Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   <-                                                                                                  <--                                                           --------->TOE2(3)             --------->MYB46(3)                                                 --------->YAB1             --------->TOE2(3)    ----                                           --------->YAB1 ----------->GT1<---------CCA1(2)    -------                    ----------->GT1       --------->AHL20(2)<---------MYB52(1) ---------->DOF2-------   cagattaaaacagagcaaaacatagaaaaattcaaaaaacacaaataaaaatcaaaactttcgttaattcaaatcaaatctcaaaggaacaacaacactc  9160000                                       --------->ANAC46                                       --------->ANAC58                                       --------->ANAC58                                    <---------ZAT18        ---------->DOF2           --------->At4g35610    ============================HOX2a_HOX2a    ----------->GT1    <------ZmHOX2a(2)             --------->ZAT14 -------->LBD16                --------->At4g35610                                --------->MYB52(1) --------LBD16           ------>ZmHOX2a(1)   --------->DAG2                 ----------->HVH21 -------LBD16            --------->LBD16 --------->ANAC46                 --------->LBD16 ----->MYB52(1)        ----------->RAV1(2) ---------->DOF2                <---------At4g35610    ---- -->ANAC58    ----------->GT1 <---------ARR11(3)                        <---------LBD16       ------- -->ANAC58   ----------->GT1  --------->ARR11(3)     --------->TOE2(3)<-----------GT1      ----------   accgggatcacaaagtcggaaaaactcctgaacatctgcacacacaaaagggtaatctcaaaattcagtttttttccggtgacaaaactgagatagtaat  9160100                                                   --------->AGP1                                                  <---------ZAT2                                                  <---------At4g35610                                                  --------->At4g35610                                           --------->YAB1                                           <                                          <---------ATHB12                                        <--     ----------->GT1                 --------->TOE2(3)       --------->TOE2(3)                   <---   ---------->DOF2              ---------->DOF2   --------->ZAT2                            <-------- ----->YAB1                 <---------MYB46(3)   ------>NtERF2                              --------- -->YAB1                    ----------->GT1<---------ICU4    --------->TOE1(3)              <-------- ->GT1               <-----------GT1 --------->TOE1(3)  --------->ANAC46    <---------ALFIN1<--------   aagaagaaagaaaaaacaaattgttaccagtggttaaagccttaatcatgccagctctacgacccttaaaatccctaaacacctcttcaacagtgcgtgg  9160200           <-------PIF5           ------->PIF5          <---------ZAT2          <---------At4g35610          ----------->RAV1(2)       --------->ATERF1(1)       <------NtERF2       --------->DEAR4(2)      <-----------HVH21      <---------ATERF1(1)      ------>NtERF2     --------->ANAC58     --------->ANAC58     --------->ANAC46                                                                               <   --------->ANAC46                                                                             <---- ---------SPL7                                                                                 ------ -------------AtSPL8                    --------->ZAT2                                         ------ ------ANAC46                       --------->MYB52(1) --------->ANAC58                  --------->ANAC58 -ANAC58 ------>NtERF2<----------DOF2   --------->At4g35610                              --------->ANAC58 -------------->TaNAC69(2)        --------->MYB46(3)   --------->ANAC58                  --------->ANAC55(2) -ANAC46--------->DEAR3(1)   <---------HSFB2a(2)  <----------ID1                     --------->CCA1(2) -ANAC58<---------ALFIN1     --------->HSFB2a(2) <------ZmHOX2a(1)---------->DOF2   <----------ID1 <-   attgtacgcgccacctgcttccatctttcttacagaacaaacagcttcgaaggagacaagacaagagtgaaagagagagagagagagagacaagtatttg  9160300            --------->ARR14(2)                              --------->ANAC58    <------NtERF2                                          --------->PCF5    <----------CDC5                                        <---------ARR14(2)   ------>NtERF2                                           --------->ARR14(2)   --------->At4g35610                                    ------>NtERF2   <---------At4g35610                                    --------->ATERF1(1)         *TSS  <---------DEAR3(1)                                      <------NtERF2           <---------AHL20(2) --------->RAP2.3(1)                                      <---------TCP16(2)     --------->AHL20(2) ---------ATERF1(1)                                --------->DAG2          <---------At4g35610 -----WRKY18(1)        <---------ANAC58   ---------->DOF2<---------SPL7    <---------LBD16 --->WRKY12 --------->GLK1(2)---------->DOF2  <----------ID1--------->ANAC58   --------->ARR14(2) ----->HVH21<---------ARR14(2)   ---------->DOF2  ---------->DOF2       ---------->DOF2       <------ZmHOX2a(1) --------DEAR3(1)      <---------ANAC58 ----------->HVH21<---------ATERF1(1)   <---------ARR14(2)<---   accggcgctgagagaatttgggtttgcgagagaaagaaagatgtgaaagagaaaaagggcggacccaaaaacaattaagcggatttaataagatgaggag  9160400                                                                         --------->GLK1(1)                                                                        --------->ARR14(2)                                                                        <---------ARR11(1)                                                                        <---------ARR14(2)                                                                        ------->TEIL                                                                        <-----------ARR10                                                                       <---------CCA1(2)                                                                     --------->ANAC55(2)                                                                     <---------ANAC55(2)                                                                   <---------ANAC46                                                              ------>ZmHOX2a(2)                                                              =======================HOX2a_HOX2a                                                             <------ZmHOX2a(2)                                                             ========================HOX2a_HOX2a            --------->GLK1(2)                               <---------ARR14(2)                -------            ------->TEIL                                    --------->ARR14(2)          <---------MYB46(3)   --------->LBD16                                          <---------ARR11(3)        <-------GAMYB   <------NtERF2                                            --------->ARR11(3)       <-----------RAV1(1)  --------->ANAC58              --------->ANAC58            --------->AGP1    ------>ZmHOX2a(1)  --------->ANAC58              --------->ANAC58            <---------AGP1  =====================RAV <---------LBD16             --------->ZAT18          ===============HOX2a_HOX2a --------->GLK1(1) <---------ZAT18         <------ZmHOX2a(1)            ==============HOX2a_HOX2a  <---------GLK1(1) --------->ZAT18      <------ZmHOX2a(1)               ------>ZmHOX2a(1)<---------ARR14(1)    <------- ---ZmHOX2a(1)  --------->At4g35610       <-----------GT1  <---------CCA1(2)----------->RAV1(2)   gagtccgcaaaatgaatctgatgaggaggagagcacgataagttttatctttcatcctcttagatcttgacgcgtatctcctgatttctgttgttgtatc  9160500                                                                                            ---------                                                                                        --------->AHL20(1)                                                                                        <---------AHL20(1)                                                                                        --------->AHL20(2)                                                                                     --------->TOE2(3)                   <---------WOX13(1)                                              <-------TEIL            --------->ATHB12    <---------LBD16                                 --------->YAB1   <---------GLK1(1)   <---------ANAC46                                         -------->HAHB4    <--  --------->ARR14(2)   <---------ANAC58                                        <---------YAB1    <---  <---------ARR14(2)   <---------ANAC58                                       <---------TOE2(3)  ---- >TEIL     <---------AHL20(2)   <---------ANAC46                         <---------ZAT6 <---------AHL20(2) --CCA1(2) <---------YAB1      <---------LBD16                         <---------ANAC46--------->AHL20(2)   tatggatatgtttttaattggattggcttatttttcgggtaatagatgtttatcaagcttgaaattaagagttttgtgttaatgatacattaaattgtaa  9160600                                                                                   <-----------GT1                                                                                  --------->WRKY12                                                                                  ----------->HVH21                                                                             <---------AHL20(1)                                                                             --------->AHL20(2)                                                                             --------->AHL20(1)                                                                             <---------AHL20(2)                                                                    --------->TOE1(2)    <----------DOF2                                                                   --------->At4g35610  <---------MYB52(1)                                                                  --------->ARR14(2)<---------At5g28300                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  <---------ARR14(2)<xxxxxxxxxxxxxxxx                                                                 <---------CCA1(2)xxxxxxxxxxxxxxxx>smallRNA(i)                                                           --------->GLK1(2)--------->AHL20(2)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                   <---------MYB52(1)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <---------ARR14(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) >YAB1                     --------->ARR14(2)              xxxxxxxxxxxxxxxxx>smallRNA(fl3) <--------- -------MYB46(3)           <---------GLK1(2)           <------MYB83<---------At4g35610 xxxxxxxxxxxxxx ------YAB1         --------->AHL20(2)                 <------MYB46(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->ICU4         <---------AHL20(2) <-----------GT1--------->MYB59 xxxxxxxxxxxxxxxx>smallRNA(i) <x   tggttgtaagattgcagaaagttttattagatactctgttttttcgaaacaaatgttcggtaatctggtatctgcgaaataaatttgaccgtttttctgt  9160700               <------MYB46(1)              --------->MYB59              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------------AtSPL3        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxx>smallRNA(i)      ----------->HVH21        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------MYB52(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------At5g28300     --------->At5g28300 <--------P  <---------AHL20(2)  <---------LBD16  --------->GLK1(2) --------->AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(i)        --------->AHL20(1) xxxxxxxsmallRNA(fl3)  ----------->GT1    --------->WRKY12 --GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<-----------GT1              <----------DOF2            <- xx>smallRNA(i)<------MYB83          <---------AHL20(1)               <----------DOF2              <- xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->AHL20(2)      <---------YAB1                   <-------TEIL   ttttcgcggtaaatgttcggtaatctggtaactcagaaataaatttgaccgttttctatattttcattcgcgctctttttgaacatggtaagggatacat  9160800                                                           --------->AHL20(2)          xxxxxxxxxxxxxx                           <--------P                    <----------DOF2<---------At4g35610       <---------TOE2(3)  <---------MYB52(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------YAB1    <---------ARR14(2)              ---------->ID1    --------->GLK1(2)          <-- ---------DOF2       --------->ARR14(2)             <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------DAG2 <---------ZAT6            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------TOE2(3)   actttattttagattagtgagaggtttcggtaagtgtttatcaaatattcagtttttcgctttaaatttcggtaatctgatatttaagaaataagtttga  9160900  Previous    Next  AGI:  At5g26210.1    Description:  PHD finger family protein. Identical to PHD finger protein At5g26210 [Arabidopsis Thaliana] (GB:O81488;GB:Q8LBJ5); similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G42790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43863.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 9158321    to: 9160386    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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