Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------ICU4                                     --------->HSFB2a(1)                                    <---------ATHB12                                   ------>MYB46(1)                                 <---------MYB59                                 --------->AtMYB61                               -------->P <---------HSFB2a(2)   <---------At4g35610                 <                   <----------DOF2 ------>MYB83                 --------->At4g35610                <-                --------->GLK1(2)------->GAMYB               ---------->DOF2                       --               <---------GLK1(2)--------->MYB46(3)   ------->GAMYB                       <---------ANAC58   ------>ZmHOX2a(1)          --------->WOX13(1)     --------->DEAR3(1)                  <---------ANAC58 ---TEIL --------->YAB1     <---------ATHB12         --------->RAP2.6(2)            --------->ATHB12=   caatcctcgtttcataagattctttctcaaatcaaccaaacattccataagaaaaccgcctcttaaagctgaaaacatagtcacaaagattgagtgatca  8537700                                                                                                   <-             <---------WOX13(1)                                                           ------>ZmHOX2a(2)           <------ZmHOX2a(1)                                                            --------->ARR14(2)       ---------->DOF2                        <----------DOF2               ---------->DOF2      ---- ------ZmHOX2a(2)         <---------WOX13(1) <----------DOF2            <---------ZAT6 <------ZmHOX2a(1) --------ARR11(3)       --------->ATHB12   --------->LBD16              <---------ANAC46<---------ARR14(2) ------->ARR11(3)      <---------YAB1    <---------LBD16         --------->ICU4  --------->CCA1(2) -- =================HOX2a_HOX2a    <---------ICU4                --------->CCA1(2)<----------ID1  -----   agatcacaaaaaaggattgatttttatgattggaaacattacctccggttttagggaagttgaagaaatgagtagtgtgaaagagacgaggatcgagaca  8537800    --------->ANAC58    --------->ANAC46    ----------->GT1                                                 ------>ZmHOX2a(2)    --------->ANAC58             <----------DOF2                   <------ZmHOX2a(2)            <---- --------ZAT14                ------>MYB83                <---------GLK1(1)              <---------MYB52(1) ----->At5g28300              ------>MYB46(1)            <---------ARR11(3)            ----------->GT1 ------->ZAT14        <------ZmHOX2a(1)     <---------ANAC58      <---------ARR11(3) --------->GLK1(2) ------>GT1        --------->At4g35610      <---------ANAC58      --------->ARR11(3)<---------GLK1(2)   gtaaacaggcaaaatggtatcagaggaagaccaagctttgtacaatgcgtcattgtcaagaactctgagatcgtttctgaaccagagaatcgttactcct  8537900                                      <---------CCA1(2)                                     ------->TEIL                                     <---------ARR14(2)                                     --------->ARR14(2)                                    <------NtERF2                                     <---------ARR11(1)                                   --------->LBD16                                  <---------ANAC55(2)               --------->WOX13(1)   --------->RAP2.6(2)                      >>>>>>>>>TBF1 <---------CCA1(2)       --------->ATERF1(1)         <---------LBD16              ------->GAMYB       <---------ANAC58          <------NtERF2           ----------->ARR10       <---------------AGL15      --------->ANAC55(2)      ------>NtERF2         <-----------HVH21   <----------DOF2<------ZmHOX2a(1) <---------ARR14(1)    --------->ETT(2)     <---------DEAR3(1)   < ------DOF2--------->MYB52(1)     <---------ANAC58        <---------DEAR3(1)  ------>ZmHOX2a(1)   ---   ttcccctttctcttaacggaggaagaagaaggtaatgcgtatctctcaaatgtttttatggcgacggagtcaatctcttcctcggtgagagccggaacac  8538000                                  <------ZmHOX2a(1)                            <---------At4g35610                            --------->At4g35610                            --------->ZAT2                          --------->ATERF1(1)                          <------NtERF2                         --------->LBD16                        <---------DEAR3(1)                        --------->ALFIN1                        <---------ANAC46                       ------>NtERF2                       --------->ATERF1(1)                       <---------LBD16                       <---------At4g35610                       <------NtERF2                      <---------RRTF1(1)                      <---------RAP2.3(1)                                                         <--                     <---------RAP2.6(2)                                                          ---                     <---------RAP2.3(2)                                                    ---------                     <---------RAP2.3(3)                                                    ---------                <---------ICU4 --------->At4g35610                                        <---------ARR14(2)         <---------MYB46(3) <---------ZAT2                                                --------->ARR14(2)   --------->CCA1(2) <---------DEAR3(1)                       =======================================  <---------ARR14(2) <---------RRTF1(3)                       <----------DOF2             --------->GLK1(2)  --------->ARR14(2) <---------RRTF1(2)                   --------->GLK1(1)               ------->TEIL ---------MYB46(3)  <---------LBD16                ---------->DOF2            ----------->GT1     <-- ------>At5g28300  <-----------RAV1(1)         <------ZmHOX2a(1)     ----------->GT1 ----------->GT1-   ggtggatatggtcgttcatttttgcggcggagcagaggaacagagaagaggaagaaaggggtttctttgagaggtgaagatggtgaagagtgaatctgcg  8538100                                                <---------TOE2(3)                                                --------->ANAC55(2)                                               <---------LBD16                                         <------NtERF2                                        ------>NtERF2                                        <---------RAP2.6(3)                                       --------->RAP2.6(2)                 <---------DAG2                                       --------->DEAR3(1)                  ==========================                                       --------->RAP2.3(2)            <---------At4g35610  <------MYB83                         --------->RAP2.3(3)         --------->TGA2(2)  <------MYB46(1)                      --------->ANAC46           <-----------TGA1 -------O2                            --------->ERF1              <-----------HVH21 ------>O2                            --------->RAP2.3(1)        --------->ANAC55(2) >TOE2(2)                             --------->ATERF1(1)        --------->bZIP60(1) >TOE1(2) *TSS                       <---------ATERF1(1)         <---------bZIP60(1) =======bZIP_DOF                     <---------At4g35610        <-----------STF1 -------TGA1a <------ZmHOX2a(1)      --------->At4g35610       <-----------GT1 -------->ALFIN1                  <------ZmHOX2a(1)       <----------DOF2  <----------DOF2   --------   aagtgggtttgagagaggagaagagagcgagagagaggaagccgccatttacggatgatgctttgtaacgtcatctactttttggtgtttgtgttttgac  8538200                                       --------->ANAC55(2)                                       <---------ANAC55(1)                                       <---------ANAC46                         <-------GAMYB <---------ANAC55(2)                         <---------ANAC58                         ========================MYC_MYB                         <---------ANAC58                        <---------MYB46(3)                        --------->ATHB12                 <-----------HVH21     <---------ANAC58               ------->MYC3            --------->O2               <-------MYC3            <---------bZIP60(2)               -------->ABF1           <---------TGA1a               ------->MYC2            --------->bZIP60(1)               <-------MYC2            <---------ANAC58               ------->MYC4            =============================bZIP_DOF               <-------MYC4            <---------bZIP60(1)              ===================MYC_MYB              <---------TGA1a          --------->TGA1a              =====================MYC_MYB   <---------MYB46(3)              <---------ANAC55(2)      <---------O2              --------->TGA1a       ----------->HVH21              --------->ANAC55(2)  <-----------HVH21                 ------>ZmHOX2a(2)              <--------ABF1       <---------ANAC58                  <---------At4g35610              <---------O2  <------MYB46(1) <---------ANAC46       <---------ARR11(3)              --------->O2<--------P----------->TGA1               <---------ARR14(2)         ----------->HVH21=======================MYC_MYB           <---------AGP1   <---------ANAC46  <---------O2 <---------ANAC58      <---------DAG2 =======================bZIP_DOF <-----------------------TaNAC69(2)--------->ARR14(2) --->HVH21  <---------ALFIN1<------MYB83 --------->ALFIN1<----------DOF2   gagttgtggatgcgacacgtgtcacttggttgggaagcgtgacgtggtggatgtctagccttttgtctggatctgtctctgtttttgttatacaaaaaaa  8538300                                                                           <----------DOF2                                                                        <---------YAB1                                                                       --------->KAN4(2)        <----                                                                      <---------KAN4(1)         <----                                                                      --------->KAN4(1)         -----                                                                     <---------KAN4(2)          -----                                                                     <---------YAB1             <----                <----------DOF2                                    <------ZmHOX2a(1)         <-------               <---------DAG2            --------->DAG2          <---------TOE1(3)           <-------             <---------ZAT18            ---------->DOF2          <---------TOE2(3)           <-------   aaaaaacttgactagtgcctttttttttttttgtctaattcaaaaagcttatgtgagagagaatgttaaggattattctttttttttttttttttgggtg  8538400                                               <----------DOF2                                              <---------ANAC58                                              <---------ANAC58 -----ZAT18                                   <---------ANAC46 -----ZAT14                              --------->ATHB51 ---->ZAT18         <---------AHL20(2)   <---------ICU4 ---->ZAT14       <---------RVE1(1)      --------->ATHB12 ---TEIL         <---------ARR11(3)     <---------YAB1                 <----------DOF2 --------->TOE2(3) --ANAC46        --------->ARR11(3)   <---------ICU4                  --------------->AGL15       <-- --ANAC58       <------ZmHOX2a(1)    <---------YAB1                   =============================== --ANAC58   ---------->DOF2          --------->ICU4                <-----------GT1     --------->YAB1   cacaaaaaaaaaaaaaaaggatttttttttttgagacacattattattgcttttatttggcaaaagttttcacctttaatataaaacaaacttaatcttt  8538500                                                                                          ------>ZmHOX2a(1)                                                                                     <---------At4g35610                                                                                     --------->At4g35610                                                  <------MYB83                      <---------ATERF1(1)                                   --------------->AGL15                           <---------RAP2.3(3)                                   <---------------AGL15                          <---------At4g35610                                  <-----------------AGL3            XXXXXXXXXXXXXXXXXXXX>MIR779.2                                  ----------------->AGL3            ------>ZmHOX2a(2)<---------ZAT2                           --------->ZAT14        <------MYB46(1)   =============================HOX2a_HOX2a       ----------->GT1     <---------ZAT14       --------->MYB46(2)<---------At4g35610   <---------ALFIN1 ---------GT1          --------->ANAC46          --------->MYB59   --------->At4g35610   <xxxxxxxxxxx ==================================================MADS_MADS --------->TOE1(2)<----------DOF2   tttccaagtttgtgaataagtctatactctacagtctctatttttagtagtttggtaatcgaacatgtgatctgaaatttctttggctgctcctcttctc  8538600  Previous    Next  AGI:  At5g24850.1    Description:  CRY3 (CRYPTOCHROME 3); DNA binding / DNA photolyase/ FMN binding. Identical to Cryptochrome DASH, chloroplast/mitochondrial precursor (CRYD) [Arabidopsis Thaliana] (GB:Q84KJ5;GB:Q8VZD8); similar to PHR2 (PHOTOLYASE/BLUE-LIGHT RECEPTOR 2) [Arabidopsis thaliana] (TAIR:AT2G47590.1); similar to Cryptochrome DASH, chloroplast/mitochondrial precursor (Cryptochrome-3) (GB:Q38JU2); similar to unnamed protein product [Vitis vinifera] (GB:CAO43953.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79842.1); contains InterPro domain Cryptochrome, DASH (InterPro:IPR014133); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050 Range:  from: 8535285    to: 8538110    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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