1) <xxxxxxxxxxxxxxxxsmallRNA(s)            ------>NtERF2  <-----------HVH21<xxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->LBD16<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------LBD16 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------SPL7           <---------ANAC46--------->ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(s)           --------->LBD16 <---------ARR14(2)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------LBD16 <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         ------>NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------At4g35610<xxxxxxxxxxxxxxxsmallRNA(le3)--------->MYB52(1)               <---------WOX13(1)      --------->At4g35610--------->LBD16<xxxxxxxxxxxxxxxxsmallRNA(fl3)       *TSS     <------------CBF ------->DAG2<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         -- ------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR11(3)         --------->MYB52(2)    <--   aaaagctccgatgccgggaatcgaacccgggtctcctgggtgaaagccagatatcctaaccgctggacgacatcggattagttggctagattgatatgtt  9815500                             --------->DAG2                            ---------->DOF2                            <---------WRKY18(1)    <---------AHL20(1)   --------->YAB1                     *TSS      --------->WRKY12           ----    <---------ARR11(3)  <---------YAB1                      --------->DAG2         ---------->DOF2 ---------->CBF        --------->AHL20(2)      --------->ZAT18        --------->WRKY38(1)       <---- ---------GT1   ----------->GT1   --------->MYB52(1)       ---------->DOF2<---------MYB59--------->AtMYB61   taacaatatatactaaaacagataatattataaagttaagggactcgagtgcaaaactcaaaaaagttcccattgacctaaaactaaaagaccaccgatt  9815600                                                                         ------>NtERF2                                                                        --------->ANAC58                                                                        --------->ANAC46                                             ----------->GT1            --------->ANAC58                                             --------->ANAC58    <---------HSFB2a(1)                                            --------->DAG2       <---------HSFC1(2)                                    --------->At4g35610          --------->HSFC1(2)                                 ---------->DOF2           ----------------------->TaNAC69(2)    --------->GLK1(1)          --------->LBD16      --------->MYB52(1)  --------->DEAR3(1)    <---------GLK1(1)         --------->LBD16--------->ANAC58    --------->HSFB2a(1)             ---- ----->ATHB12          <<<<<<<<<WRKY18     ---------->DOF2--------->GLK1(1)                   <------ ---TEIL             <-----------HVH21----------->GT1    <---------GLK1(2)                 ------>ZmHOX2a(2)   cattagaaatccatccctctcactgtcaaaacccgagaagcagaaaaaagcaaaaaacagatttcgaagtttcgacgcctctctattcttcgatctcttt  9815700                                        <-----------GT1                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                        <---------RVE1(1)                         <---------ARR14(2)                   <XXXXXXXXXXXXXXXXXXXXMIR1887                         --------->ARR11(3)            <----------DOF2         --------->At4g35610  <                         --------->ARR14(2)            <---------DAG2          <---------At4g35610  <                         <---------ARR11(3)           <---------DAG2 <---------AHL20(2)             < ----->YAB1              <-----------ARR10         ---------->ID1 --------->ARR11(3)    <---------TOE1(3) ----DOF2 --------->DOF5.7(2)<---------LBD16      <-----------GT1 <---------GLK1(2)     <---------TOE2(3)   catatttgaatcgttcaccttcttgccgatcttcggagtatattacaaggtttctcccttttctctcagattttttttagtagctgaattagggtttttg  9815800                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                               <---------GLK1(1)                                                                               --------->GLK1(1)                                                                              --------->ARR11(3)                                                                              --------->ARR14(2)                                                                         --------->MYB52(1)              <---------ANAC58                                       <-------TEIL              <---------ANAC58                                      <---------ARR11(3)--------->ARR11(3)   --------->ARR14(2)                                     --------->TGA2(1)   <---------ARR14(2)   <---------ARR14(2)                          <---------YAB1      <---------GLK1(2)  <---------ARR11(3)  <---------MYB52(1)           ---------->DOF2 <-----------GT1  <-----------RAV1(2)  <---------CCA1(2) ---------ANAC46        ------->TEIL     <---------TOE2(3)<---------bZIP60(1) ------->TEIL ---------ANAC58      --------->LBD16    <---------TOE1(3)<---------TGA2(1)   <---------ARR11(3) ---------ANAC58    <---------LBD16----------->GT1        --------->bZIP60(1) <---------AGP1<--------   ttccgttttcgctattgcttcttccgcatcttataaagggtttaatgttatacttctctgatgtcatcaggttcttaacggatctctaaatcttctgatt  9815900                                                           <---------TOE2(3)                                                           <---------TOE1(3)                                                          <---------DOF5.7(2)                                                        --------->DOF5.7(2)                                                      <---------ANAC46                                                  <---------ANAC58                                                  <---------ANAC58                                              <---------ANAC58                                     <-             <-----------GT1                  <---------ANAC58                      <---------At4g35610          ----------->GT1                  <----------DOF2---------->DOF2        ---------->DOF2  ---        <--------P                   ---------->ID1   <---------ANAC58 <---------AHL20(2)     <------ -YAB1----------->GT1               <-----------GT1   <---------ANAC58 <---------YAB1   <---------MYB52(1)   taagaagatggtaagttactagacaaacttagggtttttttccttctttcttgtttgcgttaaagtttcaatttttattaactgaaagctgttgttttga  9816000     <---------ANAC58     <---------ANAC58                                                                            <--- --------AHL20(2)                                 ----------->GT1              ----------->GT1   <--- ------>AHL20(2)   --------->At4g35610     ------>ZmHOX2a(1)             <---------YAB1          ---- ---YAB1  ------>ZmHOX2a(1)  --------->At4g35610<---------ANAC46    --------->ATHB12             ----   ttttatagcttcctctatcgctgcttaaaactgctcaagggcatcctatggtgagtaaaatttcgacccttgattacaattttgttatatatgaagtgaa  9816100  Previous    Next  AGI:  At5g27710.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO17522.1) Range:  from: 9812992    to: 9815424    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g27715.1    Description:  pre-tRNA. tRNA-Glu (anticodon: TTC) Range:  from: 9815406    to: 9815477    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27720.1    Description:  EMB1644 (EMBRYO DEFECTIVE 1644). similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G20580.1); similar to Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10) (GB:Q43582); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 9815560    to: 9817603    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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