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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ICU4
--------->
AHL20(2)
<---------
ARR11(3)
<---------
YAB1
<---------
AHL20(2)
--------->
ARR11(3)
<---------
ICU4
--------->
AHL20(2)
------->
TEIL
<---------
AHL20(2)
<---------
ATHB12
--------->
AHL20(2)
----------->
GT1
--------->
AHL20(2)
--------->
ICU4
<---------
AHL20(2)
------>
ZmHOX2a(1)
<---------
AHL20(1)
----------->
GT1
<------
--------->
AHL20(2)
--------->
TOE2(3)
--------->
YAB1
---------->
DOF2
--------
<---------
AHL20(2)
----------------->
AG
<---------
AHL20(2)
--------->
YAB1
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
<---------
CCA1(2)
--------->
YAB1
<---------
TOE2(3)
ttcatatatatatatatatatatatatatatcctaaaatgtatatctctaataaaattagaagaaatgataccaaaaataaaggtgaaatcatgataaaa
9553000
<---
<----
<-------
<---------
AHL20(2)
--------->
ANAC46
--------->
ARR11(3)
<---------
ANAC46
<---------
ICU4
<---------
ANAC58
<---------
ARR11(3)
<---------
YAB1
<---------
REM1(2)
--------->
AHL20(1)
<----------
DOF2
<---------
ANAC58
<---------
AHL20(2)
<---------
DAG2
--------->
AHL20(2)
<---------
AHL20(1)
---------->
ID1
<---------
TOE2(3)
<---------
ICU4
--------->
YAB1
---
AHL20(2)
--------->
ATHB12
<---------
DOF5.7(2)
--------->
AHL20(2)
--------->
AHL20(2)
->
AHL20(2)
<-------
TEIL
--------->
DOF5.7(2)
<---------
AHL20(2)
<-------
TEIL
<---------
AHL20(1)
ttttgtttttttttgttttggttcattgagtttgccattaacgctttttttttataaataatttcgtctacacaaattcatccatataatattttctttt
9553100
-------
-------
--------->
AHL20(2)
<---------
HSFC1(2)
--------
--------->
HSFB2a(1)
<-------
<---------
TOE2(3)
--------->
HSFC1(2)
--------->
MYB52(1)
<---------
At4g35610
--------->
MYB59
--------->
DAG2
<---------
HSFB2a(1)
------------
------
At5g28300
<---------
TOE1(3)
---------->
DOF2
----------->
GT1
--------->
AHL20(2)
-------
GT1
------->
TEIL
------->
TEIL
--------->
At4g35610
<---------
AHL20(2)
---
DOF2
<-----------
GT1
<---------
YAB1
<---------
At4g35610
--------->
AHL20(2)
actgcatcagagtttcactatgtatttaggttttttatgaattttaaaaaagttcagcatcaaggtgaagaaaattccaaaaaaataaataaaacggtga
9553200
--------->
ZAT14
<---------
ZAT14
<---------
YAB1
--------->
YAB1
---->
HVH21
<---------
ICU4
-->
WRKY38(1)
<---------
ATHB12
<-----------
RAV1(2)
->
At5g28300
>>>>>>>>>
GATA-1
<---------
ZAT18
----
HVH21
--------->
DAG2
----------->
GT1
--------->
TOE2(3)
<-----------
GT1
>
MYB.PH3(1)
---------->
ID1
---------->
DOF2
--------->
AHL20(2)
------->
TEIL
<---------
MYB52(1)
cccaaaaaaaacttgttgtcttcaaaaccaaaagtactcgacaaatcaaatagataaatcatgaatcttagtacagtcaggttttatcgtctacgataag
9553300
------>
ZmHOX2a(2)
--------->
GLK1(1)
<---------
GLK1(1)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
AGP1
--------->
ARR14(2)
<---------
AGP1
--------->
TOE2(3)
<---------
At4g35610
--------->
MYB52(1)
--------->
MYB52(1)
<---------
ZAT14
<----------
DOF2
----------->
TBP
----------
--------->
ZAT14
--------->
TOE1(3)
--------->
AHL20(2)
--------->
ANAC46
--------->
ANAC46
----------->
GT1
--------->
MYB46(3)
<----------
DOF2
-------
--------->
ZAT6
<---------
CCA1(2)
--------->
AHL20(2)
--------->
ANAC46
--------->
ANAC46
ttccacaataaatccaaacactaaactgttcagatctcagatagtaactttaaatcaacggctataaattcgccatttgtactttcatttacacaacaga
9553400
<---------
HSFB2a(1)
--------->
HSFB2a(1)
*
TSS
<---------
HSFC1(2)
<-----------
GT1
--------->
HSFC1(2)
--
--------->
YAB1
--------->
ANAC46
<---------
GLK1(2)
===
->
RAV1(1)
--------->
ANAC46
--------->
YAB1
================================================
>
GAMYB
<-------
TEIL
------>
ZmHOX2a(1)
--------------->
AGL15
<--
gaataatacatacactctatctctctcctattcgtaactt
atatttctctctctactgtgtttagaaattggaatcttctctcttctctatctccctctc
9553500
--------->
ANAC58
--------->
O2
--------->
ANAC58
<---------
TGA1a
--------->
TGA1a
<---------
O2
--------->
ANAC46
--------->
ANAC55(2)
<----------
DOF2
--------->
ANAC55(1)
<---------
DAG2
<---------
ALFIN1
<-----------
GT1
<---------
REM1(2)
<---------
MYB52(1)
<---------
SPL7
------>
ZmHOX2a(1)
---------->
ID1
--------------->
AtSPL3
<---------
HSFC1(2)
--------->
LBD16
--------->
DAG2
----------->
GT1
--------->
TOE2(3)
<-----------
GT1
---------->
DOF2
--------->
HSFB2a(2)
<---------
ANAC58
----------->
GT1
========================
bZIP_DOF
--------->
HSFC1(2)
--------->
ANAC58
------------->
AGL15
<---------
HSFB2a(2)
<---------
ANAC58
--------->
ANAC58
==========================================
MADS_MADS
<---------
ANAC46
<---------
ANAC55(2)
===============
MADS_MADS
<---------------
AGL15
<---------
HSFB2a(1)
--------->
ANAC55(2)
----
---------------
AGL3
--------------->
AGL15
--------->
HSFB2a(1)
<---------
LBD16
<----------
tcttaaaaagggaccgtacacgtctctctctatttccagtaaaaaatcgaaatttcgtataatttcctcagtcccgtaattttctccttttttttcttcc
9553600
<---------
HSFB2a(1)
--------->
ZAT2
<---------
TOE2(2)
<---------
At4g35610
<---------
TOE1(2)
--------->
At4g35610
--------->
TOE1(1)
--------->
GLK1(2)
--------->
HSFB2a(1)
<---------
ANAC58
<-----------
ARR10
--------->
HSFC1(2)
<---------
ANAC58
<---------
GLK1(2)
<---------
HSFC1(2)
<---------
MYB52(1)
>>>>>>>>>
TBF1
<-----------
RAV1(2)
----->
LBD16
<---------
ARR14(2)
------>
ZmHOX2a(1)
>>>>>>>>>
TBF1
<----------
DOF2
-
GT1
--------->
ARR14(2)
<---------
ANAC46
>>>>>>>>>
TBF1
<-----------
GT1
--------->
HSFB2a(2)
ccaattccttcaattttcgaattcgcctctctgtttcgttcctcgtagacgaagaagaagaagaatctcaggttttagctttcgaagcttccaaaatttt
9553700
<---
<----
-----
<----
--------->
ARR14(2)
--------->
AGP1
--------->
ARR11(3)
--------->
At4g35610
<----------
DOF2
<---------
HSFB2a(2)
<---------
At4g35610
<----------
DOF2
<---------
CCA1(1)
--------->
ANAC58
--------->
MYB46(3)
--------->
HSFB2a(2)
<---------
RVE1(1)
--------->
ANAC58
<------
ZmHOX2a(2)
----------->
RAV1(2)
--------->
ARR11(3)
--------->
DAG2
<---------
ARR14(2)
------>
ZmHOX2a(2)
<---------
ARR11(3)
---------->
DOF2
--------->
At4g35610
<---------
ARR11(3)
<---------
ARR14(2)
<---------
TOE1(3)
----------->
ARR10
--------->
ARR11(3)
--------->
WOX13(1)
<---------
TOE2(3)
<---------
TOE2(3)
<------
ZmHOX2a(2)
gaattttgatcttctgggctcttttgtaaatcagactgaagatatttagattacccagaagttgttcaag
gtaaagcaattcagatcagatccaccaatt
9553800
<---------
CCA1(1)
<---------
MYB46(3)
<-------
GAMYB
--------->
MYB52(2)
<-----------
RAV1(1)
------>
MYB46(1)
<---------
MYB46(3)
<---------
MYB59
------
AHL20(2)
<---------
ANAC46
<---------
GLK1(1)
<---------
ETT(1)
-----
AHL20(2)
<-------
GAMYB
<---------
RVE1(1)
<---------
TOE2(3)
---->
AHL20(2)
--------->
MYB52(2)
<---------
ARR11(3)
---------->
DOF2
-----
AHL20(1)
<---------
MYB46(3)
--------->
ARR11(3)
<---------
YAB1
------>
MYB83
ttttttttttttttcatttgaagtttttgtgtttgttgtttgttgttgggagatatttgaaatctgggttattaaagttccgacctaatttcatattgtg
9553900
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AGI:
At5g27150.1
Description:
NHX1 (NA+/H+ EXCHANGER); sodium ion transmembrane transporter/ sodium:hydrogen antiporter. Identical to Sodium/hydrogen exchanger 1 (NHX1) [Arabidopsis Thaliana] (GB:Q68KI4;GB:O04655;GB:Q8LRL1;GB:Q9ZPK3); similar to NHX2 (sodium proton exchanger 2), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT3G05030.1); similar to sodium proton exchanger [Thellungiella halophila] (GB:ABF48496.1); similar to Na+/H+ antiporter [Thellungiella halophila] (GB:ABJ97691.1); similar to Na+/H+ vacuolar antiporter [Brassica napus] (GB:AAO38856.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153); contains InterPro domain Sodium/h
Range:
from: 9553441
to: 9557516
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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