Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <------ZmHOX2a(1)                                                 <---------LBD16                                               =====================================HOX2a_HOX2a                                               ===============HOX2a_HOX2a                                               ==================================HOX2a_HOX2a                                               ===================HOX2a_HOX2a                                              ===================================HOX2a_HOX2a                                              ================HOX2a_HOX2a                                              --------->GLK1(1)                                              <------ZmHOX2a(2)                                              ====================HOX2a_HOX2a                                              <---------GLK1(1)                                             <---------ARR14(3)                                             --------->ARR14(3)                                             <---------ARR14(2)                                             --------->ARR11(3)                                  <------ZmHOX2a(1)--------->LBD16                                  ===================HOX2a_HOX2a                                  ====================HOX2a_HOX2a                               <------NtERF2 --------->ARR14(2)                              --------->LBD16<---------ARR11(3)                             --------->DEAR3(1)------>ZmHOX2a(2)                       <---------GLK1(1)    --------->GLK1(1)                       --------->GLK1(1)    <---------GLK1(1)                     <------ZmHOX2a(1)    <------ZmHOX2a(1)<------ZmHOX2a(1)                 <------- <---------MYB52(1)  ================================HOX2a_HOX2a                     --------->TOE2(3) -------->TOE2(3)    =================================HOX2a_HOX2a            <------ZmHOX2a(1) >TEIL     ---------->DOF2  <---------LBD16----------->ARR10              <------ZmHOX2a(1)<---------   ttcgttaatttcccaaagacggaggaaatcgccggaggaagcgaggagatctccggaggaaggacgacggagagaaggaggactgaacattagctttgtt  8372500                           <---------HSFB2a(2)                          <---------LBD16                         <-------TEIL                        --------->GLK1(2)                                          <-------GAMYB                        --------->ARR14(1)                                        --------->MYB111(2)                       <---------GLK1(2)                                          --------->MYB52(2)                       <---------ARR14(2)                                         --------->MYB55(2)                       --------->ARR11(1)                                         <---------MYB46(3)     <---------TOE2(3) --------->ARR14(2)           --------->YAB1               <---------MYB55(1) <------ZmHOX2a(1)   ----------->ARR10    <-----------HVH21                      <--------P    <----- ----RAV1(1)      <------ZmHOX2a(1)   --------->MYB52(1)                        <-------GAMYB  ------ -DOF2 <------ZmHOX2a(1)--------->CCA1(2)------->GAMYB      ---------->DOF2   <---------RAP2.6(2) <--   ggaggataaggatgctcgaaggagagattcgggagaggcttaacggtcattgaatcggaatcgaaagagagaatgtcgatgcggttgttgtaatcttcga  8372600                                                                                                    <                                                                                             --------                                                                                             <-------                                                                                            <-------GAMYB                                                                                           <---------MYB46(3)                                                                                           <---------DEAR3(2)                                                                                          <---------DEAR3(1)                                                                                         <------NtERF2                                                                                        <---------RAP2.3(1)                                                                                        <---------ERF1                                                                                        ------>NtERF2                                                                                        <---------RRTF1(1)           <------NtERF2                                                               <---------RRTF1(3)          ------>NtERF2                                                                <---------ANAC46         <---------DEAR3(1)                                                            <---------bZIP60(1)        --------->SPL7                                                                 <---------O2--      ----------->HVH21                                                                <---------RAP2.3(3) --------->HSFB2a(1)                                                                   <---------RRTF1(2) --------->HSFC1(2)          <------ZmHOX2a(1)                      --------->CCA1(2)  <---------DEAR3(1) --------->At4g35610     --------->LBD16                   <------NtERF2               <---------RAP2.6(2) <---------At4g35610   <---------LBD16                   <---------ANAC58              <---------RAP2.3(2) <---------HSFB2a(1)----------->HVH21            --------->ANAC58  <---------ARR14(2)  --------->ATERF1(2) <---------HSFC1(2)<-----------HVH21             --------->ANAC58  --------->ARR14(2)  <---------ATERF1(2) ----HSFB2a(2) --------->GLK1(2)               ---------->DOF2<---------ANAC46      ----------->HVH21 --->HSFB2a(2) --------->ARR14(2) --------->At4g35610    <---------ANAC46        <---------TOE1(2) <- ----ZmHOX2a(1)<---------ARR14(2) <---------At4g35610    <---------ANAC58     <---------ANAC46  -----   ggaagcttccgacggcgattctgtgaccggaggatgagcggagagaagagaaagccatggcgtagagtggatatggtgagtcgtatgtgacggcggtttc  8372700            --------->GLK1(2)            --------->ARR14(2)                <---------At4g35610       --------->MYB52(1)                  <---------ANAC58 ------>ZmHOX2a(2)                         <---------ANAC58                 --------->ANAC46 ------ZmHOX2a(2)  --------->At4g35610    --------->ALFIN1          <---------ANAC58 ->ARR14(2) <---------ARR14(2)  --------->AtLEC2<---------YAB1      <---------ANAC58 --ARR14(2) ------->TEIL    <---------YAB1<-----------RAV1(1)      ---------->ID1 ------->ARR14(2)  --------->ZAT2         <---------AtMYB61    --------->CCA1(2) --------ARR14(2)  <---------At4g35610  --------->ALFIN1      --------->ARR14(2)           <------ZmHOX2a(1) ------------>AGL1 <---------ZAT2   <---------GLK1(1)         <---------ARR14(2) ---------->DOF2   cgatctggataacgaatctggagctgaattatccatggaaatgtgtggtgctgattcgattcgagatttggcttcttcacgacgaaagtgagaggagagt  8372800                                                                                             <-------                                                                                        <----------DOF2                                                                 <-----------GT1     --------->ARR11(3)                                                             --------->CCA1(2)       <---------ARR11(1)                                                    <---------DEAR3(1)               --------->GLK1(2)                                 <---------------------WRI1 --------->ARR11(3)       <---------ARR14(2)                                ----------->GT1    --------->ATERF1(1)               <---------ARR11(3)                  <---------ARR14(2)      <---------YAB1    <---------ARR11(3)       --------->ARR14(2)                  --------->ARR14(2)    --------->YAB1   <------NtERF2           <---------ICU4         <-----------HVH21   --------->CCA1(2)    *TSS <---------ANAC46          --------->YAB1  ---- <---------TOE2(3)<---------GLK1(2)    --------->ICU4 <------NtERF2           --------->WOX13(1)<----   tttgaggtcagtgtcagtcggatttttcaagagacggagaaataatcaatggagacggcgtagatataaaccctctggattaatcagtatcttttaatgt  8372900                                                                                   --------->ZAT6                                                                                  <------ZmHOX2a(2)                                                                                  ==============HOX2a_HOX2a                                                                           <---------AHL20(2)                                                                           <---------ICU4                                                                           --------->ATHB51                                                                           --------->ATHB12                                                                           -------->ATHB1                                                  --------->TOE2(3)        -------->HAHB4                                                  --------->TOE1(3)       <---------YAB1    --------->YAB1                              <---------TOE1(3)         <---------ATHB51 <------------CBF                               <---------TOE2(3)         <---------ATHB12 --TOE2(3)                                   <---------AHL20(2)           --------->ICU4 --->TEIL                             <----------DOF2                  ------------>ATHB5 -----CCA1(2)              <---------At4g35610 <-----------GT1        <---------MYB59    <------ZmHOX2a(1)   atctattgataatgggcttctgtatattcagataatgggccttttattttaacgttaagagctatagaatggcctaattattggatcactaggatgacat  8373000                                                                            <---------YAB1                                                                        <---------ANAC58                                                                        <---------ANAC58                                --------->YAB1                    <---------AHL20(1)                                <--------HAHB4                    --------->AHL20(1)                               --------->ICU4                     --------->AHL20(2)                               <---------ATHB12                   <---------AHL20(2)        ---------                    ----------->HVH21                            --------->AHL20(2) --------->ARR11(3)                  <---------ANAC55(2)                            <---------AHL20(2) <---------ARR11(3)              --------->AHL20(2)<---------ICU4                 --------->YAB1      --------->YAB1 ---           --------->TOE2(3) --------->YAB1               --------->At4g35610     <---------TOE2(3) --------->ZAT6   --------->ANAC55(2)<-----------GT1      <---------At4g35610     <---------YAB1  <--   gaaacactaacaacattaatatgtgacactctaatcattttactaacaattgtctaattcagctaaaataaattgtttgtgattaagataatcaacaatc  8373100           <---------YAB1         --------->YAB1         <---------ICU4        --------->ICU4        <---------YAB1      --------->YAB1                                            <---------AHL20(2)        --------->ARR11(3)      <---------ICU4            <---------AHL20(2)              --------->AHL20(2)      --------->HSFC1(2)     <---------YAB1            <---------AHL20(2)               --------->AHL20(1)      <---------HSFC1(2)  <---------AHL20(2)           --------->AHL20(1)              --------->AHL20(2)       <---------HSFB2a(1)  <---------YAB1               <---------AHL20(1)         --------->At5g28300           --------->HSFB2a(1) >MYB46(3) --------->ICU4      --------->AHL20(2) <-----------GT1                     ---------->DOF2 --->ZmHOX2a(1)        ----------->GT1        <----------DOF2  <---------AHL20(2)   --------->ANAC58 --------DOF2    <---------TOE2(3)       ---------->DOF2 ----------->GT1            --------->ANAC58   cttttttattattattattaagaaaatgtaaaatttattcgaaaaaagcttttaacattcggtaaataatttgcatacaatttttcaagaaagttctact  8373200                                                                                       <-------TEIL                                                                                     <---------ARR14(2)                                         --------->YAB1                              --------->ARR14(2)                            --------->ZAT2                                      <------ZmHOX2a(2)                            <---------ZAT2                                      --------->CCA1(2)                            --------->HSFB2a(1)                                --------->AGP1                            --------->HSFC1(2)  <---------HSFC1(2)             <---------ARR11(3)                            <---------HSFC1(2)  --------->HSFC1(2)             --------->ARR11(3)                           ------>MYB83 <-------TEIL                           --------->ARR14(2)      <---------ZAT6       ------>MYB46(1)     <---------TOE1(2)               <---------ARR14(2) <----------DOF2---------->DOF2    --------->AtLEC2  <---------CCA1(2)       ----------->ARR10   cccctttagtgtttatattaaagcaaaccaagcttccatgcattcatcgtagcttctatctccttgttcacgaatagagaagatccagattcaaatttgt  8373300                                <-----------RAV1(1)                            <------NtERF2                            --------->At5g28300                          <---------DEAR3(1)                         <------NtERF2                        <---------ATERF1(1)                        --------->LBD16                        ------>NtERF2                        <---------DEAR4(2)                        <---------ERF1                        <---------RAP2.3(1)                       --------->RAP2.3(2)                       --------->RAP2.3(3)                       <---------RAP2.3(2)                       --------->ATERF1(2)                       --------->DEAR3(1)                       <---------DEAR3(1)                      --------->ATERF1(1)                      <---------LBD16                      <------NtERF2                      --------->DEAR4(2)                      --------->DEAR3(2)                      --------->ERF1                      --------->ORA47(2)                                               <------ZmHOX2a(2)                      --------->RAP2.3(1)                                             <---------ARR11(3)                     <---------ATERF1(1)                           ==================================                     ------>NtERF2                                 --------------->AGL15                     <---------RRTF1(1)                            <---------------AGL15                     <---------RAP2.3(1)               <-----------RAV1(1)        --------->ANAC46                    <---------ANAC46              --------->ANAC55(2)        <---------KAN4(2)  -----                --------->At4g35610 ------>NtERF2 <---------ANAC46<-----------------AGL1------>ZmHOX2a(2) ==================================================================================MADS_MADS    <---- <-----------------AGL3<---------ATERF1(2)        <---------ANAC55(2)     ----------->GT1  ----------   ttgtcaatatttggaagcagttgcgccggcggtaatggtgcctctccatgtctcgtattgttgctctctctccatatggaataaacgcgatctcaaaggt  8373400  Previous    Next  AGI:  At5g24520.1    Description:  TTG1 (TRANSPARENT TESTA GLABRA 1); nucleotide binding. Identical to Protein TRANSPARENT TESTA GLABRA 1 (TTG1) [Arabidopsis Thaliana] (GB:Q9XGN1;GB:Q5PP66;GB:Q9FT87); similar to ATAN11 (ANTHOCYANIN11), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G12910.1); similar to transparenta testa glabra 1 protein [Matthiola incana] (GB:CAE53274.1); similar to transparent testa glabra 1 isoform 2 [Brassica napus] (GB:ABP04014.1); similar to transparent testa glabra 1 isoform 1 [Brassica napus] (GB:ABP04011.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contain Range:  from: 8370590    to: 8372850    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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