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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                               <----
                                                                                             <------
                                                                                             <------
                                                <---------ALFIN1                           <--------
   --------->CCA1(2)                         --------->AtMYB61                         --------->MYB46(3)
  --------->ARR11(3)                       --------->ARR11(3)                         --------->ANAC58
  <---------ARR11(3)---------->DOF2    ---------->DOF2         <---------HSFC1(2)     --------->ANAC58
----TEIL---------->DOF2   <------ZmHOX2a(1)<---------ARR11(3)  --------->HSFC1(2)   <------ZmHOX2a(1)
 
acagagatatgaaaagcctaaaaaaaagaggaagtgtttagaaaaagacctccaccagcatcaagaagcatcttcaacatagaacgaggacccaatgttg  9258600
              --------->MYB46(3)
            ----------->RAV1(1)                                      --------->YAB1
     <---------GLK1(1)                    ===================HOX2a_HOX2a
     <---------bZIP60(1)                  ------>ZmHOX2a(2)        --------->ANAC46
     --------->bZIP60(1)----------->RAV1(1)                        --------->ANAC58
   --------->YAB1     --------->SPL7     --------->At4g35610       --------->ANAC58
-----SPL7--------->ANAC46               <---------ARR11(3)       --------->MYB46(3)
---------AtSPL8   --------------->AtSPL8--------->ARR11(3)  --------->ANAC58
---------AtSPL3------->GAMYB        --------->YAB1          --------->ANAC58                  ------
---RAV1(1)--------->At4g35610    --------->MYB52(1)   <------ZmHOX2a(1)          ---------->DOF2  <-
 
tacgaatgatatcagcaacagcctgtaccacaaaaacaacgatgatctgaaaccagaggagagaagcaacaagcatcacagagaaaaagagccatagaaa  9258700
                                                       --------->ANAC58
                                                       --------->ANAC58
                <---------ZAT2                       <-----------GT1
                --------->ZAT2  --------->YAB1      <-------TEIL
                <---------HSFB2a(1)                --------->CCA1(2)
                <---------HSFC1(2)     <---------MYB59 --------->ANAC46
       <---------At5g28300     --------->ICU4     <---------ARR14(2)
      <-----------GT1          <---------YAB1     <---------GLK1(2)
  <---------AHL20(2)         --------->YAB1    <---------HSFB2a(2)------->TEIL
 --------->AHL20(2)       <-----------GT1      --------->HSFB2a(2)--------->ARR14(2)
---->DOF2--------------------->WRI1    --------->TOE2(3) --------------------->WRI1         --------
-----ZmHOX2a(1) --------->HSFC1(2)   ------->TEIL --------->ARR14(2)                   ---------->DOF2
 
aggattaatttaccttggaagcttggatattaccatgatgaaccttacttccagattcacgcttcaacgaatcgcctaaaccattttcacaaaaggagtt  9258800
                                               <------ZmHOX2a(1)
                                          <---------HSFB2a(2)
                                         =============HOX2a_HOX2a
                                         ------>ZmHOX2a(2)
                                        ==============HOX2a_HOX2a
                                        <------ZmHOX2a(2)                                    <------
                                        --------->CCA1(2)                                 --------->ARR14(2)
                                       --------->AGP1                                     <---------ARR14(2)
                                       --------->ARR11(3)                             <-------TEIL
                                       <---------AGP1                              <---------ANAC58
                                       <---------ARR14(2)--------->ARR11(3)        <---------ANAC58
                                       --------->ARR14(2)<---------ARR11(3)        <---------ANAC46
                                       <---------ARR11(3)<---------ARR14(2)       <---------MYB46(3)
                                      <---------GLK1(1)  --------->ARR14(2)       --------->ABI4(2)
                                     ----------->ARR10 ----------->ARR10          <-------TEIL
                               <------ZmHOX2a(1)      <---------------------WRI1 --------->ALFIN1
                               ================HOX2a_HOX2a                  --------->MYB52(1)     -
--->GT1                        =================HOX2a_HOX2a       --------->YAB1<---------MYB52(1)<-
 
aatctcgttaccaaaaaactaatatcgatttagaggaaatgagatctggaggaagatggagatactcactcagaacgagtaccggtgcgtgcatatttgc  9258900
                                                                           ------>ZmHOX2a(1)
                                                                         ===========================
                                                                        ============================
                                                                        <------ZmHOX2a(2)
                                                                       --------->ARR14(3)
                                                                       <---------ARR14(3)
                                                                       --------->ARR11(3)
                                                                       <---------ARR11(3)
                                                                       --------->ARR14(2)
                                        <---------ANAC46               <---------ARR14(2)
               <---------ZAT14       --------->ANAC58                 --------->HSFB2a(1)
  <---------TOE1(3)     --------->HSFC1(2)                       --------->ALFIN1
  <---------TOE2(3)     <---------HSFC1(2)                  <------NtERF2------>ZmHOX2a(2)
-----GT1  <---------At5g28300        --------->ANAC46    --------->At4g35610                  <-----
----->ZmHOX2a(2)   >>>>>>>>>TBF1     --------->ANAC58 ---------->DOF2 <---------HSFB2a(1)    *TSS
-----ZmHOX2a(2)--------->ZAT14   --------->CCA1(2)  ---------->DOF2  ----------->ARR10    --------->GLK1(1)
 
gatctgaggttttcacagtgaagaagaagcttagagagacacggcgagtgattttcaaagagcggcaagtggaagatcctactgccttctccgatttctt  9259000
            <----------DOF2
           <---------ANAC58
       <---------ANAC58                                                     <----------DOF2
       <---------ANAC58                                                     <---------DAG2
  ------>ZmHOX2a(1)   <---------TOE1(3)                             <------------CBF   <------ZmHOX2a(2)
=========HOX2a_HOX2a  <---------TOE2(3)                          <<<<<<<<<<<<<<<<<LFY <---------ARR11(3)
=========HOX2a_HOX2a  --------->MYB59              --------->AHL20(2)      <----------DOF2    ------
-----DOF2  <---------ANAC58               ---------->DOF2      <-----------GT1        --------->ARR11(3)
 
tcatcctctctcgtgcttttcattttaggttgagaagcccatccctaaggcccattaactaatatttcacacattgggcctttttgtaagatcaaaacaa  9259100
                                    --------->ANAC55(2)
                          <------MYB83
                          ----------->GT1
                         --------->MYB46(2)
                         --------->MYB59
                 --------->LBD16    <---------ANAC55(1)
                --------->ANAC46    <---------ANAC55(2)
                --------->HSFB2a(2) <---------ANAC46                       <----------ID1
               <---------LBD16      <---------ANAC58          ------>MYB46(1)
             <---------ARR14(2)     <---------ANAC58          ------>MYB83----------->GT1
             --------->ARR14(2)--------->ICU4               --------------->AGL15
        --------->AHL20(2)<---------ANAC55(2)               --------->TOE2(3)
        <---------AHL20(2)<------MYB46(1)                   <---------MYB59----------->GT1
  --------->YAB1<---------HSFB2a(2)<-------TEIL            ----------------->AGL1
---->DOF2   <---------CCA1(2)---------->DOF2               ----------------->AG
 
agtaatagtatttttatatccggaagattaggtaaagatgcgtgagaacgggagaattgttaacctaatttgttaagagggaaaaaatacaaaaaatact  9259200
              ---------->ID1
        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <---------YAB1
       <---------AHL20(2)                                             <---------YAB1
       --------->AHL20(2)           --------->AHL20(2)            <---------AHL20(2)
   <---------YAB1                  --------->AHL20(2)            <---------ICU4                   --
 <---------AHL20(2)            <---------MYB52(1)            <---------AHL20(2)                   <-
 --------->AHL20(2)         <-------TEIL <-----------GT1  <---------TOE2(3)          <----------DOF2
--------->AHL20(2)<---------MYB52(1)<---------AHL20(2)  <---------AHL20(2)          --------->TOE2(3)
 
tcatttatttttaatttgtccgtttaatacatgcgttatttaatttacctgtttaatatttaagttaatttttatgtttattgaaaaccttttttttttt  9259300
                                       --------->ZAT6
                                   --------->DOF5.7(2)
                                  <-------GAMYB
                                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                              ------->GAMYB
                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                             xxxxxxxxxxxxxxxx>smallRNA(s)
                             xxxxxxxxxxxxxxxx>smallRNA(i)
                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                           --------->MYB52(1)
                           <---------DOF5.7(2)
                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                        <xxxxxxxxxxxxxxxxsmallRNA(s)
                      --------->LBD16<---------DOF5.7(2)
                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       ----
              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <---
              <xxxxxxxxxxxxxxxxsmallRNA(i)                  --------->ZAT6            <---------ICU4
             <xxxxxxxxxxxxxxxxsmallRNA(i)                 --------->MYB52(1)         <---------YAB1
            xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ICU4
          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(i)       <---------TOE2(3)
         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ANAC58        --------->TOE2(3)<----------
         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ANAC58----------->GT1   <---------AHL20(2)
------->AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)       --------->AHL20(2)
--------AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)  <-----------GT1  --------
 
tttaattttagcaaaatcagacatccgagttaacgggcgttaacagtggtaacgaaatcgctaactgtagttaaaacttaaccatataatgtttactatt  9259400
                          ------->TEIL
                       <---------YAB1
                     -------->HAHB4
                     --------->YAB1
                     <---------ICU4
                    --------->ICU4
                  <--------HAHB4
                  -------->HAHB4
                  <--------ATHB1
                  <---------ICU4
                  --------->ATHB51
                  --------->YAB1
                 <---------YAB1               ----------->GT1
<-----------GT1  <---------ATHB12             <---------MYB46(3)
----->AHL20(2)   --------->ICU4   <---------YAB1                                             -------
------AHL20(2)   <---------ATHB51<---------AHL20(2)                  <---------YAB1        ---------
-GT1             --------->AHL20(2)        <---------ANAC46        <---------ICU4         <---------YAB1
------->AGL15  --------->YAB1  <---------AHL20(2)  <---------YAB1  --------->YAB1       --------->YAB1
 
tatatacaatttgttttctaataattatgaacatattattttagtcgagtggttatgagagagattaccatcatcatcgattcaaaatcgattatcatct  9259500
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AGI:  At5g26360.1   
Description:  chaperonin, putative. similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G11830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64349.1); similar to hypothetical protein OsI_022471 [Oryza sativa (indica cultivar-group)] (GB:EAZ01239.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74796.1); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, gamma subunit; (InterPro:IPR012719); contains InterPro domain Chaperonin TCP-1, conserved site; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro d
Range:  from: 9255056    to: 9258994    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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