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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ARR11(3)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(1)
--------->
REM1(1)
<---------
ANAC58
-------->
AHL20(2)
--------->
At4g35610
<---------
ANAC46
---->
AHL20(1)
--------->
ZAT2
<---------
ANAC58
<----------
ID1
---->
AHL20(2)
--------->
ANAC46
----------->
GT1
--------->
MYB59
-----
AHL20(2)
<-----------
GT1
---------->
DOF2
<-----------------------
TaNAC69(2)
->
YAB1
--------->
AHL20(1)
<---------
YAB1
<---------
MYB46(3)
<------
ZmHOX2a(1)
-
aaatatatattgatcacaagaatacatatattaccagctacactatgagtcgcaaagtagtcgttaaacagcgtgttaggactaaatagcgactaaaaca
8084700
------->
TEIL
<-------
TEIL
--------->
ANAC58
--------->
ANAC58
------->
MYC3
<------
ZmHOX2a(2)
--------->
ARR14(3)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
GLK1(2)
--------->
ANAC58
<
<------
MYB83
<-----------
ARR10
--------->
ANAC58
<--
<------
MYB46(1)
<-------
MYC3
---
--------->
MYB59
------>
ZmHOX2a(2)
--------
<--------
P
--------->
ARR11(3)
<---------
ARR11(3)
----------->
GT1
<---------
ARR11(3)
<----------
DOF2
--------->
ARR11(3)
--------->
DAG2
<---------
ARR14(3)
<-----------
ARR10
--------->
TOE2(3)
<----------
DOF2
--------->
DOF2
<------
ZmHOX2a(1)
--------->
ANAC46
---------->
DOF2
---------->
DOF2
-----
aataaagtaaacaagtaggtttatggaggatcttcacatgcatccacacaaatctaagcgcttgagtttaaagccttattttttaaagagctttgctcac
8084800
--------->
HSFC1(1)
<---------
TOE2(3)
<---------
HSFC1(1)
<---------
TOE1(3)
<---------
WOX13(1)
--------->
HSFB2a(2)
--
--------->
ANAC46
<---------
AHL20(2)
<---------
HSFB2a(2)
-----
--------->
ANAC58
--------->
AHL20(2)
<---------
YAB1
--------->
MYB52(1)
--------->
ANAC58
<---------
ARR11(3)
-------->
HAHB4
<---------
MYB52(2)
---------
LBD16
--------->
YAB1
--------->
ICU4
XXXXXXXXXXXXXXXXX
-------
ZAT14
--------->
ANAC58
<----------
DOF2
<---------
YAB1
--------->
ZAT6
--------->
MYB46(3)
------>
ZAT14
--------->
ANAC58
------>
ZmHOX2a(2)
<---------
ICU4
<-----------
GT1
--------->
MYB46(3)
->
ZAT18
<-----------
RAV1(2)
--------->
ARR11(3)
--------->
YAB1
--------->
AHL20(2)
------->
GAMYB
---->
ANAC46
<--------
P
<-----------
GT1
--------->
At4g35610
--------->
YAB1
--------->
ANAC46
---
tgcacggatgttcaggtaagaaatttttcatgatctttaattgatagctaaaaatgattctagaaatcaaaatttactatctctactcaactaacaatcc
8084900
<-----------
GT1
<---------
ICU4
<---------
At4g35610
<---------
ARR11(3)
--------->
At4g35610
--------->
AHL20(2)
<-----------
RAV1(2)
<---------
AHL20(1)
<---------
HSFB2a(2)
--------->
AHL20(1)
<---------
ATHB12
----------->
GT1
<-
--------->
RAV1(1)
<---------
YAB1
------>
ZmHOX2a(2)
<---------
WRKY12
---
---->
ANAC46
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ZAT6
--------->
YAB1
---
XXX>
MIR851-5P
--------->
ARR11(3)
-------->
HAHB4
<----------
DOF2
--------->
AHL20(2)
<
------>
ANAC46
--------->
ANAC46
--------->
YAB1
------->
TEIL
<---------
WRKY38(1)
----
acaacacaaaatattacattctatctatccacaagagcttatgagtcactaatgatccagatgaactctttagagtcaatggaaaataatagtagatggg
8085000
<---------
AHL20(2)
--------->
REM1(2)
<---------
AHL20(2)
-----
--------->
ANAC58
--------->
AHL20(2)
<---------
ARR11(3)
--------->
ANAC46
<---------
AHL20(2)
--------->
ARR11(3)
--------->
ANAC58
--------->
AHL20(2)
--------->
AHL20(2)
<-----------
ARR10
<---------
ALFIN1
--------->
YAB1
<---------
AHL20(2)
--------->
RVE1(1)
-----
NtERF2
<---------
ATHB12
--------->
ICU4
--------->
CCA1(1)
-------->
RAV1(1)
--------->
MYB46(3)
<---------
AHL20(2)
*
TSS
<------
--->
NtERF2
------------>
CBF
<---------
ANAC55(2)
--------->
AHL20(2)
---------
ALFIN1
<------
ZmHOX2a(1)
--------->
ANAC55(2)
--------->
AHL20(2)
------->
HVH21
---------->
DOF2
<---------
ARR14(2)
<---------
CCA1(2)
--------->
YAB1
-------
cgacacacgctgtgaagaaagacagagggaggaaccaatgataaattaatgtccatctcttatgtaattttttggattaaaaat
aaaaaatatctcgcct
8085100
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
GLK1(1)
<------
NtERF2
------>
NtERF2
--------->
LBD16
--------->
HSFB2a(2)
<---------
ATERF1(2)
<-----------
GT1
--------->
ATERF1(2)
---->
HSFB2a(2)
<---------
TOE2(3)
<---------
HSFB2a(2)
<-------
GAMYB
---
ANAC46
<---------
AHL20(2)
--------->
ANAC46
<---------
LBD16
<---------
MYB46(3)
<
---->
RAV1(2)
<---------
At4g35610
<----------
DOF2
------>
ZmHOX2a(2)
<--------
ggaatttacctagtttattgatttttagctaatgtagacgacgctccatttgctcttccggcagagatcgtggcacaagcggttgcagagaaccgtttca
8085200
<---------
bZIP60(1)
<---------
At4g35610
--------->
ARR14(2)
<---------
DEAR3(1)
<---------
ARR14(2)
<---------
MYB46(3)
<-----------
ARR10
<---------
SPL7
<---------
GLK1(2)
<---------
DEAR3(1)
--------->
LBD16
-----
<---------
RAP2.6(2)
------>
NtERF2
<-----
--------->
RAP2.6(3)
<---------
ANAC46
<------
MYB46(1)
--------->
SPL7
<---------
ANAC58
<------
MYB83
----------->
HVH21
<---------
ANAC58
<-----------
HVH21
<-----
<---------
SPL7
<----------
ID1
<---------
RAP2.6(2)
--------->
WOX13(1)
<------
---------
YAB1
--------->
ALFIN1
--------->
TOE1(2)
<----------
DOF2
<-----------
HVH21
-------
-
MYB52(1)
<---------------------
WRI1
<-----------
RAV1(1)
--------->
GLK1(2)
<---------
MYB46(3)
ttttgatgggacggccggtgatgccaaggagacaaaacattcgatcgattgtggcttcaatgccgagaatctggggtcagtcagggctggtccatggacg
8085300
--------->
DEAR3(1)
<---------
ANAC46
--------->
ARR14(1)
--------->
LBD16
--------->
CCA1(2)
--------->
HSFB2a(2)
--------->
ARR11(1)
<---------
LBD16
<---------
ARR14(2)
<---------
HSFB2a(2)
--------->
ARR14(2)
<------
ZmHOX2a(1)
<---------
ANAC46
--------->
TOE1(2)
<------
NtERF2
<---------
LBD16
--------->
ATHB12
------>
NtERF2
<---------
LBD16
<---------
At4g35610
<---------
RAP2.3(1)
------>
GT1
----------->
RAV1(2)
<---------
RAP2.6(2)
----
RAP2.6(2)
--------->
At4g35610
--------->
ALFIN1
<---------
ANAC58
----
DEAR3(1)
<-----------
GT1
--------->
GLK1(2)
<---------
bZIP60(2)
<---------
MYB52(1)
---
ORA47(1)
<-----------
GT1
<---------
ARR14(2)
<---------
DEAR3(1)
----------->
HVH21
-->
RAP2.6(3)
<---------
AHL20(2)
--------->
ARR14(2)
<---------
LBD16
<---------
ANAC58
gctaatttcggggaatcaatttcaatttatcttcccatctgaagaatccttggatacggtgatgcggcgaggaccatgggcgttcaatgaccgtatgttg
8085400
<---------
ATHB12
<-------
TEIL
<---------
PCF2
--------->
CCA1(2)
<---------
MYB46(3)
<---------
ARR14(2)
--------->
MYB55(2)
<---------
DAG2
--------->
ABI4(2)
<----------
DOF2
<---------
DEAR3(1)
------->
GAMYB
<---------
DAG2
--------->
ALFIN1
--------->
MYB46(3)
----------------->
AGL1
--------->
ZAT6
<---------
AtMYB61
-------->
P
--------->
AHL20(2)
--------->
ATERF1(1)
---
<---------
DEAR3(1)
--------->
MYB52(1)
<---------
CCA1(2)
--------->
CCA1(2)
<-----------
GT1
<-----
<---------
At4g35610
<-----------
GT1
--------------->
AtSPL8
--------->
DAG2
<---------
YAB1
------
atactccagcggtggttccctacaaatcaaccgctcatcaatttcatacctttttggatacagataaggggcatcccttatcactatctcactcgtgaag
8085500
------->
MYC3
<-------
MYC2
------->
MYC2
<-------
MYC4
<-------
MYC3
<---------
ANAC46
<---------
TOE2(3)
<---------
ZAT18
<---------
DEAR3(1)
<---------
TOE1(3)
------>
ATHB12
<-------
GAMYB
<---------
HSFB2a(2)
<---------
YAB1
----
bZIP60(1)
--------->
ZAT18
<---------
MYB46(3)
<---------
At4g35610
<-----------
RAV1(2)
--->
bZIP60(1)
<---------
ZAT18
<---------
TOE2(3)
--------->
At4g35610
<-------
TEIL
tcattgcacatgttgggagggctcttggaaacttgatggaggttgacttcggtctagagacagcggctcgtgtggattatgttcgggttcaggttaactg
8085600
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AGI:
At5g23955.1
Description:
transposable element gene. non-LTR retrotransposon family (LINE), has a 2.6e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Range:
from: 8085085
to: 8090425
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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