Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->ZAT6                           --------->ZAT14                         --------->ANAC46                       --------->ANAC46                   ------>MYB83                   ------>MYB46(1)                 <---------MYB111(1)                 <---------MYB46(2)              ------->GAMYB<---------ZAT14       <---------ZAT6XXXXXXXXXXXXXXXXXXXX>MIR2939             <----------DOF2   --------->YAB1    <-- <---------YAB1  <---------MYB59                <------ZmHOX2a(2)           <---------YAB1  <------ZmHOX2a(1) -------YAB1 --------->MYB46(3)               <---------At4g35610         --------->YAB1   ---------- ------DOF2<-----------GT1----------->RAV1(1) --------->At4g35610   <----------DOF2        <---------   ttgattatactgttaaccacctaatacacaacactaaatcaactattcagatcaaagtttgaagctttcgcttaaatgataatcagaagtatgaggaaaa  8009000                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                      <----------DOF2            ----                                                                  <---------ALFIN1               <---                                                         --------->MYB52(1)                     -----         <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ARR14(2)                      <----    >>>>>>>>>>MYB80                                     <---------ARR14(2)                      <----  ------->GAMYB<---------ANAC58                       --------->LBD16<---------DAG2             ----- <---------MYB52(2)                                  <---------HSFB2a(2)                      ------- --------->MYB46(3)                                  <---------HSFC1(1)                     <-------- --------ID1   <---------ANAC58                      --------->HSFC1(1)                 <----------DOF2 ->GT1  <---------YAB1                               --------->HSFB2a(2)           <----------DOF2--- -ID1--------->MYB46(3) <------ZmHOX2a(1)--------->MYB46(3)     ----------------------->TaNAC69(2)<--   acaacaaaccatcaatggcttcacgaggagtcttgaaacccaaaccaatgttcttccagaaacggtttccacctttaccaggtctctttcctttcccaga  8009100      --------->At4g35610      --------->ZAT2      <---------ZAT2      <---------At4g35610 ------RVE1(1) ------GLK1(1) ----->GLK1(1) ----->RVE1(1)                                                                       <---------At4g35610 ------CCA1(1)                                                              --------->ARR14(2) ---->ARR11(3)                                                              <---------GLK1(2) -----ARR11(3)                                                       --------->GLK1(2) -----ARR14(2)                                                      <---------GLK1(2)--------->At4g35610 ---->ARR14(2) --------->ANAC58                                     --------->ARR14(2)             <- -->LBD16      --------->ANAC58                                     <---------ARR14(2)       <------- -LBD16        --------->ANAC46           ------->TEIL              --------->ARR11(3)    ------->TEIL ------>ARR11(3)                   --------->YAB1                 ----------->ARR10<-----------RAV1(2) -------ARR11(3)             --------->TOE2(3)             ----------->GT1  <---------ARR14(2)    ---   tatcttcgagctgaaacacacaaaaaaaaaacataaatcatatgaatcgatttgtaaatggaagtaataagattctcagatttgttcagatgaatttacc  8009200                <---------ANAC46             <--------P            <---------ANAC58            <---------ANAC58                                                 --------->WOX13(1)     <---------ARR11(3)                                                   --------->ARR14(2)     <---------ARR14(3)                                                   <---------ARR14(2)     --------->ARR11(3)                                                   --------->GLK1(2)     --------->ARR14(3)                                            ---------->DOF2 <------ZmHOX2a(1)     ---------->DOF2                          --------->YAB1 --------TOE2(3)<---------ANAC58          ---------->DOF2       ----------->GT1 ----GT1    <-------GAMYB   <----------DOF2   ---------->DOF2 --------->GLK1(2) --------->YAB1 ------>MYB52(1)<---------ANAC58     <---------ETT(2)     --------->YAB1  <---------ARR11(3)        -   taaggaagaccttgggttgcttaagaaaagctttctcagtctacaaaagaaagaagagaatgagaatcgtaaagagtatctatcagaatgtagaaatgaa  8009300                                                        <---------GLK1(1)                                                        --------->At4g35610                                                        --------->GLK1(1)                                                        <---------ZAT2                                                    --------->ANAC46                                                 <---------REM1(2)                                            <---------At4g35610                                            --------->At4g35610                                         <---------At4g35610                                       <---------WOX13(1)                                     --------->ATHB12   --------->ZAT2  <------ZmHOX2a(1)                    --------->ZAT2   <---------ICU4<---------LBD16   --------->DAG2        --------->YAB1              <---------YAB1<---------ALFIN1  ---------->DOF2               --- --------->DOF2 ------->TEIL      <---------At4g35610   <---------At4g35610                   -------   cacaaaggaatgaaaatgaacctgctcagccatggctactgattgctgctctccacggagctctgaggcaaaaaggatgaagaaaatgcgagaggcaaaa  8009400                                                                   <---------AHL20(2)                                                                 --------------->AGL15                                                                 <----------DOF2                                       *TSS               ------>ZmHOX2a(2)                                     --------->ANAC58    <------ZmHOX2a(2)                                     --------->ANAC58    <---------GLK1(1)                                  --------->LBD16        --------->GLK1(1)                                 --------->HSFB2a(2)    <-----------ARR10                                 <---------HSFB2a(2)    <---------ARR14(3)                         <-                                <---------LBD16         --------->ARR14(3)                       <---                              --------->ARR14(2)        <---------ARR14(2)                       <---                              <---------ARR14(2)        --------->ARR14(2)                       ----                             --------->At4g35610        <---------ARR11(3)                       <---                             <---------At4g35610        --------->ARR11(3)                      <---- ------->DOF2                <---------ZAT2--------->TOE2(3)    <-----------------AGL3  <----------DOF2 --->DOF2                   ----------->ARR10           <---------AGP1             <----------DOF2---   gaaagcgaatgagagtaatctcaagtagtgaagctccggaagaaaccctagtttcgaagatctctctctttatttgggtttgggcctttgttttatgggc  8009500          --------->AHL20(1)          --------->AHL20(2)          <---------AHL20(1)          <---------AHL20(2)    <-----------GT1                                                      <---------ZAT18 --------MYB52(1)                       <----------DOF2      --------->ANAC58 ------ANAC46                        <-----------------AGL1  --------->ANAC46 ------ANAC58                        ----------------->AGL1  --------->ANAC58 ------->GT1           --------->At4g35610                  <---------LBD16 ------ANAC58     ------->GAMYB     <---------ZAT18         --------->LBD16 -----DEAR3(1) <-----------GT1<-----------RAV1(1)         ------>ZmHOX2a(2)   --------->ZAT14       - ------>At5g28300<---------LBD16--------->ALFIN1    <----------DOF2      --------->ZAT18        -----   cgtgatttacattttattaaccggctactgaaatgttgggcccttttgggccaactttgatccacggataaattgttcgctatactattgtgactcgttc  8009600                                                 --------->YAB1                <---------ATHB51                                           <-------GAMYB                    --------------->AGL15                                          <------MYB83                     <-----------------AGL3           --------->ATHB12 <---------YAB1<------MYB46(1)             <---------ICU4 <---------PCF2 -------->At4g35610  <-----------GT1 --------->ATHB12        <---------YAB1<-----------------AGL2 ---->MYB52(2)      <---------AHL20(2)   <---------AtMYB61<---------AHL20(2)<---------------AGL15   gtagctaaaacattgatttgattttatcttatgctacattgatttggttgagcataacattttatgatgcaaacatttcaaattatgggaccttgttctc  8009700                                              <---------LBD16                                              <------NtERF2                                              --------->LBD16                   <---------ANAC55(2)       <---------DEAR3(1)                   <---------ANAC58          <---------ANAC46                   --------->ANAC55(2)       <---------LBD16                                        -                   <---------ANAC58         --------->ATERF1(1)                                    <-             <---------ALFIN1               <---------LBD16                                 <--------          <---------PCF5                    <------NtERF2                                   ---------      --------->ARR14(2)            --------->ATHB12               --------->ANAC46       -------->ATHB1      --------->MYB52(1)            --------->YAB1               <-----------GT1     <---------ANAC55(2)      <---------ARR14(2)           <---------YAB1         --------->YAB1 ---------->DOF2 <---------YAB1   --------->ANAC55(2)           --------->YAB1<------NtERF2 --------->AHL20(2)      --------->ANAC55(2) <-----------GT1  --------------->AtSPL3   ------>NtERF2 <------ZmHOX2a(2)  <----------ID1--------->ATHB51   gttttacatatcggaccacttacgtactactacatttatgataggggccgggggatgcgatcataaattacgacataaagaacaaatatgtattattgta  8009800                                                                               --------->YAB1                                                                            --------->WOX13(1)                                                                        --------->At4g35610                                                                        ------>NtERF2                                                                       --------->DEAR3(1)                                        <---------------AtSPL8      --------->ANAC46           --------->DAG2               --------->ARR11(3)          --------->ANAC58         <-------       --------->YAB1                   --------------->AtSPL8      --------->ANAC58        --------- ------->P---------->DOF2               --------------->AtSPL3    --------->MYB52(1)        --------- ----------GT1                    --------->YAB1                <---------MYB52(2)      --------->ARR11(3) -------AtSPL8                   <---------ATHB12               --------->MYB46(3)      <---------ARR11(3) ------>AtSPL8       ---------->DOF2---------->DOF2           <-----------GT1 <---------ATHB12   cttaccaattcataaagctaagagaaagcctttcaatgaaaagatgtacaaatacaaatcaaattaacaaacgcagcccaatcaatataagatgttgacc  8009900  Previous    Next  AGI:  At5g23740.1    Description:  RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome. Identical to 40S ribosomal protein S11-3 (RPS11C) [Arabidopsis Thaliana] (GB:P42733;GB:Q9FFA6); similar to EMB1080 (EMBRYO DEFECTIVE 1080), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G48930.1); similar to 40S ribosomal protein S11 [Chenopodium rubrum] (GB:CAK22271.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) Range:  from: 8008013    to: 8009439    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g23750.1    Description:  remorin family protein. similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT3G48940.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73187.1); contains InterPro domain Remorin, C-terminal region (InterPro:IPR005516); contains InterPro domain Remorin, N-terminal region (InterPro:IPR005518) Range:  from: 8009809    to: 8011622    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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