Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ARR14(2)                                           <---------HSFC1(2)                                           <---------At4g35610        --------->ARR14(2)                 --------->HSFC1(2)            --------->ANAC58       <---------ARR14(2)                  --------->At4g35610           --------->ANAC46 -------->CCA1(2)           --------->ANAC46<---------GLK1(2)            --------->ANAC58 >At4g35610        <---------YAB1       <---------At4g35610 ------>ZmHOX2a(1)           <---------YAB1   agataagccgatttcgctactctcatagacacagaactatgtagcagcttctcaaaatactcctctccttgtttcaagccatgagttttgatgatcaaat  9694400                                              <-----------GT1                                           <---------GLK1(2)                                         <---------YAB1        --------->At4g35610                                  <---------AHL20(1)   --------->ANAC46                                  --------->ARR11(3)   --------->ANAC58                                  <---------ARR11(3)   --------->ANAC58                             -                             --------->AHL20(2)      <---------ALFIN1                             ---                     --------->ZAT6  <----------DOF2--------->MYB46(3)     --------->ANAC46 ---------   ccaatctaagagcaatgtcataaacactaaattcaatatctttttgattctccatccactccatcatctgtatatacacacattactggcaaaatcaaaa  9694500                                                                                                  <--                                                                                                  ---                                                                                                  ---                           ----------->GT1                            ------>ZmHOX2a(2)           <--                           <----------ID1               ------>ZmHOX2a(2)                         <--                         <---------TOE2(3)             <------ZmHOX2a(2)                          ---                        --------->MYB52(1)            --------->ARR11(3)                   --------->WOX13(1) --------->DOF2    <---------AHL20(2)                 <---------ARR11(3)                 <---------ATHB12 ------>YAB1       --------->AHL20(2)     <---------LBD16  --------->MYB52(1)          <---------GLK1(1) >YAB1             <---------YAB1        ----------->RAV1(2)  --------->ATHB12         --------->GLK1(1)   tcaaaagcttagttctcagttttaattaagggaaaaatttcaaacctggagagcgagatcgtaacgatttgatctaatgagacgcttggaaatcaatcgg  9694600                                           <---------At4g35610                                -------                                     ----------->RAV1(2)              --------->HSFB2a(1)     -------                                 <---------ANAC58                 --------->WRKY38(1)         -------             --------->ANAC58    <---------ANAC58                 --------->WRKY12  <---------ARR14(2)           --------->CCA1(2)    ------>ZmHOX2a(2)              <---------ANAC46     <-----------ARR10      ---------->DOF2           ==============HOX2a_HOX2a      <---------O2         <---------ARR11(3) -------ZAT2 --------->ANAC58  ===============HOX2a_HOX2a    <-----------HVH21      --------->ARR11(3) ------>ZAT2--------->RAP2.6(3)<------ZmHOX2a(2)            <---------ANAC46        --------->ARR14(2) ------>GLK1(1)               --------->ARR14(2)     <---------DOF5.7(2)   --------------------->WRI1 -------GLK1(1)<------NtERF2  <---------ARR14(2)    ----------->HVH21 <---------HSFB2a(1)   --------- -------At4g35610  <---------WRKY18(1) ------>ZmHOX2a(1)   ------>NtERF2   <----------DOF2  ========= ------>At4g35610 ----------->HVH21<---------MYB52(1)--------->MYB52(1) <---------MYB52(1)------>ZmHOX2a(1)   agctccgataaagagacggcatgacccgaatcgatccgttcctgaagcagagaggtaacgctgcgtcgtggaccgttctttctcagtatctccttcaagc  9694700                             --------->MYB46(3)                             --------->HSFB2a(1)                     --------->ALFIN1                   <---------ANAC58                   <---------ANAC46                   <---------ANAC58                   <---------bZIP60(2)                   <---------O2                   --------->TGA1a                   <---------TGA1a                   --------->O2                   <---------ANAC55(2)                   <---------ANAC55(1)                   --------->ANAC55(2)                  ----------->STF1                  ----------->bZIP911(2)                                                            -                  ----------->bZIP910(1)                                <---------ANAC46           --                 <---------TGA2(2)                                   <---------AtMYB61             --                ----------->TGA1--------->At4g35610                  --------->ALFIN1              --    <---------ARR14(2)       <---------HSFC1(2)                      <---------DEAR3(1)       -------    --------->ARR14(2)<-----------HVH21                             <---------MYB52(1)        ------- -->ANAC58      ----------->HVH21                                 <---------DEAR3(1)          ------- -->ANAC58    --------->At4g35610                                 <---------DREB2C(2)         ------- -->ANAC46    <---------At4g35610                                <---------LBD16              ------- ->DOF2  <---------RAP2.6(2) --------->HSFC1(2)    ------->TEIL ------>NtERF2 ------->TEIL   -------- ============================bZIP_DOF         --------->CCA1(2)--------->ANAC46         --------->ANAC46   tattccgatttgcgactgatgacgtgtccgaaccatctgcaagtgaagacacgagccttgatactacgccggtggtgttgaacctcgtcttcgcaaccgc  9694800                                     <---------ARR14(2)                                     --------->ARR14(2)                                  --------->ANAC58                                  --------->ANAC58                                  --------->ANAC46                                 ------>NtERF2                                 <------NtERF2                                 --------->LBD16                                --------->RAP2.3(2)                                --------->DEAR3(1)                                --------->RAP2.6(2)                               <------NtERF2                               --------->ATERF1(1)                               --------->RAP2.3(1)                              <---------ATERF1(1)                              ------>NtERF2                              <---------DEAR4(2)                              <---------RAP2.3(1)                             --------->RAP2.3(2)                             --------->DEAR3(1)                             <---------DEAR3(1)                             --------->RAP2.3(3)                             --------->RAP2.6(2)                            --------->ATERF1(1)                            --------->RRTF1(1)    --------->MYB46(3)      --------->RAP2.6(1)    <---------MYB52(2)      --------->DEAR4(2)  --------->MYB52(1)        --------->RAP2.3(1) ------>GAMYB               --------->ORA47(2) ------->ANAC58             --------->DEAR3(2) ------->ANAC58             --------->ERF1 ------->ANAC46             --------->MYB46(3)          --------->HSFB2a(2) -->ANAC46                  <------NtERF2  *TSS       --------->HSFB2a(2) -->ANAC58                  <---------ABI4(2)--------->MYB59--------->GLK1(2)          --------->ARR14(2) >GAMYB  --------->YAB1    --------->At4g35610        <---------HSFB2a(2)  <---------DEAR3(1)  ------ -->RAP2.6(2)              <---------At4g35610    <----------DOF2        --------->CCA1(2)     <----- -->ANAC58                 <---------RAP2.3(1)<------MYB83 <---------GLK1(2) --------->At5g28300    - ->MYB46(3)                <---------ATERF1(1)<------MYB46(1)         ----------->ARR10<---------ARR14(2)   aacgcaacgaatcagcatttggattttggagccgccgcgaaactggttcggtctttctcgagaatctcagagaagagacggtgagagtggatttgggccg  9694900                                                                    ----------->GT1                                                                <---------SPL7                                                               <---------ANAC46                                                             <-----------HVH21                                                            <---------bZIP60(1)                                                            --------->TGA1a                                                            <---------O2                 -------->P                                 --------->bZIP60(1)               <---------SPL7------------>CBF               <---------TGA1a <---------AHL20(2)        <---------CCA1(2)             --------->DEAR3(1) --------->AHL20(2)   ------>NtERF2                      ----------->HVH21 <---------AHL20(1)  --------->LBD16                    --------->MYB46(3)               --------->At4g35610 --------->AHL20(1) --------->ANAC46                    --------->DEAR3(2)    --------->TOE2(3) ----->GT1    <---------ANAC58               ----------->GT1--------->O2     ----------->RAV1(2) ----ANAC46   <---------ANAC58    ----------->GT1 ---------->DOF2 <---------TOE1(2)  --------->TOE2(3) -------->AHL20(2) <---------LBD16--------->YAB1  ====================bZIP_DOF--------->TOE1(3)    <<   tattaaattaagttgggcttacccggcccatatcaatagttataagcccgtttaaagaaccgacgtcgtatggtcaaaaacctgaaacattagcttcctt  9695000                    ------>NtERF2                   --------->DREB2C(2)                   --------->DEAR3(1)                   --------->RAP2.3(2)                   --------->RRTF1(3)                   --------->RAP2.3(3)                  --------->ATERF1(1)                                                         -------                  --------->ORA47(2)                                                  <---------ARR11(3)                  --------->RAP2.3(1)                                                 --------->ARR11(3)                  <------NtERF2                                                   ---------->DOF2                 <---------ATERF1(1)                                             <------ZmHOX2a(1)                ------->GAMYB                                                   --------->ANAC58           *TSS--------->MYB46(3)          <<<<<<<<<CBP60g                      --------->ANAC58      <---------ALFIN1                     <<<<<<<<<SARD1                     <-----------RAV1(2)     ------>ZmHOX2a(1)               <---------ARR14(2)     <---------YAB1   --------->At4g35610  --- <<<<<<<TBF1---------->DOF2          --------->ARR14(2)  <----------DOF2   <------ZmHOX2a(1)  <------   cttcttcctcaccttcaagcgccgacttcgttttcttcgaatccaaatttctgtgtctgcttttgattcacagagaaggagcaggaaagatgttggatat  9695100                                                            <---------ARR14(2)                                                            --------->ARR14(2)                                                          ----------->ARR10                                                         <------NtERF2                                                       <---------ANAC46                                                       --------->DEAR3(1)          --------->REM1(2)   --------->LBD16         <---------LBD16       <---------ANAC58     <---------LBD16          ------->GAMYB                              -----       <---------ANAC46   --------->GLK1(2)         --------->DEAR3(1)                          <----       <---------ANAC55(2)<---------ARR14(2)   --------->ANAC58                          --------->ICU4       <---------ANAC58 --------->MYB46(3)     --------->ANAC58     <------NtERF2        <------ZmHOX2a(2) -->GLK1(1)        ----------->GT1           --------->GLK1(2)     ------>NtERF2         <---------YAB1 ------>WOX13(1)  --------->DAG2            <---------GLK1(2)--------->CCA1(2)          <---------ARR11(3) ---GLK1(1)     ---------->DOF2          --------->LBD16--------->LBD16                 --------->ARR11(3)   caatctatttcgtgaagagaaaggtaacaatccggagattatccgagaatcgcaacgccggagatttgccagcgttgaaatcgtcgatgagatcattaag  9695200                 <---------At4g35610                 <------NtERF2              <------NtERF2              --------->TGA2(2)              --------->ATERF1(1)             <-----------TGA1             <-----------HVH21            <---------ANAC58            --------->bZIP60(1)            <---------bZIP60(1)            <---------ANAC58            <---------ANAC46            --------->TGA2(1)    <---------WOX13(1)    --------->ANAC58     --------->ARR14(2)                ------->TEIL    --------->ANAC58     <---------ARR14(2)           <-----------GT1 ---->At4g35610  --------->At4g35610  ------>ZmHOX2a(2)<---------TOE2(3)       --------->YAB1 -----At4g35610<---------WRKY12--------->ATHB12   <----------DOF2   <----------DOF2             <----   ctggacaaggaatggcgtcagcgtaagtatccacgattgatccatttgctctcttttaacgaattttgagctttgatgctatcaaaatttgttgtgtttc  9695300  Previous    Next  AGI:  At5g27460.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G02150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61647.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9693265    to: 9694843    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27470.1    Description:  seryl-tRNA synthetase / serine--tRNA ligase. Identical to Seryl-tRNA synthetase [Arabidopsis Thaliana] (GB:Q39230); similar to AtSRS (OVULE ABORTION 7), serine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G11870.2); similar to AtSRS (OVULE ABORTION 7), serine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G11870.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77028.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17631.1); similar to Seryl-tRNA synthetase (Seryl-tRNA(Ser/Sec) synthetase) (Serine--tRNA ligase) (SerRS) (GB:O81983); contains InterPro domain Aminoacyl-tRNA synthetase, class II (G, H, P and S); (InterPro:IPR Range:  from: 9695011    to: 9697392    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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