Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          ------->MYC3                                        <-------MYC3                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   ----------->RAV1(1)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <--------P                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <------MYB83                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <------MYB46(1)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ARR14(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)        <---------ARR14(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------AGP1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->AGP1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ARR11(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB59   --------->ARR11(3)   xxxxxxxxxxxxxxxx>smallRNA(i)------>ZmHOX2a(2)        ---------->DOF2       <- ------ANAC58  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------- ----->ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<------ZmHOX2a(2)      <----------DOF2 <---------- ------ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ARR11(3) <---------At4g35610<---------WOX13(1)   cgtaagttcttatcaacttgtaatggtcttctggttgcaccatatgctcatagatctagtgtatttggtacaactgcttaaaagtttttgatttactcta  8052100                            ------>ZmHOX2a(1)             --------->CCA1(2)            <---------ARR14(2)             <---------TOE2(3)            --------->ARR14(2)     --------->ALFIN1                                  --------->AHL20(2)          ----------->ARR10--------->TOE2(3)                               <---------ANAC46         - --------AHL20(1)          --------->TOE1(3)                              <-------TEIL              < >ZAT6  ------->GAMYB   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <---------YAB1--------->ANAC55(2)  --- -GT1--------->MYB52(1) <-----------GT1  <---------AHL20(2)    <---------ATHB12      <---------AHL20(2)   gtatatttaacggagatttgcctatttttccttaagggtgtgtttaatgttttcatgttgaaacaatgaatgaagtttcatgtaattttaaatgaatgag  8052200              --------->ARR14(2)              --------->AGP1    <---------ICU4   <---------YAB1   --------->ICU4 --------->YAB1                                                                                    -- <---------ICU4<------ZmHOX2a(2)                                                                   <- -------->ICU4<---------ARR14(2)                                                                ----- ---------ATHB12                                                 <---------ZAT18               ------ ------>WOX13(1)    <----------DOF2                          <---------YAB1                  --------   caatcataatgaaaccgatctactttgaagtttgaacatacaatagaattgactcatatgcttataatggactcaccatctatgtttcactgctaccaca  8052300                                      <-------GAMYB                                     ----------->GT1                                     <------MYB83 ------------->AGL15                 <---------MYB46(3)                                  ------>MYB83 --------------AGL15                 <------MYB46(1)        ----------->GT1              ------>MYB46(1) ------>RAV1(1)  <-----------GT1    <---------AtMYB61     ----------->GT1            ------->TEIL --->ANAC46     <-------TEIL <----------DOF2      <---------TOE2(3)              --------------->AtSPL8 ->AtMYB61    <---------GLK1(2)  <-----------RAV1(1)  ---------->DOF2         --------->AHL20(2)   acattttttggtaaaagattcactaatccctctttgtgttggttaaaaaatcaaggtaaagagagaaaaaatttcaaagattatatgtaccaaatgaaca  8052400                                                   <------MYB83                                                   <------MYB46(1)                                                   ----------->GT1                                                  <---------AtMYB61                        <---------ANAC58                                                 <--------P                                <---------ANAC46                                              --------->LBD16                              <---------ANAC58                                             <---------LBD16<-----------GT1               <------NtERF2                                      --------->CCA1(2)  <---------ICU4                  ------>NtERF2                                     --------->AHL20(1)  --------->YAB1             <---------At5g28300                 <---------YAB1      --------->ARR11(3) <---------YAB1              <---------LBD16            ----------->GT1    ----------->GT1<---------LBD16       --------->AHL20(2)   --------->ABI4(2)        ---------->DOF2     ---------->DOF2 <---------LBD16<---------YAB1       <----------DOF2 <<<<<   ---------->DOF2  <---------HSFB2a(2)    ------->TEIL --------->ICU4   <-----------GT1 <---------MYB46(3)   atttgaaaagaaaagggttattttagaagtaaaaggaaatatatggaccggggaggttattattacagaattaaaaaaccctctttcacggtggcttctt  8052500                                                                                  --------->LBD16 <--                                             ---------->DOF2                    <---------LBD16   <--                                        --------->SPL7                     ------>ZmHOX2a(1)      ---                                       --------->MYB52(1)           ----------->HVH21             ---       *TSS             <---------TOE1(3)--------->ANAC58   <---------ANAC58    <-------------------- <----------DOF2        <---------TOE2(3)--------->ANAC58   <---------ANAC58    --------->At4g35610 <<<<TBF1 <---------At4g35610         <---------SPL7       <---------DEAR3(1)   <---------At4g35610   cttctttagttcatcggagaaattttagggtttatatcggcgaacggaaaagatgggtacttcggtgcaagtgactcctctctgcggagtttacaacgag  8052600                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                              ===========================HOX2a_HOX2a                                                             --------->ARR11(3)                                                             <---------ARR11(3)                                                           --------->HSFB2a(1)                                                       <------MYB83                                                       <------MYB46(1)                                                     <--------P==========================HOX2a_HOX2a                                                    <-------GAMYB                                                   <---------MYB46(3)              --------->TOE1(1)  ------>ZmHOX2a(1)                                --------->MYB55(2)    --------->O2           ----- -------ARR14(2)                        ==============================HOX2a_HOX2a ------>ZmHOX2a(1) ---------ARR10                         ------>ZmHOX2a(1)  <---------HSFB2a(1)    <---------HSFB2a(2) ------>GLK1(2)         --------->YAB1  =============================HOX2a_HOX2a  --------->HSFB2a(2) ------>ARR14(2)     --------------------->WRI1   <---------AtMYB61    <---------ALFIN1        <----- -WRI1   ------>ZmHOX2a(1) <---------MYB46(3)   <-----------RAV1(1) --------->ANAC46  ------->TEIL   aatcctctctcctacttagtctccattgatggtttcaacttcctcatcgactgtggttggaacgatctcttcgacacatcgctcctcgaacctctctcca  8052700                                      ------>MYB46(1)                                      ------>MYB83          <---------YAB1             --------->WOX13(1)          ------>ZmHOX2a(1)--------->LBD16          --------->ICU4  --------->HSFB2a(2)                                    <---------ANAC58         --------->TOE2(3)<---------HSFB2a(2)                                    <---------ANAC58  <- ---->LBD16               --------->HSFC1(1)                                     <---------ANAC46  -- ------RAV1(2) <-----------GT1   <-----------GT1           <---------GLK1(2)  <--------P       <-----   ggtttctctatccttattatctacatttccagaattcaccaatctaatttgttttgaattcgattcttctggtttacagggttgcttctactatagatgc  8052800                   <-------TEIL                           <---------ANAC46     <----------DOF2                                     <---------ZAT2    <---------ANAC58              <---------ZAT18        --------->ZAT2    <---------ANAC58  --------->ANAC46                   --------->At4g35610     <---------YAB1 --------ARR14(2) --------->CCA1(2)                   <---------At4g35610  ------>ZmHOX2a(1) ------->ARR14(2)<---------ARR14(2)                ---------->DOF2    <---------At4g35610 --TEIL          --------->ARR14(2)       ------>ZmHOX2a(1)           --------->At4g35610   agttttgctttctcatccagatacacttcacattggtgctcttccttatgctatgaagcagcttggactctccgctcctgtttatgctactgagcctgtt  8052900                                                                           <---------YAB1                                                   --------->GLK1(2)  <---------MYB46(3)                                                  <---------ARR11(3)  ----------->GT1                                                  --------->ARR11(3) --------->ALFIN1                                                ----------->ARR10  <---------ANAC46                                            <------MYB46(1)        <---------ANAC58             ------>ZmHOX2a(1)              <------MYB83           <---------ANAC58      <------MYB46(1)                       ----------->GT1      --------->ZAT14  --------->LBD16      <------MYB83                       <------ZmHOX2a(1)       <---------ZAT14 --------->ANAC46  <-     --------->MYB59    --------->YAB1<---------LBD16         --------->MYB52(1)<---------LBD16 -----   catagattaggtctccttacaatgtatgatcagtttttgtccaggaaggtgagattttgttaactactggagtggttatttttgcgcaattgtctgcatt  8053000  Previous    Next  AGI:  At5g23880.1    Description:  ATCPSF100/CPSF100/EMB1265/ESP5 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR); DNA binding / protein binding. Identical to Cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis Thaliana] (GB:Q9LKF9;GB:Q9FF92); similar to CPSF73-I [Arabidopsis thaliana] (TAIR:AT1G61010.2); similar to CPSF73-I, protein binding [Arabidopsis thaliana] (TAIR:AT1G61010.1); similar to CPSF73-I [Arabidopsis thaliana] (TAIR:AT1G61010.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO49431.1); similar to hypothetical protein OsJ_029214 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45731.1); similar to hypothetical protein OsI_031377 Range:  from: 8052507    to: 8058357    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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