Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->DAG2                                                              <---------ANAC46                                                              <---------REM1(1)                                                           <---------AtMYB61                                                --------------------->WRI1                                                <----------DOF2    <------ZmHOX2a(1)              ----------->GT1                <---------AHL20(2)  ----------->GT1             ----------->GT1       --------->ANAC58   --------->MYB52(2)       ----------->GT1       ---------->DOF2             --------->ANAC58 <---------MYB52(1)---------->DOF2    ----------->RAV1(1)     --------->TOE2(3)<-----------GT1<---------ANAC46  <---------------AtSPL8   aaacaacaacaaagtaagttaaaattcaaacgttgataagaaactatttactttgttagttttggtgtaggaaaaagtaagtggtacaaatagacgtttt  8004800                                            --------------------->WRI1                                           --------->ATHB12                                           <---------ICU4                                   --------->YAB1              --------->TOE2(3)                         <---------YAB1   --------->ICU4       --------->TOE1(3)                       <-----------GT1    <---------YAB1     -------->P              --------->ARR11(3)           <---------TOE2(3)      <------ZmHOX2a(2)        --------->MYB46(3)        <---------ARR11(3)         <---------AHL20(2)    <---------YAB1        <-----------GT1       <-----------HVH21 <-------   gtttttggtttttaatgtttcggtgttaccattacgatcatctcatcattgtaatttacgaacaacctcaatctaatggtcagtgaagatttattgtgat  8004900                                                                        <---------AHL20(2)                                                                       --------->AHL20(1)                                                                       <---------AHL20(1)                                                                       --------->AHL20(2)  --------->ATHB12                                                                       <---------AHL20(2) --------->ICU4                      <---------AHL20(2)      <----------DOF2     <---------ATHB12      -------------                  <----------DOF2             ------>ZmHOX2a(1) --------->WOX13(1)     <-------------               --------->ARR11(3)      --------->MYB52(1)   --------->ANAC58           ==============           <-----------GT1             <---------DOF5.7(2)  --------->ANAC46           -------------- --YAB1 ----------->GT1              --------->DOF5.7(2)    --------->ANAC58      --------->GLK1(2)   agtagtcgaaatgttactatcttttttattcaacatttagttaacgtcctttcgcctactacaagtcaatcaatttaatacaagaatttgccatgtttgg  8005000                                      <---------------AGL15                                      --------------->AGL15                                     <---------ANAC58                   ------->GAMYB     <---------ANAC58                  --------->MYB46(3) ----------------->AGL2                  <---------MYB52(2) <---------ANAC46            --------->O2             ----------------->AGL3            --------->bZIP60(2)      ----------------->AGL1 -->AGL15   --------->ANAC58     <---------ANAC58             <----------DOF2 ----AGL1   --------->ANAC46     <---------ANAC58         <---------PCF2                >>>>>>>>>GATA-1 ======================================================MADS_MADS    ----------->HVH21 ----------->GT1 --->AG     --------->ANAC58  <----------DOF2            ----------->HVH21        <------ZmHOX2a(1)   ctatataagtagccacgacaacaaacttcacactttcttgcctgaaatagaattcacatgggacctttctctgacatttgcataggaatagataaactca  8005100                                     <---------AHL20(2)                                     --------->AHL20(2)                                     --------->ATHB51                                     -------->ATHB1                              <---------AHL20(2)                                    --------->ICU4                               <---------AHL20(1)                             <-----------GT1                         <---------AHL20(2)              <---------ANAC58      <---------ATHB12        --------->ANAC58     --------->AHL20(1)              <---------ANAC58      <---------ATHB51        --------->ANAC58   <---------YAB1              <---------ANAC46 --------->ANAC46            --------->DAG2     --------->AHL20(2)         <-------TEIL    --------->YAB1         ----------->GT1      --------->AHL20(2)   --------->YAB1     ----------->GT1<--------HAHB4       ---------->DOF2   ------->TEIL <---------TOE2(3)   tagaataaaaattcatacgtggattagtaataaacccaattatttactgagggaaaaacaaaaagccatattaaaatgaatattatattctaatgtatta  8005200                                                                 ------->GAMYB                                                                --------->MYB46(3)                                                              ----------->RAV1(1)                                                              --------->MYB52(1)                                                           --------->ANAC58                                           <------MYB46(1) --------->ANAC58                                       --------->ATHB12    --------->ANAC46                                  <<<<<<<<<MYB2          ---------->DOF2           --------->AHL20(2)   <------MYB46(1)        ===================RAV       --------->AHL20(2)       <------MYB83          <---------LBD16       --------->YAB1          <---------AtMYB61  <---------ARR14(2)--------->YAB1    --------->YAB1           <------------CBF     --------->ARR14(2)<---------ICU4  <---------YAB1     <---------YAB1  *TSS  <------MYB83<-----------RAV1(2)                --------->ZAT6   aactattaataaaaaaaattcttttgaatgggattggttttcgattggtccgaaaccccagaagcaacagtcattactctgttttcatatgaacactctt  8005300                                                                                                <----                                                            ==================================HOX2a_HOX2a                                                            ------>ZmHOX2a(2)             ------>ZmHOX2a(1)                                                            =====================================HOX2a_HOX2a                                                           ===================================HOX2a_HOX2a                                                           <------ZmHOX2a(2)             <---------ALFIN1                                                          <---------ARR11(3)    --------->ARR14(2)  -                                                          <---------ARR14(2)    <---------ARR11(1) <-                                                          --------->ARR14(2)    <---------ARR14(2) --                                                 <-------TEIL<----------DOF2    <-----------ARR10 <--                                                --------->ARR14(1)              ------->TEIL   <-----             ----------->RAV1(1)                --------->CCA1(2)               <---------TOE1(2) ---           --------->At4g35610                 <---------ARR14(2)              <---------ARR14(1) ---       --------->ANAC58                        --------->ARR11(1)          <-----------HVH21 ------>ZmHOX2a(1)       --------->ANAC46  --------->YAB1        --------->ARR14(2)         --------->DEAR3(1)<--------       --------->ANAC58--------->ANAC58      ----------->ARR10         <---------ALFIN1------>ZmHOX2a(1)  ------>ZmHOX2a(1)    --------->ANAC58  --------->GLK1(2)--------->ARR11(3)   <---------CCA1(2)-----   catcctcacaagcagcaacaagaacaagcacaacaacaagaagaagctagatacgaatgggatctttctctctccaccgtcgtatcttcctcctcctcct  8005400     ------>NtERF2    --------->DEAR3(1)    ----------->HVH21  ------>NtERF2                                                --------->GLK1(1)  <---------ATERF1(1)                                       <------NtERF2          <-----------GT1 --------->DEAR3(1)                                        --------->LBD16  <-------TEIL -----ATERF1(1)                                            ------>NtERF2   --------->ARR14(1) -------->ATERF1(1)                                       --------->LBD16 --------->ARR11(1) --------ATERF1(1)                                       <---------LBD16  --------->ARR14(2) ---->NtERF2                                            ------>NtERF2 ---------->DOF2 -------ALFIN1                                         --------->DEAR3(1) <---------ARR14(2) ----ALFIN1<---------DOF5.7(2)                         ------->GAMYB--------->ANAC58 <---------RAP2.6(2) ------>ANAC46                                        --------->DEAR3(2)  <---------GLK1(2) ------>DEAR3(1)                      --------->YAB1  --------->MYB46(3) <---------HSFB2a(1) -ALFIN1 --------->DOF5.7(2)   <------ZmHOX2a(2)     <---------ATERF1(1)----------->ARR10          <- ->ZmHOX2a(1)                  --------->PCF2     <---------DEAR3(2)--------->ANAC58<---------At5g28300   ccgcctccgacgttatcggagctattgaattcgatcccactgataacatcgtcgctaccgccgggatttcaagaaagattcgtttttacggcctcccttc  8005500                                                        ----------->RAV1(2)                                                       --------->ABI4(1)                                                       ------>NtERF2                                                      <---------ALFIN1                                                      ------->GAMYB                               <---------HSFC1(2)     --------->DEAR3(1)                               <---------HSFB2a(1)    --------->DREB2C(2)                               --------->HSFC1(2)    --------->ATERF1(1)                               --------->HSFB2a(1)   --------->DEAR4(2)                            --------->LBD16          --------->ORA47(2)                          <---------LBD16            <------NtERF2    --------->ANAC58     --------->SPL7              --------->MYB46(3)    <---------ANAC55(2)  --------->MYB52(1)         <---------ATERF1(1)    --------->ANAC55(2) <---------ARR14(2)          ------>NtERF2    --------->ANAC55(1) --------->ARR14(2)         --------->DEAR3(1)    --------->ANAC46   <---------MYB52(1)         --------->MYB46(3)            <---------DEAR3(1)    --------->ANAC58   <---------SPL7           --------->ANAC58               <---------LBD16    <---------ANAC58  --------->LBD16           --------->ANAC58          --------->ZAT14    <---------ANAC58 --------->ANAC46           --------->ANAC46   <-----------GT1   <---------TOE2(3)<---------LBD16           ---------->DOF2  --------->ARR14(2)--------->LBD16 ---------DOF2  <-----------HVH21            <------ZmHOX2a(2) <---------ARR14(2)------>NtERF2     <-   tcttttacgtaacaacgctgtctccggtaccggagtttccttcgtcgatcaagccaccgcctgcgaatattacatctgtactccggcgaaacttagtagt  8005600                      <-----------HVH21                      <-------GAMYB                     <---------DEAR3(2)                     <---------SPL7                                --------->SPL7                     <---------MYB46(3)                         <---------ANAC58       <------NtERF2               --------->ALFIN1                                <---------------AtSPL8  <---------LBD16              <---------ARR14(2)                               <---------------AtSPL3 ------>NtERF2              <-----------HVH21                           --------->ICU4             <---------DEAR3(1)            --------->LBD16                               <---------ZAT6==================HOX2a_HOX2a          <---------LBD16                              <------NtERF2    ------>ZmHOX2a(2)        ----        --------->ARR14(2)                            <---------ZAT14  ===================HOX2a_HOX2a        <---------ARR14(2)                            --------->ZAT14  <------ZmHOX2a(2)    ---------       <---------GLK1(1)     --------->ATHB12      ------>NtERF2<---------ANAC58    --------->SPL7   --------->ALFIN1 <---------DEAR3(1)            <---------DEAR3(1)  --------->ARR11(3)  <---------MYB52(1) --------->LBD16 <---------SPL7        <------NtERF2<------NtERF2<---------SPL7    <------ZmHOX2a(1) --------LBD16--------->ARR14(2)     --------->ETT(1)<---------ANAC46 <---------ARR11(3) --------->LBD16   ctccggtggagacccgggtcgggcggtcgggttattgggtcgggagattacgacggcgtagtgatggagtacgatcttgagaagaggacgccggtattcg  8005700  Previous    Next  AGI:  At5g23730.1    Description:  nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G52250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17233.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 8005237    to: 8006633    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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