AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                                  ------>NtERF2
                                                                 ----------->HVH21
                                                       ------>MYB46(1)
                                                       ------>MYB83
                                                      ----------->RAV1(1)                     <-----
                                         <---------ZAT18         --------->ANAC46           --------
                               <---------YAB1        --------->AtMYB61    --------->ICU4  <------ZmHOX2a(2)
           <---------MYB46(3)--------->ATHB12     --------->ANAC46----------->RAV1(1)     ----------
        <---------ZAT6       <---------ICU4   <-----------HVH21 --------->LBD16          --------->ARR11(3)
<---------ATHB12            --------->ICU4   --------->AtMYB61 --------->ANAC46          <---------ARR11(3)
---------TOE2(3)         <---------YAB1  --------->ZAT18      <---------LBD16        ---------->DOF2
>ID1    <-----------RAV1(1) <---------YAB1<---------ALFIN1   <---------At5g28300 >>>>>>>>>>MYB80 ---
 
ctaatgaagtagtgttgttgtctatattctgattattagaagagtccaccttcacaccaacattttccgcgacagccatgatcaaaccaaaagatcaatg  8347800
                                                                                           ---------
                                                                                           <--------
                                                                                           -------->ATHB1
                                                                                          <---------AHL20(2)
                                                                            <---------YAB1--------->AHL20(2)
                                                                           <---------AHL20(2)
                --------->AHL20(2)                                     ----------->GT1    --------->ICU4
                <---------AHL20(1)                                     --------->ATHB12   <---------YAB1
     --------->ARR11(3)                                               <---------YAB1      --------->AHL20(1)
<----------DOF2 --------->AHL20(1)                                    --------->ICU4   --------->ICU4
----ATHB12      <---------AHL20(2)                                <------ZmHOX2a(1) <------ZmHOX2a(1)
->WOX13(1)<------MYB46(1)                                       <---------TOE1(3)  ----------->GT1 <
-->CBF    <------MYB83----------->TBP                           <---------TOE2(3) ----------->GT1  -
---->TEIL ----------->GT1                                 <------ZmHOX2a(1)--------->AHL20(2)<------
 
aatctttagatgttggtaataaaatataaaaaaacaactcatgcactggagaaaggttagaggatttaaggagatgattaaaatagaggaaaaattatta  8347900
                                                                                                 ---
                                                                                                 <--
                                                                                                 ---
                                                                                                 <--
                                                                                                ----
                                                                                                <---
                                                                                              ------
                                                                                              <-----
                                                                                             <------
                                                                                             -------
                                                                                            <-------
                                   <---------ARR11(3)                                       --------
                                   <---------GLK1(2)                                        <-------
                        <-----------GT1                                                --------->AHL20(2)
 <----------DOF2     --------->ARR11(3)                                    --------->ANAC58 --------
>YAB1              ----------->ARR10<---------RVE1(1)                      --------->ANAC58---------
-ICU4             --------->YAB1   --------->ARR11(3)                --------->AHL20(2)<---------AHL20(1)
---------------AGL15 <---------GLK1(2)      <---------AHL20(2)     --------->ANAC58    --------->AHL20(1)
-------------->AGL15 <---------ARR11(3)<---------YAB1              ----------->GT1------------>CBF
---YAB1      ------------>CBF    --------->ICU4  <---------AHL20(2)--------->ANAC58    <---------AHL20(2)
 
tgctctttatagctaaaacaattagattttctagtcaagatttttatttcatttttttttgacattagtcaagaaaataagcaaatacaataaattataa  8348000
 <---------AHL20(2)
 --------->AHL20(2)
------>AHL20(2)
-------ICU4
------>ATHB51
-------AHL20(2)
----->ICU4
------YAB1                                                                                 <--------
--->YAB1                                                          --------->TOE2(3)    <---------AHL20(2)
----ICU4                                                       <-----------GT1         --------->AHL20(2)
---YAB1                                                     --------->YAB1     <---------YAB1
-->ICU4                                                     <---------ICU4  --------->GLK1(2)
--AHL20(1)                                                 --------->ICU4  <---------GLK1(2)      --
->AHL20(1)         <---------At4g35610              ---------->DOF2        <---------ARR14(2)   <---
--AHL20(2)         --------->At4g35610    <-----------GT1  <---------YAB1  --------->ARR14(2)  <----
->AHL20(2)     <-----------HVH21      <-----------GT1 ----------->GT1     <------ZmHOX2a(1)---------
>YAB1     <----------DOF2          <---------AHL20(2)--------->DAG2  --------->YAB1<---------AHL20(2)
 
ttatttaaattttctttgtgtcagcacaatttctgcatttttttcttactacatataaagttattattacattaataggattctgtttatttttttaatt  8348100
                                                                            --------->TGA1a
                                                                            <---------O2
                                                                        <------NtERF2
              <---------------AGL15                                  --------->SPL7
              --------------->AGL15                                 <---------MYB52(1)
    --------->YAB1                                                  <-----------HVH21
    --------->TOE2(3)                                      --------->AHL20(2)
 <---------CCA1(2)                                         ------------>CBF --------->O2
-AHL20(2)    <-----------------AGL2                   ------------>CBF <---------DEAR3(2)
------->ZAT6 <-----------------AGL3                   <---------ATHB12<---------DEAR3(1)         ---
--------GT1  <-----------------AGL1                 --------->WOX13(1)<---------ETT(2)   --------->GLK1(2)
-----ICU4    <-----------------AG    --------->AHL20(2)<---------ICU4--------->RAP2.6(3)<---------GLK1(2)
>AHL20(2)  <-----------GT1   ----------->GT1    ----------->GT1 --------->MYB52(1)   --------->YAB1
 
atctctatcttatttatctagttttggtaagagagaaaaaaaaaatcgaaccggttaatcaattcaataccggtcggccaagtgtctctcagaatttgac  8348200
                                                                                                 ---
                                                                                                 ---
                                                                                                ----
                                                                                                ----
                                                                                               <----
                                                                                               -----
                                                                                               -----
                                                                                <---------MYB52(1)
                                                                              <---------DEAR3(1)<---
                      <----------ID1                                      --------->HSFC1(2) <------
          --------->ARR14(2)                                              <---------HSFC1(2)--------
          <---------MYB52(1)                                      --------->LBD16 ------>NtERF2-----
       ------>ZmHOX2a(2)                    *TSS                 <---------ANAC46 <---------MYB46(3)
      <------ZmHOX2a(2)       <---------MYB52(1)                 <---------ANAC58 --------->ABI4(2)
     <---------ARR14(2)      --------->TOE1(3)                   <---------ANAC58<---------DEAR3(1)<
     --------->ARR14(2)      --------->TOE2(3)        <------ZmHOX2a(1)---------->DOF2      <-------
--------->CBF--------->GLK1(2)--------->DOF5.7(2)   ----------->GT1--------->AtLEC2<------NtERF2----
 
cccaattcgatccgatattctgaaaacgacaacgttagcatttcgccatttagaacaggaaatagtttccgtgcaaaagcttcggtggctcttctcccac  8348300
 <---------MYB52(1)          <---------MYB52(1)
<---------SPL7              <---------SPL7
--->NtERF2                  ------>NtERF2
------>ABI4(1)              <-----------HVH21
----->DREB2C(2)            --------->RAP2.3(3)
--->GAMYB                  --------->DEAR3(1)
-----MYB55(2)             --------->DEAR4(2)
---->MYB46(3)             --------->RAP2.3(1)                      --------->MYB52(1)
---->DEAR3(2)           --------->DEAR3(1)           ------>ZmHOX2a(2)  <-----------------AGL2
------ALFIN1           --------->DEAR3(2)           <------ZmHOX2a(2)  --------->At4g35610
---ALFIN1              --------->MYB46(3)          --------->ARR11(3)  <---------At4g35610
->MYB46(3)            --------->SPL7               <---------ARR11(3)--------->MYB46(3)
---->DEAR4(2)        <---------PCF5                --------->AGP1 ----------->HVH21
---------ANAC46     <---------SPL7        --------->AHL20(2)  <------ZmHOX2a(2)
--MYB55(2)          --------->LBD16       <---------AHL20(2) <---------ARR14(2)--------->HSFB2a(2)
----->DEAR3(1)    <---------LBD16       <----------DOF2      --------->ARR14(2)<---------HSFB2a(2)
 
cgccgtatgttcttccagcgctccggaccgccgtctggtctgactttaatttgagatctattccgatccctaacagctacttctggtatactatcgttct  8348400
                 --------->ARR14(2)
                 <---------ARR14(2)
              <---------ANAC46
              <---------ANAC58
              <---------ANAC58                                                              <-------
         --------->AtMYB61                        <---------YAB1                           <--------
      <---------ALFIN1   ------>ZmHOX2a(2)      --------->YAB1                             <--------
 
ctctctctaacacctctgcgtatttggatcgtattgactagagtcttcccattatacttgcatcgttctctcttccatggtttcgaacttgtttaagctt  8348500
                                              <---------ANAC58                                 <----
                                <---------ANAC58                                            --------
                                --------->ANAC55(2)                                        <--------
                                <---------ANAC58                                    --------->LBD16
                                <---------ANAC55(1)                                --------->HSFB2a(2)
--At4g35610             ---------->DOF2       <---------ANAC58                    <---------LBD16
-TOE1(3)       <-----------GT1  <---------ANAC55(2)    ----------->ARR10         --------->MYB52(1)
-TOE2(3)<---------ARR11(3)      <---------ANAC46  <-----------RAV1(1)     <----------DOF2  ---------
 
atagtcttcaataccttctaactatctaaaaggtttcgtgtttcaatttgcttctggtgcgatttgctcagtgttttctttctctaccggaatcagctct  8348600
      <---------ANAC58                                                <---------ANAC58
-----HSFB2a(2)                                                        <---------ANAC58           <--
->AGP1<---------ANAC58                                --------->GLK1(2)             <---------YAB1
-At4g35610                                            <---------ARR11(3)   <-----------GT1      ----
>At4g35610     <---------AHL20(2)                     --------->ARR11(3)<---------ZAT6     <--------
 
agacaaattgtttgctatgttattgtattcactgggattttggatagtcccagtgaaaatctttcaatcttgttcgtgttacattttctgatttatgaga  8348700
<- Previous    Next ->

AGI:  At5g24440.1   
Description:  CID13 (CTC-Interacting Domain 13); RNA binding. similar to CID10, RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT3G49390.1); similar to CID10, RNA binding [Arabidopsis thaliana] (TAIR:AT3G49390.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48581.1); contains InterPro domain Ataxin-2, C-terminal (InterPro:IPR009818); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 8345405    to: 8347779    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g24450.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49410.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64550.1); contains domain GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 (PTHR13230)
Range:  from: 8348245    to: 8353306    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version