Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             --------          ----------->RAV1(2)                                      <---------ZAT2          <---------At4g35610          <---------At4g35610                                      --------->ZAT2          --------->At4g35610          --------->At4g35610                                     --------->ANAC58       --------->HSFB2a(2)        --------->YAB1                  ---------->DOF2           --------->ANAC58       <---------HSFB2a(2)       <---------ATHB12               <------ZmHOX2a(2)           --------->ANAC46   <---------WOX13(1) -At4g35610                          --------->ARR11(3)     <---------ANAC58      <---------YAB1 >At4g35610       --------->AHL20(2) <---------ARR11(3)     <---------ANAC58      <---------TOE2(3)   aattatctaatcatctgcaactaaatagacgaactagaagatcaaagaaaaactcacctcttgcttccaagcagggagagttctaagattgccagaagcc  7748800                                                                              --------->At4g35610                                                                     --------->HSFB2a(1)                                                                --------->ANAC58                                                                --------->ANAC55(1)                     <---------ANAC58                           --------->ANAC46    >>>>>>>>>>>>>>>>>LFY                     <---------ANAC58                           --------->ANAC58----------->HVH21                   --------->LBD16                       --------->AtLEC2     ----------->RAV1(2)                   ------>NtERF2                   <---------SPL7    <---------HSFB2a(1)          <--        <----------DOF2                           <---------ANAC58  <---------ARR11(3)            --- ->ANAC58        <---------LBD16          <----------DOF2--------->ANAC46  ------>ZmHOX2a(1)      --- ->ANAC58    <<<<<<<<<TBF1       <<<<<<<<<TBF1    <---------ANAC58  --------->ARR11(3)           ----   ccagcgactgctttcttcttccggcttgcgatttcttcttcgcgctctattggcgttccatgaaacacgaaatcttcctcgtctgaccccattgtcttca  7748900                                                                                           --------->ARR11(3)                                                                                           <---------ARR11(3)                               <---------ARR14(2)                                          <---------ARR14(2)                               --------->ARR14(2)                                          --------->ARR14(2)                    --------->RAP2.6(2)                                                   <---------GLK1(1)                  <---------At4g35610                                                     --------->GLK1(1)             <------ZmHOX2a(1) <---------GLK1(2)                                          --------->RVE1(1) -------ALFIN1    --------->ZAT2--------->GLK1(2)          >>>>>>>>>TBF1                 <---------ARR11(3) ------>DEAR3(1)  --------->At4g35610                   >>>>>>>>>TBF1         --------->ICU4 ------>AtMYB61  ----------->RAV1(1)           --------->LBD16  --------->At4g35610      --------->ARR11(3) ----->MYB46(3)--------->At4g35610  *TSS      <---------HSFB2a(2)    --------->GLK1(2)<------ZmHOX2a(1)   ccaccgagaccgagaggagcagcagcaattcgagattctgaacgagtcccagagagaagaagaagaagcagaatcagagaattatggaggagatatctgg  7749000                                                                                   <-----------ARR10                                                                                --------->RAP2.3(3)                                                                               --------->RAP2.3(1)                                                                               --------->ORA47(2)                                                                               --------->DEAR4(2)                                                                               <------NtERF2                                                                               --------->ATERF1(1)                                                                              <---------ATERF1(1)                                                                              ------>NtERF2                                                                           --------->ANAC58                                                                           --------->ANAC46                                                               <---------TOE2(3)--------->RAP2.3(2)                        <---------MYB52(1)                     <---------TOE1(3)--------->DEAR3(1)                   ---------->ID1                             ---------->DOF2--------->ANAC46                   ------>NtERF2                              <---------DOF5.7(2)------>NtERF2                --------->RAP2.6(3)                     <------ZmHOX2a(1)  --------->ANAC58             <----------DOF2                          <---------TOE2(3) <---------REM1(2)         --------->GLK1(1)                        <----------DOF2   --------->ARR11(3)           ----   gcctggttcgggtctcttttcggcccattagttttgttttaaaatccaattgctataaggaagttaaagttatcttcacgcgccgtctctaagcgttgta  7749100                                                                                                 >>>>                                                                                                 >>>>                                                                                                 >>>>                                                                                                 ----                                                                                               ------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             --------                                <---------MYB52(1)                                         <---------                              <---------ANAC58                                             ----------                       <---------ANAC58                                                 <---------AHL20(2)                       <---------ANAC58                                                 --------->AHL20(1)              <XXXXXXXXXXXXXXXXXXXXMIR164A/B                                <---------ARR14(2)<------              --------->ANAC46<---------ANAC58                         ----------->GT1  <---------AHL20(1) ---------->DOF2   <----------DOF2                                   ----------->GT1   --------->YAB1 ------>DOF2<-----------GT1   <---------ANAC46              *TSS  <------ZmHOX2a(1)    --------->AHL20(2)   aaagaaagtgtgattcacgcgctttgcttcttccgtttgccctaaacgactctgctagagaagacgaaggagagagaaaatccctccgattatattccgt  7749200                          ------>ZmHOX2a(2)                         --------->GLK1(1)                         <------ZmHOX2a(2)                        <---------ARR11(3)                        --------->AGP1                        --------->ARR14(2)                        --------->ARR11(3)                        <---------AGP1                        <-----------ARR10                        <---------ARR14(2)                    <------NtERF2                    --------->ATERF1(1)                   ------>NtERF2                   ----------->RAV1(1)                  --------->RAP2.3(3)                  --------->RAP2.3(2)                  --------->DEAR3(1)                 --------->ATERF1(1)                 <------NtERF2 >>>>>SPL1       --------->RAP2.6(1) >>>>>SPL5       --------->RRTF1(1) >>>>>SPL4       --------->RAP2.3(1)                       <---------ANAC46 ----->SPL7      --------->ERF1                            <---------ANAC58 --->LBD16      ------>NtERF2     ------>NtERF2            <---------ANAC58 ---ANAC46      --------->LBD16 --------->LBD16           <-------TEIL       --------->At5g28300 ---ANAC58      <---------ATERF1(1)                    <------MYB46(1)     <---------ANAC46 ---ANAC55(2) <---------LBD16<---------At5g28300       <------MYB83       <---------At5g28300 ------->AtSPL3--------->ANAC46--------->DEAR3(1)  --------->ARR14(2)   <---------MYB52(1) --GT1<------ZmHOX2a(2)<---------CCA1(2)           <---------ARR14(2)   <---------ARR14(2)   <------- -------->SPL14--------->LBD16 --------->ANAC46 ----------------->AGL1  --------->ARR14(2)--------->ZAT6 ---ANAC58<---------GLK1(1)----------->HVH21 <----------DOF2    --------->WRKY38(1)     <---------ARR11(3)   acaatccgatcgatttcccggcgccagatctcaccgcgactcgtctactttccgatttggttcgtgttgactcagttacggtgagtcgattatctctatc  7749300                                                      --------->ANAC58                                                      --------->ANAC46                                              <---------ANAC46                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         --------->ARR14(3)                                         <---------ARR14(3)                                         <---------ARR11(3)               ------>ZmHOX2a(2)         --------->ARR11(3)              <---------GLK1(1)          --------->AGP1              --------->GLK1(1)          <---------AGP1              <------ZmHOX2a(2)          <---------ARR14(2)                                         <             <---------ARR14(2)          --------->ARR14(2)      ----------->RAV1(2)            -----             --------->ARR14(2)          <-----------ARR10     <-----------GT1                 <-----         <-----------GT1                <---------CCA1(2)   <----------DOF2                   -------        <-----------GT1--------->ATHB12----------->ARR10 ------->TEIL                         ------- --CCA1(2)   <-----------ARR10  <----------DOF2       --------->ANAC58   <---------GLK1(1)    <------   ttctcgtttttttccgatctccccttgatttgctctttatgcagatcttcgtgtacaagcacctttaacctgatgaattctgtagattaaactatggatc  7749400                             --------->HSFC1(2)                     --------->ANAC58                                  <---------AHL20(2)                     --------->ANAC58                                 --------->AHL20(2)                     --------->ANAC46               <---------YAB1  --------->TOE2(3) ---------ATHB12   --------->TOE1(2)          <--------P           <--------HAHB4            ------>MYB83 ->ZmHOX2a(2)   --------->ARR14(2)         --------->DAG2          <---------ICU4            ------>MYB46(1) -ZmHOX2a(2)    <---------ARR14(2)       ---------->DOF2          <---------YAB1 --------->ARR14(2) >TEIL   <---------------------WRI1    --------->HSFB2a(2)    <---------WOX13(1) <---------ARR14(2) -->ARR14(2)   --------->GLK1(1)       <---------HSFB2a(2)  --------->ATHB12 <------ZmHOX2a(1) ---ARR14(2)<------NtERF2    <---------HSFC1(2)   <---------ZAT6--------->YAB1  <------ZmHOX2a(1)   caatggatatagtcggcaaatccaaggaagacgcttctcttccaaaaggttagtgttattgctcattgatcattaaataggaggatttgtaaacctagct  7749500                                                          <---------ARR11(3)                            --------->YAB1                --------->ARR11(3)    ---------->ID1               <---------TOE2(3)     --------->YAB1  <---------AHL20(2)       <-----------RAV1(1)               <---------TOE1(3)    <---------YAB1   <---------YAB1<---------TOE2(3)           <----------DOF2 <-------TEIL           <---------AHL20(2)     <XXXXXXXXXXXXXXXXXXXXMIR863-3P   <-----------GT1      <------ZmHOX2a(1)         --------->AHL20(2)  --------->GLK1(2)           <--   atatataactctgcttgaaggttataggattcatgagcatcataaacttcatttttttattatcttgctaagaatatgttttgttgttctctattgtttt  7749600                                                                       <---------YAB1                                                                   ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                 <---------ARR14(3)                                                                 <-----------ARR10             <-----                                          <-------TEIL           --------->AGP1               <------                         --------->ARR11(3)<---------ANAC58      --------->ARR11(3)           -------                         <---------ARR11(3)<---------ANAC58      --------->ARR14(3)     <------MYB83                  ---------->DOF2     <---------ARR11(3)         --------->ARR14(2)     <------MYB46(1)               --------->AHL20(2)----------->RAV1(1)             <---------ARR14(2)    --------->MYB59               --------->YAB1<-----------GT1 <-----------RAV1(1) <---------ARR11(3) <---------ANAC46 -------At4g35610<---------YAB1--------->MYB46(3)      --------->CCA1(2)          <---------ANAC46   agctacgatgactaaaattataaaggagatgttaccaccagatgttcgtgttgcaagagatgctcaagatcttctcattgaatgttgtgtaggtaagatc  7749700  Previous    Next  AGI:  At5g23080.1    Description:  TGH (TOUGH); RNA binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO67984.1); similar to Os06g0489200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057672.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain Protein of unknown function DUF1604 (InterPro:IPR011666) Range:  from: 7742943    to: 7748936    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g23090.1    Description:  TATA-binding protein-associated phosphoprotein Dr1 protein, putative (DR1). Identical to Dr1 protein homolog (DR1) [Arabidopsis Thaliana] (GB:P49592); similar to TATA-binding protein-associated phosphoprotein Dr1 protein, putative [Arabidopsis thaliana] (TAIR:AT5G08190.1); similar to repressor protein [Glycine max] (GB:AAL73489.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 7749160    to: 7750391    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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