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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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  --------->ARR11(3)
  --------->AHL20(1)
  <---------AHL20(1)
<---------AHL20(1)
--------->AHL20(1)                  --------->REM1(1)              <---------ANAC58
-------->AHL20(2)               --------->At4g35610                <---------ANAC46
---->AHL20(1)                   --------->ZAT2                     <---------ANAC58  <----------ID1
---->AHL20(2)                  --------->ANAC46          ----------->GT1 --------->MYB59
-----AHL20(2)              <-----------GT1       ---------->DOF2  <-----------------------TaNAC69(2)
->YAB1                 --------->AHL20(1)<---------YAB1  <---------MYB46(3)<------ZmHOX2a(1)       -
 
aaatatatattgatcacaagaatacatatattaccagctacactatgagtcgcaaagtagtcgttaaacagcgtgttaggactaaatagcgactaaaaca  8084700
                                     ------->TEIL
                                   <-------TEIL
                                  --------->ANAC58
                                  --------->ANAC58
                                 ------->MYC3
                          <------ZmHOX2a(2)
                         --------->ARR14(3)
                         --------->ARR14(2)
                         <---------ARR14(2)
                         --------->GLK1(2)--------->ANAC58                                         <
             <------MYB83<-----------ARR10--------->ANAC58                                       <--
             <------MYB46(1)     <-------MYC3                                                    ---
            --------->MYB59------>ZmHOX2a(2)                                                --------
           <--------P    --------->ARR11(3)                                         <---------ARR11(3)
 ----------->GT1         <---------ARR11(3)              <----------DOF2            --------->ARR11(3)
--------->DAG2           <---------ARR14(3)    <-----------ARR10      --------->TOE2(3)<----------DOF2
--------->DOF2          <------ZmHOX2a(1) --------->ANAC46       ---------->DOF2---------->DOF2-----
 
aataaagtaaacaagtaggtttatggaggatcttcacatgcatccacacaaatctaagcgcttgagtttaaagccttattttttaaagagctttgctcac  8084800
                                                        --------->HSFC1(1)
         <---------TOE2(3)                              <---------HSFC1(1)
         <---------TOE1(3)          <---------WOX13(1)  --------->HSFB2a(2)                       --
--------->ANAC46                 <---------AHL20(2)     <---------HSFB2a(2)                    -----
--------->ANAC58                 --------->AHL20(2)  <---------YAB1                     --------->MYB52(1)
--------->ANAC58            <---------ARR11(3)     -------->HAHB4                     <---------MYB52(2)
---------LBD16          --------->YAB1            --------->ICU4                   XXXXXXXXXXXXXXXXX
-------ZAT14  --------->ANAC58 <----------DOF2    <---------YAB1            --------->ZAT6--------->MYB46(3)
------>ZAT14  --------->ANAC58------>ZmHOX2a(2) <---------ICU4        <-----------GT1 --------->MYB46(3)
->ZAT18 <-----------RAV1(2) --------->ARR11(3)  --------->YAB1       --------->AHL20(2)------->GAMYB
---->ANAC46 <--------P<-----------GT1     --------->At4g35610  --------->YAB1    --------->ANAC46---
 
tgcacggatgttcaggtaagaaatttttcatgatctttaattgatagctaaaaatgattctagaaatcaaaatttactatctctactcaactaacaatcc  8084900
          <-----------GT1
       <---------ICU4                                  <---------At4g35610
      <---------ARR11(3)                               --------->At4g35610
      --------->AHL20(2)                             <-----------RAV1(2)
      <---------AHL20(1)                             <---------HSFB2a(2)
      --------->AHL20(1)                        <---------ATHB12            ----------->GT1       <-
--------->RAV1(1)                    <---------YAB1 ------>ZmHOX2a(2)   <---------WRKY12         ---
---->ANAC46                    <---------ARR11(3) --------->ARR11(3) <---------ZAT6--------->YAB1---
XXX>MIR851-5P                  --------->ARR11(3)-------->HAHB4 <----------DOF2  --------->AHL20(2)<
------>ANAC46            --------->ANAC46     --------->YAB1------->TEIL<---------WRKY38(1)     ----
 
acaacacaaaatattacattctatctatccacaagagcttatgagtcactaatgatccagatgaactctttagagtcaatggaaaataatagtagatggg  8085000
                                          <---------AHL20(2)
         --------->REM1(2)               <---------AHL20(2)                                    -----
   --------->ANAC58                      --------->AHL20(2)                            <---------ARR11(3)
   --------->ANAC46                   <---------AHL20(2)                               --------->ARR11(3)
   --------->ANAC58                   --------->AHL20(2)        --------->AHL20(2)     <-----------ARR10
 <---------ALFIN1                  --------->YAB1               <---------AHL20(2)    --------->RVE1(1)
-----NtERF2                       <---------ATHB12             --------->ICU4         --------->CCA1(1)
-------->RAV1(1)              --------->MYB46(3)            <---------AHL20(2)      *TSS     <------
--->NtERF2                    ------------>CBF            <---------ANAC55(2)   --------->AHL20(2)
---------ALFIN1            <------ZmHOX2a(1)              --------->ANAC55(2)  --------->AHL20(2)
------->HVH21---------->DOF2<---------ARR14(2)     <---------CCA1(2)         --------->YAB1  -------
 
cgacacacgctgtgaagaaagacagagggaggaaccaatgataaattaatgtccatctcttatgtaattttttggattaaaaataaaaaatatctcgcct  8085100
                                                               <------ZmHOX2a(2)
                                                              --------->ARR11(3)
                                                              <---------ARR11(3)
                                                             --------->GLK1(1)
                                                           <------NtERF2
                                                       ------>NtERF2
                                                       --------->LBD16
                                                      --------->HSFB2a(2)
                                                      <---------ATERF1(2)
  <-----------GT1                                     --------->ATERF1(2)
---->HSFB2a(2)             <---------TOE2(3)          <---------HSFB2a(2)    <-------GAMYB
---ANAC46 <---------AHL20(2)      --------->ANAC46   <---------LBD16        <---------MYB46(3)     <
---->RAV1(2)           <---------At4g35610       <----------DOF2------>ZmHOX2a(2)          <--------
 
ggaatttacctagtttattgatttttagctaatgtagacgacgctccatttgctcttccggcagagatcgtggcacaagcggttgcagagaaccgtttca  8085200
                 <---------bZIP60(1)
            <---------At4g35610                                 --------->ARR14(2)
           <---------DEAR3(1)                                   <---------ARR14(2)
           <---------MYB46(3)                                   <-----------ARR10
        <---------SPL7                                         <---------GLK1(2)
       <---------DEAR3(1)                                   --------->LBD16                    -----
       <---------RAP2.6(2)                                  ------>NtERF2                     <-----
      --------->RAP2.6(3)                         <---------ANAC46                  <------MYB46(1)
      --------->SPL7                              <---------ANAC58                  <------MYB83
    ----------->HVH21                             <---------ANAC58         <-----------HVH21  <-----
    <---------SPL7       <----------ID1        <---------RAP2.6(2)        --------->WOX13(1) <------
---------YAB1 --------->ALFIN1    --------->TOE1(2)<----------DOF2     <-----------HVH21     -------
-MYB52(1) <---------------------WRI1         <-----------RAV1(1)--------->GLK1(2)  <---------MYB46(3)
 
ttttgatgggacggccggtgatgccaaggagacaaaacattcgatcgattgtggcttcaatgccgagaatctggggtcagtcagggctggtccatggacg  8085300
                                                               --------->DEAR3(1)
                                                               <---------ANAC46
                                                  --------->ARR14(1)
      --------->LBD16                             --------->CCA1(2)
     --------->HSFB2a(2)                         --------->ARR11(1)
     <---------LBD16                             <---------ARR14(2)
     <---------HSFB2a(2)                         --------->ARR14(2)<------ZmHOX2a(1)
    <---------ANAC46                        --------->TOE1(2) <------NtERF2
    <---------LBD16                        --------->ATHB12   ------>NtERF2
   <---------LBD16               <---------At4g35610         <---------RAP2.3(1)
------>GT1                       ----------->RAV1(2)        <---------RAP2.6(2)
----RAP2.6(2)                    --------->At4g35610   --------->ALFIN1     <---------ANAC58
----DEAR3(1)            <-----------GT1  --------->GLK1(2)<---------bZIP60(2)            <---------MYB52(1)
---ORA47(1)            <-----------GT1   <---------ARR14(2) <---------DEAR3(1)     ----------->HVH21
-->RAP2.6(3)          <---------AHL20(2) --------->ARR14(2)<---------LBD16  <---------ANAC58
 
gctaatttcggggaatcaatttcaatttatcttcccatctgaagaatccttggatacggtgatgcggcgaggaccatgggcgttcaatgaccgtatgttg  8085400
                      <---------ATHB12                 <-------TEIL
           <---------PCF2                             --------->CCA1(2)
         <---------MYB46(3)                          <---------ARR14(2)
         --------->MYB55(2)                   <---------DAG2
         --------->ABI4(2)                    <----------DOF2
        <---------DEAR3(1) ------->GAMYB     <---------DAG2
        --------->ALFIN1  --------->MYB46(3)----------------->AGL1           --------->ZAT6
        <---------AtMYB61-------->P   --------->AHL20(2)           --------->ATERF1(1)           ---
     <---------DEAR3(1) --------->MYB52(1)<---------CCA1(2) --------->CCA1(2)<-----------GT1  <-----
    <---------At4g35610 <-----------GT1--------------->AtSPL8 --------->DAG2<---------YAB1    ------
 
atactccagcggtggttccctacaaatcaaccgctcatcaatttcatacctttttggatacagataaggggcatcccttatcactatctcactcgtgaag  8085500
     ------->MYC3
     <-------MYC2
     ------->MYC2
     <-------MYC4
     <-------MYC3                                                 <---------ANAC46    <---------TOE2(3)
 <---------ZAT18                                           <---------DEAR3(1)         <---------TOE1(3)
------>ATHB12                        <-------GAMYB<---------HSFB2a(2)      <---------YAB1
----bZIP60(1)   --------->ZAT18     <---------MYB46(3)    <---------At4g35610        <-----------RAV1(2)
--->bZIP60(1)   <---------ZAT18    <---------TOE2(3)      --------->At4g35610       <-------TEIL
 
tcattgcacatgttgggagggctcttggaaacttgatggaggttgacttcggtctagagacagcggctcgtgtggattatgttcgggttcaggttaactg  8085600
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AGI:  At5g23955.1   
Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.6e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Range:  from: 8085085    to: 8090425    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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