Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          ------>ZmHOX2a(1)                                   <---------MYB46(3)                            <---------AHL20(1)                                  --------->ALFIN1                               <---------AHL20(2)                                  <---------AtMYB61                        <-----------GT1                               --------->ALFIN1                        <---------DAG2                         ------>ZmHOX2a(1)       --------->At4g35610   <----------DOF2            <--               <---------TOE2(3)<---------MYB46(3)  -------->P   <-----------GT1 --------->AHL20(2)        ----------------->AGL3 <---------AtMYB61 <---------At4g35610<---------ALFIN1             ----   cagtatcgtttccatttaagtttgctcctcatggtggtggtcctaaaactcatctacccatacttcttcaccacttttttcattttattttgcaatagaa  8588800                                         xxxxxxxxxxxxxxxxx>smallRNA(le3)                                         <------MYB46(1)                                        <---------MYB46(3)                                        --------->ALFIN1                                       <---------MYB52(1)                                       <--------P                                       --------->ALFIN1                ------>ZmHOX2a(2)                                      <-------GAMYB                   <------ZmHOX2a(2)                                     <---------DEAR3(2)              <---------ARR14(2)                                     <---------MYB46(3)              --------->ARR14(2)            --------->At4g35610     <---------DEAR3(1)               --------->ARR11(3)   --------->YAB1            <---------At4g35610   ------------>AtMYB77               <---------ARR11(3)<xxxxxxxxxxxxx            <---------ZAT2  ----------->GT1               <---------WRKY12             --------->WOX13(1)        <-----------HVH21   <---------MYB46(3)          <-----------HVH21<---------MYB52(1)      ---- -------ALFIN1             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <------ZmHOX2a(2)   <---------YAB1 ----->MYB46(3)          <---------AtLEC2<------MYB83  <xxxxxxxxxxxxxxxxsmallRNA(s)<-----------GT1   ccactctctgtgtcagcttatggatttgaatggttacgacggttggggcgaacaaaaccgtcaatggatcagatcgttttttgttttatcattcatcaaa  8588900                                                      --------->At4g35610                                                      <---------At4g35610                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                   --------->At4g35610                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(i)               --------->LBD16                  xxxxxxxxxxxxxxxx>smallRNA(s)              --------->HSFB2a(2)              --------->SPL7              <---------HSFB2a(2)             ------>NtERF2             <---------LBD16                 --------->LBD16            --------->PCF5                 ------>NtERF2          <---------MYB46(3)               xxxxxxxxxxxxxxxx>smallRNA(s)         <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->At4g35610         --------->ALFIN1                  <---------LBD16         <---------AtMYB61               <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------ZAT14                    xxxxxxxxxxxxxxxx>smallRNA(s)     --------->At4g35610                <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------At4g35610                --------->At4g35610     <------NtERF2                      <---------At4g35610                                        xx     --------->LBD16                    xxxxxxxxxxxxxxxx>smallRNA(i)                               <x   <---------LBD16                     xxxxxxxxxxxxxxxx>smallRNA(s)                            <-----   --------->ZAT18                  xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(s)  <-----------GT1       <---------At5g28300 xxxxxxxxxsmallRNA(si3) --------->AHL20(2) <---------At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxx ----->YAB1<---------SPL7         xxxxxxxxxxxxxxxx>smallRNA(s)<---------MYB52(1) xxxxxxxxxxxxxxxx>smallRNA(i)   aatagtccgcagtggtccggaccaaaaaaaatagaagaaaaccgctgcggaccatctgcagaccgtttttacatacaaataaacttggtttacagcgatt  8589000                                                        <------NtERF2                                                        <---------At4g35610                                                        --------->At4g35610                                                      --------->ZAT18                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                 <----------DOF2                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                <xxxxxxxxxxxxxxxxsmallRNA(i)                               --------->At4g35610<xxxxxxxxxxxxxxxxsmallRNA(i)                               --------->LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <xxxxxxxxxxxxxxxxsmallRNA(s)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxsmallRNA(s)                 xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s)        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)        <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)       --------->RAP2.3(3)   xxxxxxxxxxxxxxxx>smallRNA(i)  ------>NtERF2       ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ------>NtERF2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)     <------NtERF2        <---------ZAT14xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)     ------>NtERF2     <---------ANAC46<xxxxxxxxxxxxxxxxsmallRNA(i)   <---------ZAT18<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(i)                              <----- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)    --------->YAB1         --------->DAG2 -----DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i)             ---------->DOF2 xxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ATERF1(1)    --------->YAB1   tatagtccgccccaaaaatgagatggagtaaaccgcagacaaattagaccgctttgtccgctgcctccattcataacctataaatcatataaaaaagttc  8589100                                                                     --------->ATHB12                                                                     <---------ICU4                                                                     --------->YAB1                                                                  <---------ICU4                                                                  --------->YAB1                                                             --------->LBD16            --------->TOE2(2)                                                            --------->HSFB2a(2)         --------->TOE1(2)                  --------->ATHB12                          <---------HSFB2a(2)       <---------YAB1             --------->ANAC55(2)                         --------->ARR14(2)         <---------ICU4             --------->ANAC58                       <---------ETT(2)<---------YAB1  --------->YAB1             <---------ANAC55(2)       <-----------RAV1(1)<------ZmHOX2a(2)      --------->YAB1             --------->ANAC46        ----------->RAV1(2) <---------ARR14(2)   --------->YAB1     --------->ARR14(2)     --------->YAB1          --------->ETT(2)--------->ICU4 <---------YAB1<--- --TEIL      --------->ANAC58  --------->AHL20(2)  --------->DDF1--------->ICU4 <---------YAB1  -----   gtagacaaatttgctacgcatcatttgctaaaataaaacacctgttgccaaatgtcgacgatccagaattatgattacaagtatcatcatcatacgatta  8589200                                                                                            <--------                                                                                          <-------MYC3                                                                                          <-------MYC2                                                                                          ------->MYC2                                                                                          <-------PIF5                                                                                          ------->PIF5                                                                                          ------->MYC4                                                                                          <-------MYC4                                                                                          ------->MYC3                                                                                         ============                                                                                         <---------TGA1a                                                                                         --------->O2                                                                   <---------MYB52(1)    --------->ANAC55(2)        ----------->GT1                                    <---------AHL20(2)            <---------O2      ---------->DOF2                                      --------->AHL20(2)        <---------At5g28300     <---------AHL20(2)                                   --------->AHL20(1)        <-----------GT1   ----------->TBP                      ----------->GT1   <---------AHL20(1)    <---------ARR11(3) <---------AHL20(2)                     --------->ANAC58  --------->AHL20(2)    --------->ARR11(3) --------->YAB1                      *TSS --------->AHL20(2)   <-----------GT1<---------TOE2(3)   <-- --------->AHL20(2)              --------->YAB1   --------->At4g35610 <---------ANAC58   <---------ANAC55(2) ------YAB1             --------->ANAC46--------->ANAC58  <---------AHL20(2)  ----------->ARR10   <-- ------->CBF  ---------->DOF2 --------->YAB1      <---------At4g35610 <---------ANAC58   --------->TGA1a   caattatataaagaaataaagaacacacagaactataatgccaagtaatttcatcagaaataaaattacgttgtttggctaagattttaccacgtgtcaa  8589300                                                                                    ----------->RAV1(1)                                                                                    --------->TOE2(3)                                                                                    ------->GAMYB                                                                                   --------->MYB46(3)                                                                                   <---------MYB55(2)                                                                                  ------>MYB46(1)                                                                                  -------->P                                                                                <---------MYB55(2)                                                                                --------->AtMYB61                                   <-------MYC3                                 <---------MYB46(2)                                   ------->MYC3                                 --------->DEAR3(1)                             --------->PCF2                                     <---------MYB111(1)                             --------->ANAC46                                   --------->MYB46(3)                            ------->TEIL                         --------->ANAC58 ------>MYB83                   <---------GLK1(1)                  --------->ANAC58          <---------MYB111(2) ---HVH21  <---------HSFB2a(2)  <---------ALFIN1      --------->ANAC58       --------->ZAT6 ========bZIP_DOF  --------->GLK1(1)             ----------->HVH21      --------->YAB1      --------- -------DAG2      --------->ARR14(2)            <---------WOX13(1)      ----------->GT1 ---------->DOF2 --------DOF2     <---------ARR14(2)          --------->ATHB12   --------->ANAC58--------->MYB55(1)   cttttcattcgatctagatggatacccatggaccccacatggatagactcattgacacgctcatgtgaagccaatagtaacaccaaccacaaaagaaaga  8589400                                                                                                   <-                                                                                                   --                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                ---------->DOF2             ---------                                                              <------NtERF2               -----------                                                             <-----------HVH21            --------->DEAR3(1)                                                            <---------ANAC58  <---------ANAC58<------                                                            <----------ID1    <---------ANAC46<------                                                            <---------ANAC46  <---------ANAC58<------                                                            <---------bZIP60(1)      --------->ARR14(2)                                                            --------->bZIP60(1)      <---------ARR14(2)                                                            <---------ANAC58 <-------TEIL--------->At4g35610                                                  ----------->GT1       <---------------------WRI1<-- ->DOF2                        ---------->DOF2  ----------->GT1<---------WRKY12 --------->AtLEC2<----   gagagagagagacactgaaacatagagagaagaaaaagaagaggtttagagagagaaaaatggcgtcaaagctctgcgattcgtgcaaatcagcgacggc  8589500                                                                                           <-------MYC3                                                                                     <-------MYC2 --------ANAC46                                                                      ------->MYC3 --------->GT1                                                                       <-------MYC3 ------DEAR4(2)                                                                      ------->MYC2 ------RAP2.3(1)                                                                    --------->ANAC58 ------ERF1                                                                       <---------ALFIN1 ------ATERF1(1)                                                                 <---------REM1(2) ------ORA47(2)                                                                <---------TGA1a ------RRTF1(1)                                                                --------->bZIP60(1) -->NtERF2                                                                     <---------bZIP60(1) -----RAP2.3(3)                                                                <---------O2------->MYC3 -----RRTF1(3)                                                                 --------->bZIP60(2) -----RAP2.3(2)                                                                --------->ANAC58 ---->DEAR3(1)                                                                 --------->ANAC46 ----ABI4(1)                                                                   --------->ANAC58 -NtERF2                                                     ------>NtERF2     --------->O2<-------MYC2 --->ATERF1(1)                                               <------NtERF2     --------->TGA1a ---RRTF1(1)                                                --------->LBD16<-----------TGA1------->MYC2 ---DEAR4(2)                                               <---------DEAR3(1)  =====================bZIP_bZIP --RAP2.3(2)                                              ------->MYC3     <-----------HVH21 --O2                 <------NtERF2                       <-------MYC3    <---------TGA1a <---------ANAC58 ->O2     --------->DEAR3(1)                          <---------WRKY38(1) <---------bZIP60(1) --DEAR3(1)<---------RAP2.6(3)                   ========================================bZIP_DOF >ATERF1(1)--------->ORA47(1)                    ===================================bZIP_DOF--------- >HVH21   <---------ETT(2)                       ---------->DOF2  --------->MYB46(3)--------->ANAC58< ---RAP2.3(1)     --------->ANAC58     --------->TOE1(2) --------->O2     <---------O2    --------->TGA1a ---ERF1  <---------ETT(1)            <---------ZAT2  <---------ZAT18     --------->TGA1a <---------ANAC46 ---ATERF1(1)     --------->ANAC46    <---------At4g35610--------->ANAC46 --------->ANAC46<---------TGA1a ----NtERF2------>NtERF2              --------->At4g35610<---------O2     --------->O2    <---------ANAC58 -----DEAR3(1)    --------->ANAC58    --------->ZAT2  --------->ZAT18     --------->bZIP60(1) -------   ggcgttatactgccgaccagacgcagcgtttctatgcttaagctgcgattcaaaagtccacgcggcgaacaaactcgcgtcacgacacgcgcgcgtgtgg  8589600                                   ------->PIF5                                   ------->MYC2                                   ------->MYC3                                   ------->PIF4                                   <-------MYC4                                   <-------PIF5                                   <-------PIF4                                   <-------MYC3                                   ------->MYC4                                  ================bZIP_DOF          ------->PIF4                                  =======================bZIP_bZIP  <-------MYC3                                  ================bZIP_DOF          <-------PIF4                                  <---------ANAC58                  ------->MYC3                                  --------->ANAC55(2)               ------->PIF5                                  --------->TGA1a                   <-------MYC4                                  <---------bZIP60(2)               <-------MYC2                                  <---------TGA1a                   ------->MYC4                                  --------->O2                     <---------ANAC55(2)                                  <---------ANAC55(2)              <---------ANAC46                               ----------->HVH21                   <---------ANAC58                              <-----------HVH21                    --------->ANAC55(2)                              <-----------TGA1                     --------->TGA1a                             --------->O2                          <---------O2                             <---------TGA1a                       <---------bZIP60(2)                             <---------O2                      <-----------TGA1                             --------->bZIP60(2)               <-----------HVH21                             --------->TGA1a            <-----------HVH21                             =====================bZIP_DOF     <-----------------PIF3(1)                             --------->ANAC55(2)        =====================bZIP_DOF                             <---------ANAC55(2)        <----------DOF2                             --------->ANAC58        --------->RAP2.6(2)                             --------->ANAC46       <---------DEAR3(1)                         <---------ALFIN1           --------->ATERF1(1)                      <-------PIF5<---------O2     --------->ATERF1(1)                      --------->ATERF1(2)          <---------DREB2C(1)  <---------PCF2                      --------->DEAR3(1)           ------>NtERF2   --------->O2                      --------->DREB2C(2)          <------NtERF2----------->HVH21                      ------->PIF5<---------ANAC58 --------->DREB2C(1) ----------->HVH21                      <---------ATERF1(2)          <---------ATERF1(1)--------->SPL7                    --------->MYB52(1)            --------->DEAR3(1)<-------PIF5                 --------->ANAC58 <---------ANAC46<---------ATERF1(1)--------->ALFIN1             --------->ANAC58--------->ANAC55(1) <---------RAP2.6(2)------->MYC2             --------->ANAC58=====================bZIP_DOF    --------->ANAC46           <---------ANAC58  --------->ANAC58    --------->ATERF1(1)--------->TOE1(2)       --------->ALFIN1--------->LBD16 ======================================bZIP_DOF     <---------ANAC46<---------LBD16   ==================bZIP_DOF ------------>OsbHLH66   <---------ZAT14--------->MYB46(3)   ---------->DOF2<------NtERF2<---------TGA1a   --------->ZAT14<---------ABI4(2)<-------MYC2====================bZIP_DOF                        <- >ALFIN1--------->ZAT18<-----------HVH21       <---------TGA1a<---------ANAC58  --------->GLK1(1)  -- ---------ANAC46 --------->ANAC58------------>OsbHLH66------>NtERF2<---------ANAC58           ------- -->ALFIN1 <---------ANAC58<---------ALFIN1    <---------O2   <---------ANAC58  <---------GLK1(1) <--   atgtgtgaagtgtgcgagcaagcaccggcacacgtcacgtgcaaagcagacgcggccgcgttatgcgtcacgtgcgaccgtgatatccactcggctaatc  8589700  Previous    Next  AGI:  At5g24930.1    Description:  zinc finger (B-box type) family protein. Identical to Zinc finger protein CONSTANS-LIKE 4 (COL4) [Arabidopsis Thaliana] (GB:Q940T9); similar to COL3 (CONSTANS-LIKE 3), protein binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G24790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14549.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 8589237    to: 8591239    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version