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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                            <---------YAB1
                                                 <------ZmHOX2a(2)
                                                 --------->CCA1(2)
                                                --------->ARR14(2)
                                                <---------ARR14(2)
                                                <---------ARR11(3)
                                                --------->ARR11(3)
                                                --------->AGP1    <---------ZAT6
                                            ---------->DOF2 <---------------AGL15
                                  --------->ANAC46         <-----------------AGL1 <---------ZAT14
--ANAC55(2)                       --------->bZIP60(2)   <----------DOF2  ---------->DOF2  --------->YAB1
 
aatgactacatatacaaaaaaaacatagagacataacacatcacacaaaaagatccaaactttacaatagtggaaacaaagagagagtagtaatagtaac  9315100
                --------->TOE2(3)
               --------->ATHB12
              <-------TEIL                           --------->GLK1(2) --------->YAB1            <--
           --------->ZAT2                       --------->MYB46(3)     --------->TOE2(3)         <--
           --------->At4g35610         <---------ARR14(2)              ------->GAMYB   --------->ZAT14
   <---------bZIP60(1)                 --------->ARR14(2)             --------->MYB46(3)    --------
   --------->bZIP60(1)<---------ZAT18  <---------ARR11(3)  <-----------HVH21 --------->YAB1<--------
 
ctagtgacttcaccagcttcattagtgagcatttcagtcccagttcttccaacaacaatctgtgtcacattcaaccacaattacaaaaactatactcatt  9315200
                                  <---------ARR14(2)
<---------WOX13(1)               <------ZmHOX2a(1)
-------YAB1              <---------MYB52(2)                              <---------ETT(1)
-------TOE2(3)           --------->ANAC58                             <-----------GT1   <---------HSFB2a(2)
->ATHB12                 --------->ANAC58         <---------YAB1    <----------DOF2     --------->HSFB2a(2)
-YAB1  ---------->DOF2--------->ZAT18 ----------->GT1          ------->GAMYB --------->AtMYB61
 
gagattgatacaaaggagaagaaggggcacgaacgaggaattggtaaatgctcatgctagcatcaacagcgattttccgaccaaaatagctctcgaattt  9315300
                                       --------->TOE2(3)
                                      ----------->GT1
                                  <---------HSFC1(2)
                                  --------->HSFC1(2)
                           <------NtERF2
                           --------->At4g35610
                           <---------At4g35610
                         <---------RAP2.6(2)                --------->AtMYB61
                         --------->ETT(1)               <---------ETT(1)
                         <---------DEAR3(1)          <---------ARR14(2)       --------->TOE2(3)
                        --------->RAP2.6(3)          --------->ARR14(2) --------->ANAC46
                       <-----------HVH21      --------->TOE2(3)       --------->ANAC58            --
                    <----------DOF2  <-------TEIL    --------->GLK1(2)--------->ANAC46        <-----
  <----------DOF2 <-------TEIL ---------->DOF2--------->TOE1(3)       --------->ANAC58     <--------
 
ctgttctttcatacaactaggcgcattgtcggctaaaagcttcgttaaaccctaaaaatccgaccaaaaacacacacaaaacattagatcgaattcagga  9315400
                                                                      ---------->DOF2
                                                             --------->At5g28300
                                                            <---------DEAR3(2)
                                             --------->TOE2(3)--------->ARR14(2)
                                             --------->TOE1(3)<---------ARR14(2)
                                           <---------ARR11(3)<-------GAMYB
                                     <-----------GT1        <---------MYB46(3)
    --------->TOE2(3)          <---------MYB46(3)          <---------DEAR3(1)
------->YAB1                   --------->MYB52(2)          <---------RAP2.6(2)
-ZmHOX2a(1)                   <---------TOE1(2)            <---------ANAC46               --------->ALFIN1
-LBD16                       <---------MYB52(1)          ------------>AtMYB77*TSS      <---------AtMYB61
 
atcgtaatctaaaactgaaacgagaagtaatcgtttgtttgaaccagaccttaatacccatggcggttacagagaaagttagcgaatgcgaaggtgttgt  9315500
                                                                                   <---------ZAT18
                                                                                 <---------DEAR3(1)
                                                                              <-----------RAV1(1)
                                                                              --------->ALFIN1
                                                    <---------ICU4           <-------MYC2
                                                  ----------------------->TaNAC69(2)
                                                 --------->YAB1              ------->MYC2
                                                <---------YAB1               <-------MYC4
                                             <---------DEAR3(1)              ------->MYC4
                                           <---------ATERF1(1)              --------->ANAC55(2)
                                           ------>NtERF2                    <---------O2
                                          <---------ATERF1(2)               <---------TGA1a
                                          --------->DEAR3(1)                ========================
                                          <---------DEAR3(1)                ========================
                                         --------->ATERF1(1)                --------->TGA1a
                                       --------->ANAC58                     --------->O2
                                       --------->ANAC58                     <---------ANAC55(2)
                                       --------->ANAC46                   <------------OsbHLH66
                                       --------->O2--------->ICU4         <---------ALFIN1
                                       <---------O2<---------YAB1        <---------REM1(2)
                                       --------->TGA1a             ------>NtERF2 <---------RAP2.3(3)
                                     <---------ALFIN1             --------->DEAR3(1)
                             <------MYB83<---------LBD16          <---------ALFIN1 <---------PCF2
                            --------->MYB59--------->LBD16      <---------ATERF1(1)--------->ZAT18
                      ----------------->AG--------->ATERF1(2)   ------>NtERF2------->MYC3
                      ------------>CBF <---------TGA1a         --------->ANAC46 --------->ALFIN1
                  ===============================bZIP_DOF     <---------LBD16<-------MYC3          <
                  <----------DOF2   ------>ZmHOX2a(1)<------------CBF ------>ZmHOX2a(1)       <-----
              <---------ZAT18<------MYB46(1)<------NtERF2   <-----------GT1------------>OsbHLH66 <--
 
ctctctctctctctcagggaactttgccaatttggtctcctcacgccggcgatgataattgttttcccgcctcctcaacacgtgtgggcgctagagtctg  9315600
             <----------DOF2
  <---------DAG2
  <----------DOF2                                  --------->YAB1
=============bZIP_DOF ------>MYB83     <-------GAMYB
=============bZIP_DOF ------>MYB46(1) --------->MYB111(2)
-----------GT1      <---------MYB59   <---------MYB46(3)
----YAB1  ------>NtERF2              <--------P   <---------ATHB12       --------->YAB1
-------WOX13(1)  <-----------GT1 <-----------RAV1(2)        ---------->DOF2                 --------
 
attaactttatgaggcctttaaacctaatgagcccatcaggttgttaaggcccatcatatagttaaggcccatgagtcatagtccaaagaaatgttagtg  9315700
                                        --------------->AGL15
                                        <---------------AGL15
                     ------->TEIL       <----------DOF2----------->GT1
                   <-------TEIL         <---------DAG2--------->DAG2         --------->KAN4(1) -----
->MYB52(2)<----------DOF2            <-----------GT1 ---------->DOF2        <---------KAN4(2)  <----
 
gaatcgaaactctcttttaagatgcatcttatatgactatatactttttggagctataaagttataagttgagagagagaatgttcaatgtagcccatat  9315800
                                                              --------->ZAT14
                                                              <---------ZAT14
                                                        ------>MYB46(1)
                                                        -------->P
                                                  <-----------GT1               <---------ANAC58
                                              --------->AHL20(2)                <---------ANAC58
           ----------->GT1                    <---------AHL20(2)              <-----------RAV1(1)
---->AHL20(2)                                 <---------AHL20(1)   --------->ZAT14
-----AHL20(2)<---------MYB52(1)     <----------DOF2     ------>MYB83     <----------DOF2
 
aaatgttctgagtttcgttatatgtaagggtatgctattcttttggcattttatttccctaccaatacagtgatgtcttttttgctggagacaaatccat  9315900
               ------>ZmHOX2a(2)
              --------->At4g35610
              <---------At4g35610
             --------->ARR14(2)
             <---------ARR14(2)
             <---------AGP1
       --------->ARR14(2)
       <---------ARR14(2)
    ------>ZmHOX2a(2)
   --------->CCA1(2)
   --------->ARR14(1)
   <------ZmHOX2a(2)
  --------->ARR14(2)
  <---------ARR11(3)
  --------->ARR11(3)                                                                         -------
  --------->AGP1----------->HVH21                                  ---------->DOF2         <--------
  <---------ARR14(2)                                          <--------P              <---------GLK1(1)
----------->ARR10                                 ----------->RAV1(2)                 --------->GLK1(1)
 
tctaagatccgatttggatctgaagccttcaaaaaacatatagttctcatcaaacctgactatgggttgataaagaaattcgaaatcagatttcagcaat  9316000
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AGI:  At5g26680.1   
Description:  endonuclease, putative. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29630.2); similar to putative flap endonuclease 1 [Oryza sativa (japonica cultivar-group)] (GB:AAV59413.1); similar to Os05g0540100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056179.1); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain 5'-3' exonuclease; (InterPro:IPR002421); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084)
Range:  from: 9311885    to: 9315478    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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