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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----
<------
<------
<---------
ALFIN1
<--------
--------->
CCA1(2)
--------->
AtMYB61
--------->
MYB46(3)
--------->
ARR11(3)
--------->
ARR11(3)
--------->
ANAC58
<---------
ARR11(3)
---------->
DOF2
---------->
DOF2
<---------
HSFC1(2)
--------->
ANAC58
----
TEIL
---------->
DOF2
<------
ZmHOX2a(1)
<---------
ARR11(3)
--------->
HSFC1(2)
<------
ZmHOX2a(1)
acagagatatgaaaagcctaaaaaaaagaggaagtgtttagaaaaagac
ctccaccagcatcaagaagcatcttcaacatagaacgaggacccaatgttg
9258600
--------->
MYB46(3)
----------->
RAV1(1)
--------->
YAB1
<---------
GLK1(1)
===================
HOX2a_HOX2a
<---------
bZIP60(1)
------>
ZmHOX2a(2)
--------->
ANAC46
--------->
bZIP60(1)
----------->
RAV1(1)
--------->
ANAC58
--------->
YAB1
--------->
SPL7
--------->
At4g35610
--------->
ANAC58
-----
SPL7
--------->
ANAC46
<---------
ARR11(3)
--------->
MYB46(3)
---------
AtSPL8
--------------->
AtSPL8
--------->
ARR11(3)
--------->
ANAC58
---------
AtSPL3
------->
GAMYB
--------->
YAB1
--------->
ANAC58
------
---
RAV1(1)
--------->
At4g35610
--------->
MYB52(1)
<------
ZmHOX2a(1)
---------->
DOF2
<-
tacgaatgatatcagcaacagc
ctgtaccacaaaaacaacgatgatctgaaaccagaggagagaagcaacaagcatcacagagaaaaagagccatagaaa
9258700
--------->
ANAC58
--------->
ANAC58
<---------
ZAT2
<-----------
GT1
--------->
ZAT2
--------->
YAB1
<-------
TEIL
<---------
HSFB2a(1)
--------->
CCA1(2)
<---------
HSFC1(2)
<---------
MYB59
--------->
ANAC46
<---------
At5g28300
--------->
ICU4
<---------
ARR14(2)
<-----------
GT1
<---------
YAB1
<---------
GLK1(2)
<---------
AHL20(2)
--------->
YAB1
<---------
HSFB2a(2)
------->
TEIL
--------->
AHL20(2)
<-----------
GT1
--------->
HSFB2a(2)
--------->
ARR14(2)
---->
DOF2
--------------------->
WRI1
--------->
TOE2(3)
--------------------->
WRI1
--------
-----
ZmHOX2a(1)
--------->
HSFC1(2)
------->
TEIL
--------->
ARR14(2)
---------->
DOF2
aggattaatttac
cttggaagcttggatattaccatgatgaaccttacttccagattcacgcttcaacgaatcgc
ctaaaccattttcacaaaaggagtt
9258800
<------
ZmHOX2a(1)
<---------
HSFB2a(2)
=============
HOX2a_HOX2a
------>
ZmHOX2a(2)
==============
HOX2a_HOX2a
<------
ZmHOX2a(2)
<------
--------->
CCA1(2)
--------->
ARR14(2)
--------->
AGP1
<---------
ARR14(2)
--------->
ARR11(3)
<-------
TEIL
<---------
AGP1
<---------
ANAC58
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ANAC58
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ANAC46
<---------
ARR11(3)
<---------
ARR14(2)
<---------
MYB46(3)
<---------
GLK1(1)
--------->
ARR14(2)
--------->
ABI4(2)
----------->
ARR10
----------->
ARR10
<-------
TEIL
<------
ZmHOX2a(1)
<---------------------
WRI1
--------->
ALFIN1
================
HOX2a_HOX2a
--------->
MYB52(1)
-
--->
GT1
=================
HOX2a_HOX2a
--------->
YAB1
<---------
MYB52(1)
<-
aatctcgttaccaaaaaactaatatcgatttagaggaaatgagatctggaggaagatggagatactcac
tcagaacgagtaccggtgcgtgcat
atttgc
9258900
------>
ZmHOX2a(1)
===========================
============================
<------
ZmHOX2a(2)
--------->
ARR14(3)
<---------
ARR14(3)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
ANAC46
<---------
ARR14(2)
<---------
ZAT14
--------->
ANAC58
--------->
HSFB2a(1)
<---------
TOE1(3)
--------->
HSFC1(2)
--------->
ALFIN1
<---------
TOE2(3)
<---------
HSFC1(2)
<------
NtERF2
------>
ZmHOX2a(2)
-----
GT1
<---------
At5g28300
--------->
ANAC46
--------->
At4g35610
<-----
----->
ZmHOX2a(2)
>>>>>>>>>
TBF1
--------->
ANAC58
---------->
DOF2
<---------
HSFB2a(1)
*
TSS
-----
ZmHOX2a(2)
--------->
ZAT14
--------->
CCA1(2)
---------->
DOF2
----------->
ARR10
--------->
GLK1(1)
gatctgaggttttcacagtgaagaagaagcttagagagacacggcgagtgattttcaaagagcggcaagtggaagatcctactgccttctccga
tttctt
9259000
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
<----------
DOF2
<---------
ANAC58
<---------
DAG2
------>
ZmHOX2a(1)
<---------
TOE1(3)
<------------
CBF
<------
ZmHOX2a(2)
=========
HOX2a_HOX2a
<---------
TOE2(3)
<<<<<<<<<<<<<<<<<
LFY
<---------
ARR11(3)
=========
HOX2a_HOX2a
--------->
MYB59
--------->
AHL20(2)
<----------
DOF2
------
-----
DOF2
<---------
ANAC58
---------->
DOF2
<-----------
GT1
--------->
ARR11(3)
tcatcctctctcgtgcttttcattttaggttgagaagcccatccctaaggcccattaactaatatttcacacattgggcctttttgtaagatcaaaacaa
9259100
--------->
ANAC55(2)
<------
MYB83
----------->
GT1
--------->
MYB46(2)
--------->
MYB59
--------->
LBD16
<---------
ANAC55(1)
--------->
ANAC46
<---------
ANAC55(2)
--------->
HSFB2a(2)
<---------
ANAC46
<----------
ID1
<---------
LBD16
<---------
ANAC58
------>
MYB46(1)
<---------
ARR14(2)
<---------
ANAC58
------>
MYB83
----------->
GT1
--------->
ARR14(2)
--------->
ICU4
--------------->
AGL15
--------->
AHL20(2)
<---------
ANAC55(2)
--------->
TOE2(3)
<---------
AHL20(2)
<------
MYB46(1)
<---------
MYB59
----------->
GT1
--------->
YAB1
<---------
HSFB2a(2)
<-------
TEIL
----------------->
AGL1
---->
DOF2
<---------
CCA1(2)
---------->
DOF2
----------------->
AG
agtaatagtatttttatatccggaagattaggtaaagatgcgtgagaacgggagaattgttaacctaatttgttaagagggaaaaaatacaaaaaatact
9259200
---------->
ID1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
YAB1
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
<---------
ICU4
--
<---------
AHL20(2)
<---------
MYB52(1)
<---------
AHL20(2)
<-
--------->
AHL20(2)
<-------
TEIL
<-----------
GT1
<---------
TOE2(3)
<----------
DOF2
--------->
AHL20(2)
<---------
MYB52(1)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
TOE2(3)
tcatttatttttaatttgtccgtttaatacatgcgttatttaatttacctgtttaatatttaagttaatttttatgtttattgaaaaccttttttttttt
9259300
--------->
ZAT6
--------->
DOF5.7(2)
<-------
GAMYB
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
------->
GAMYB
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
MYB52(1)
<---------
DOF5.7(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
LBD16
<---------
DOF5.7(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
----
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ZAT6
<---------
ICU4
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
MYB52(1)
<---------
YAB1
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ICU4
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
TOE2(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ANAC58
--------->
TOE2(3)
<----------
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ANAC58
----------->
GT1
<---------
AHL20(2)
------->
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
AHL20(2)
--------
AHL20(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<-----------
GT1
--------
tttaattttagcaaaatcagacatccgagttaacgggcgttaacagtggtaacgaaatcgctaactgtagttaaaacttaaccatataatgtttactatt
9259400
------->
TEIL
<---------
YAB1
-------->
HAHB4
--------->
YAB1
<---------
ICU4
--------->
ICU4
<--------
HAHB4
-------->
HAHB4
<--------
ATHB1
<---------
ICU4
--------->
ATHB51
--------->
YAB1
<---------
YAB1
----------->
GT1
<-----------
GT1
<---------
ATHB12
<---------
MYB46(3)
----->
AHL20(2)
--------->
ICU4
<---------
YAB1
-------
------
AHL20(2)
<---------
ATHB51
<---------
AHL20(2)
<---------
YAB1
---------
-
GT1
--------->
AHL20(2)
<---------
ANAC46
<---------
ICU4
<---------
YAB1
------->
AGL15
--------->
YAB1
<---------
AHL20(2)
<---------
YAB1
--------->
YAB1
--------->
YAB1
tatatacaatttgttttctaataattatgaacatattattttagtcgagtggttatgagagagattaccatcatcatcgattcaaaatcgattatcatct
9259500
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AGI:
At5g26360.1
Description:
chaperonin, putative. similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G11830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64349.1); similar to hypothetical protein OsI_022471 [Oryza sativa (indica cultivar-group)] (GB:EAZ01239.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74796.1); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, gamma subunit; (InterPro:IPR012719); contains InterPro domain Chaperonin TCP-1, conserved site; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro d
Range:
from: 9255056
to: 9258994
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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