Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                              -------                                                                                        ------>ZmHOX2a(1)                                                                                    ------>ZmHOX2a(2)                                                                                   --------->GLK1(1)                                                                                   <------ZmHOX2a(2)                                                                                   <---------GLK1(1)                         ------>ZmHOX2a(2)                                        --------->ARR14(2)                        <------ZmHOX2a(2)                                         <---------ARR14(3)                       <---------ARR14(2)                                         <---------ARR14(2)                  ------>NtERF2                                                   --------->ARR14(3)                 <---------ANAC58                            <---------ICU4       --------->ARR11(3)                 <---------ANAC58                            --------->YAB1       <---------ARR11(3)                 <---------ANAC46      <---------ZAT2        --------->ATHB12  --------->LBD16<------     <---------YAB1<------NtERF2       --------->ZAT2       --------->ICU4    <---------LBD16 -------    <-----------HVH21  --------->ARR14(2)   <--------P    --------->YAB1     <---------LBD16 -------- ---------GT1 <---------DEAR3(1)      --------->GLK1(2) <---------YAB1     <---------WRKY18(1)<------ --->YAB1     ---------->CDC5<------ZmHOX2a(2)          <---------TOE2(3) ----------->HVH21  <------- ----ICU4   <---------ANAC58<---------ARR14(2)--------->ANAC58          --------->YAB1 --------->TOE1(2) -ICU4      <---------ANAC58--------->ARR14(2)--------->ANAC58       <---------CCA1(2)----------->RAV1(2)   taaccttgtcataggcttggcgcgagatcggatcagagagaagctggtaagcctcgttaagaatgatggccatatcatgaccgggatctcctgcgatatc  7828300                      --------->ANAC58                      --------->ANAC58    <---------bZIP60(1)    --------->bZIP60(1) --------->ARR14(2)                                             ---------->DOF2 ----------->HVH21 --------->TOE1(2)                                            ---------->DOF2 -----LBD16        ------->GAMYB                                            <---------------------WRI1 -->ARR11(3)      <---------MYB52(2)                               --------->ANAC46  <------ZmHOX2a(2) ---ARR11(3)      --------->ANAC58                   --------->ARR14(2)   ----------->GT1         <-- -->ARR14(2)      --------->ANAC58                --------->YAB1   --------->ANAC58 --------->ARR11(3) ->GLK1(1)--------->ARR14(2)           ------>ZmHOX2a(2)           --------->ANAC58 <---------ARR11(3) ---ARR14(2) --------->HSFB2a(2)      <---------At4g35610        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --GLK1(1)<---------ARR14(2)          --------->At4g35610    <------ZmHOX2a(2) --------->ICU4  <-----   tggatgacatcgtttctgcaacgcacgataggctgatttgatctgagacttatcagaacttcgatcaatacccaagaggtcataaagatcaaagtcagtg  7828400                                               --------->MYB52(1)                                              ----------->HVH21                                    <---------ANAC46                                    <---------ANAC58        --------->ICU4              <---------ANAC58        <---------YAB1             --------->ATHB12      --------->YAB1    <---------ALFIN1     ------>ZmHOX2a(2)     --------->ICU4    <---------REM1(2)   <---------ARR11(3)      --------->ARR11(3)               < -------WOX13(1)       --------->ZAT14     --------->ARR11(3)--------->At4g35610          <---------At4g35610 ----ZAT6              <---------ZAT14--------->ALFIN1      --------->GLK1(2)             --------->At4g35610   atagacgatgatgatgaagttgctctacacttgaacttgagtggtgatctaacggtgatgagcttctgagatgttgaacatggccatgtagcagttgatg  7828500                                                             <---------MYB46(3)                                                            --------->ALFIN1            <------NtERF2                                 <------MYB46(1)          <---------DEAR3(1)          <-----------GT1     <------MYB83                         ------         <------NtERF2       <-----------HVH21           <---------AtMYB61                     <-----        <-----------HVH21<---------DEAR3(1)          --------->HSFB2a(2)                      -------   <---------HSFB2a(1)  <---------LBD16       <-----------------AGL1 <---------ZAT14 <---------MYB46(3) ------ZmHOX2a(1)--------->AHL20(2)  <-----------GT1 <---------HSFB2a(2)     <----------ID1   -------   gaggaagagtcgtcggagaaaaaatagccggtgtcatattttccccttctctgttttggaaggtggatgagtttagagagggacaagttgttgaaaatat  7828600                                              <----------ID1                                       --------->AHL20(2)                                       <---------AHL20(2)                                   <---------RVE1(1)                                   <---------CCA1(1)          --------------->AGL15           <------                                  --------->AHL20(1)          <---------------AGL15        --------->AHL20(1)       ------->TEIL               --------->ARR11(3)         ----------------->AGL1        <---------AHL20(2) --->ARR11(3)                     <---------AHL20(1)         ----------------->AGL3        --------->AHL20(2) ----ARR11(3)                     <---------ARR11(3)         ----------------->AG          <---------AHL20(1) -->CCA1(1)         <---------CCA1(2)  <---------AHL20(1)    ----------------->AGL2     --------->AHL20(2) -->RVE1(1)    <-----------GT1  ----------->ARR10      ---------->DOF2                  --------->YAB1   ctctatatgaagctatttttccatctctcttggaaagatattttatttgggacgaataaaagttccaaattgagttatagctaaaatgaataatatttta  7828700                                                ---------->DOF2                                              --------->AHL20(2)                                              --------->YAB1                                         <------NtERF2                                         ------------>CBF                <---------YAB1                                    <---------MYB46(3)                  <-----------GT1                  <---------At4g35610<------MYB83                  <---------ARR11(3)                  --------->At4g35610<------MYB46(1)               --------->ARR11(3)      <---------AHL20(2)            <---------AtMYB61             --------->YAB1     <---------AHL20(2)            <---------WOX13(1)          --------->YAB1     <---------AHL20(1)     --------->DAG2    <---------AHL20(2) <---------YAB1     --------->AHL20(2)    ---------->DOF2 --------->WOX13(1) <---------YAB1                     <---     --------->AHL20(1)    *TSS   <------------CBF    --------------->AtSPL8             ---------->DOF2 ---AHL20(2)   ---------->DOF2   --------->ATHB12     <---------------AtSPL8------>ZmHOX2a(1)    <---   taaaaaataaaatttttgaaagcagacaataaagttgattggtggcaattaaaagagttgtactattatgatattatccttctatacgaatgaaagttta  7828800                                                                                                 ----             <---------ANAC58                                                                    ----             <---------ANAC58                                                                  <-----             ----------->GT1                                                                   ------             <---------ANAC46                                                                  <-----        --------->YAB1         --------->AHL20(2)                                             <------       <------ZmHOX2a(2)    <---------ICU4                                                    -------       <---------YAB1      <---------YAB1                                               --------->MYB59      --------->ARR11(3)   --------->ICU4                                         --------------->AGL15      <-----------ARR10  --------->YAB1                                           <---------------AGL15      <---------ARR11(3)<---------YAB1                                            ===================     <------ZmHOX2a(1) --------->ARR11(3)              --------->YAB1            <-----------------AGL1   <---------TOE2(3)   <---------ARR11(3)           --------->YAB1 --------->AHL20(2)   <---------TOE1(3) ------TOE2(3)        --------->CCA1(1)           <---------AHL20(2)             --------->ANAC55(2) ------TOE1(3)        --------->RVE1(1)           --------->AHL20(2)    ---------->DOF2 <---------TOE2(3)   aggctgaggatcatagcgtaaaaaatatcataatgaattatcgaaatgttgttttaataagaaaaaccaaaaaataaagtcttacatatttaggttacct  7828900                                      <---------ALFIN1                                     <---------ZAT14       <----------DOF2               <---------REM1(2)                                     <---------AHL20(2)      <---------ANAC58       <------ZmHOX2a(2)                                             --------->AHL20(1)      <---------ANAC58       --------->CCA1(2)                                             --------->AHL20(2) -->MYB46(1)                <---------ARR14(2)                          --------------->AGL15 -->MYB83                   --------->ARR14(2)                          <---------------AGL15 ----MYB59                  <---------ARR11(3)                 <----------DOF2<---------TOE1(3) --->TOE2(3)                --------->ARR11(3)          <-----------GT1 ============================= ----MYB46(2)               --------->AGP1      ------->TEIL  <---------ICU4  <---------TOE2(3)------ ---ANAC55(2)           ---------->DOF2        <---------CCA1(2)       <-----------------AGL1  ------ -->ANAC55(2)       <----------DOF2--------->ZAT14 <----------DOF2  <----------DOF2       --------->AHL20(2) =======================================================================================MADS_MADS ---   aatttttggcttttggtttggactttaaaagatccagtctacacttgttgtatctttcttacaatcttttctttcattttcaggtaaaccaaaaaaatta  7829000            ----------------->AGL2     --------->KAN4(2)    <---------HSFB2a(1)    --------->HSFB2a(1)    <---------HSFC1(2)             --------->YAB1    --------->HSFC1(2)           <---------AHL20(2)   <---------ARR14(2)            --------->AHL20(1)   --------->ARR14(2)           --------->YAB1   --------->ARR11(3)       <---------AHL20(1)   <-----------ARR10        --------->AHL20(2)   <---------ARR11(3)       --------->AHL20(1)   --------->GLK1(2)        <---------AHL20(2)  <---------GLK1(2)        <---------AHL20(2) ============================MADS_MADS           --------->ANAC46                          --------->ICU4 --->YAB1 <---------ALFIN1 --------->AHL20(2)    --------->ANAC58                   ----------->GT1 --->AHL20(2)      --------->YAB1--------->AHL20(2)          ----------->GT1     <------ZmHOX2a(1) ------->DOF2--------------->AGL15<---------YAB1 --------->ANAC58      <-----------GT1  <---------YAB1   taaagaatcttcccaccctaatcagaaaaataaattataatatcaattttcaagaaatcaaacttgtaaaatttttctacttaggagagtataattttga  7829100                                                  <---------------AGL15                                             ------->GAMYB                                             --------->AtMYB61                                        <---------MYB111(1)                                        <---------MYB52(2)                                        <---------MYB59                                      <-----------GT1                                   ----------->GT1--------------->AGL15                                   --------->ANAC55(2)                                   <---------ANAC55(2)     <---------ARR11(3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 --------->AHL20(2)        --------->ARR14(2)                                 <---------AHL20(2)        --------->ARR11(3)                              --------->YAB1--------->MYB46(3)      <---------AHL20(2)                             <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            --------->AHL20(2)    ----------->RAV1(1)                            --------->AHL20(1)   ----------------->AGL3                             -                            <---------AHL20(2) ------>MYB46(1)      <---------YAB1         --------->YAB1                            <---------AHL20(1) ------>MYB83<---------ARR14(2)           <---------ICU4                           --------->YAB1  -------->P  ---------->DOF2                  --------->YAB1                       --------->AHL20(1) <-----------GT1  --------->ARR11(1)           -------->HAHB4                       <---------AHL20(2) --------->MYB52(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->ICU4                      --------->AHL20(2)<---------MYB46(2) <---------GLK1(2)           <---------ATHB51           <---------AHL20(2)--------->ICU4<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->YAB1 <   gaaatttgagtttttaatctacaaaaaaattataattaagtaactaaccatcccacaaaaagatactgatattatttgtattttctgtaataatgacaat  7829200  Previous    Next  AGI:  At5g23235.1    Description:  pseudogene, antisense mRNA to genes At5g23230 and At5g23240, blastp match of 34% identity and 7.4e-17 P-value to OMNI|TM0133 isochorismatase-related protein {Thermotoga maritima MSB8} Range:  from: 7826031    to: 7828727    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g23240.1    Description:  DNAJ heat shock N-terminal domain-containing protein. similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G42750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44422.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); contains InterPro domain 4Fe-4S ferredoxin, iron-sulphur binding; (InterPro:IPR001450) Range:  from: 7826735    to: 7828727    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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