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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                <------NtERF2
                                                               <---------ATERF1(1)
                                                               ------>NtERF2
                                                              --------->ATERF1(2)
                                                              --------->RAP2.3(2)
                                                              --------->RAP2.6(2)
                                                              --------->RRTF1(3)
                                                              --------->DREB2C(2)
                                               <-----------GT1--------->RAP2.3(3)
                                           <---------MYB52(1) <---------ATERF1(2)
                                          <-------GAMYB       --------->RRTF1(2)
         ------>ZmHOX2a(1)               <---------MYB46(3)   --------->ANAC46       <---------ATERF1(1)
      ------>ZmHOX2a(1)               --------->DEAR3(1)      --------->DEAR3(1)     ------>NtERF2
     <---------ALFIN1              <---------ALFIN1          --------->RAP2.3(1)     --------->LBD16
   ------>ZmHOX2a(1)               --------->DEAR3(1)        --------->ERF1         <---------RAP2.6(2)
  <---------ALFIN1                 --------->AtMYB61         --------->ORA47(2)    <---------LBD16<-
-------->AtMYB61                  <---------MYB55(2)        <---------ATERF1(1)  <---------ARR14(2)
---------ALFIN1                   --------->MYB46(3)       --------->DEAR3(1)    --------->ARR14(2)
------ALFIN1                    --------->ANAC46       <---------YAB1     --------->YAB1------>NtERF2
 
cacctcctcctcctccgtctccattaccaccatttccaccaccgtcgttgttcccattctcatcgccgccatcaccatcatcaagttccggctccaaatc  7601300
                                                                    ------->GAMYB
                                                                   --------->MYB46(3)
                                                              --------->ANAC55(1)
                                                              --------->ANAC58
                                                              --------->ANAC55(2)
                                                              <---------ANAC55(2)
                                                              --------->ANAC46
                                                     <---------RVE1(1)
                                                <---------LBD16--------->LBD16
                                               -------->P     --------->ANAC58
                        ---------->DOF2        --------->MYB52(1)--------->ARR14(2)       --------->ARR14(2)
                --------->ANAC58    --------->LBD16  <---------CCA1(1)            <---------ALFIN1
                --------->ANAC58  <---------LBD16   --------->ARR14(2)          ------>ZmHOX2a(1)
           <----------DOF2  ----------------->AGL1  <---------ARR14(2)       <------ZmHOX2a(2)
   ----------------------->TaNAC69(2)<---------MYB52(1)   <-----------GT1   --------->ARR14(2)
---------->DOF2 --------->ANAC46<---------ARR14(2)  <---------ARR11(3)      <---------ARR14(2)
---------DOF2 <-----------GT1   --------->ARR14(2)--------->LBD16<---------ARR14(2) --------->ANAC46
 
gcttaaagtctcatcttttacgccactataagcccaatccggtatcgatctaccggatatttcacccgtaaccacatccgatcctacacatcggtttctc  7601400
                               ------>ZmHOX2a(2)                   --------->MYB52(1)
                              <------ZmHOX2a(2)            --------->ANAC58
                             <---------ARR14(2)            --------->ANAC46
                             ------->TEIL                  --------->ANAC58              --------->WRKY38(1)
   --------->LBD16           --------->ARR14(2)           <---------LBD16                --------->WRKY12
   <---------HSFB2a(2)--------->AHL20(2)     --------->ANAC46    <---------MYB52(2)   --------->TOE2(3)
   --------->HSFB2a(2)<---------AHL20(2) <-------TEIL <----------DOF2    <------ZmHOX2a(2)
 
aaattccgagaagacaagtccgaatttaaatggatccgtctagattcaacaccagggcttctacggaaacaaaccgatctaatttcaaacctttgactca  7601500
           --------->ZAT6
       <----------DOF2                                                                        ------
      <---------ANAC58                                                                      <-------
      <---------ANAC58                                                                      --------
 <---------AtLEC2                                    --------->ICU4               <---------ANAC58
<---------ZAT14           --------->ATHB12     ----------->GT1                    <---------ANAC58
--------->ZAT14     ------->TEIL              --------->ALFIN1                   <---------TOE1(2)
 
ctctgcattgctttacactattgaacccatcgttggagaaacttgaaatgtgggaaatttttagggaaatagacatttgcctcttgggtttctatgatct  7601600
                                                                                 ------->TEIL
                                                                              <---------ANAC46
                                                                              <---------YAB1
                                                                              <---------ANAC55(2)
                      ----------->GT1                                 <---------ANAC46
        <------ZmHOX2a(2)                                           --------->MYB52(1)
       --------->ARR11(3)                                          ----------->HVH21
       <---------ARR11(3)  ---------->DOF2                         ----------->TGA1     <---------ANAC58
>ZmHOX2a(2)         <---------GLK1(2)                   ---------->DOF2      --------->MYB59*TSS
--ARR11(3)         <---------At4g35610    <---------HSFB2a(2)    --------->At4g35610    <---------ANAC58
->ARR11(3)       <-----------RAV1(2)      --------->HSFB2a(2)    <---------At4g35610 ------->TEIL  <
 
gtggatagaagatcaaatacccagatgcttaaaagcttcaaatgtctggaattttggagtaaagacgaagatgacggagttatgtatgtatgcgtttgat  7601700
                                                           <------ZmHOX2a(1)
                                                    --------->TOE1(2)
                                                    ------->GAMYB
                                                   --------->MYB46(3)
                                                   <---------ATHB12
                                                   <---------MYB55(2)
                                                  -------->P                   --------->ARR14(2)
                                                  ------>MYB83                 <---------ARR14(2)
        <---------TOE1(3)                       --------->AtMYB61          ------->TEIL
        <---------TOE2(3)                       --------->MYB46(3)     <---------------AtSPL8
    <----------DOF2                             <---------MYB111(2)    <---------------AtSPL3
  <------MYB46(1)                --------->TOE2(3)------>MYB46(1)     --------->YAB1
  <------MYB83          <---------ALFIN1        <---------MYB55(2)    <---------ICU4
  <---------ANAC46     --------->ZAT14          <---------MYB111(1)--------->YAB1          ---------
 --------->MYB59       <---------ZAT14         --------->MYB46(3) --------->KAN4(1)  <---------ETT(2)
---------MYB52(1)    --------->ANAC46      --------->ATERF1(1)   <---------KAN4(2)   --------->ETT(2)
 
cagttgggtttaagggttttgaacacaacactcttaccttgatggagacgaccaaccaaggaggagagaataatcatgtacggttctgtctacagaaagt  7601800
                   <---------MYB46(3)
                 <---------WOX13(1)
               --------->ATHB51
               --------->ATHB12
              <---------YAB1
            --------->ANAC58                                                           <---------ANAC46
            --------->ANAC58                                                           ----------->GT1
         <------NtERF2                                                          <---------------AGL15
         --------->ATERF1(1)                                                   ----------------->AG
        <<<<<<<<<AtERF-4                                                       ----------------->AGL1
        <<<<<<<<<AtERF-3                                                       ----------------->AGL2
        <---------ORA47(2)                                                     <-----------------AGL1
        <---------ERF1                                                        ----------------->AGL1
        ------>NtERF2                                                        <------NtERF2
        <---------RAP2.3(1)                                                 ------>NtERF2   --------
       --------->bZIP60(1)                                                  <---------ATERF1(1)
       --------->ATERF1(2)                                                 <---------RAP2.6(2)   <--
       <---------ATERF1(2)                                                 <---------ATERF1(2)   <--
       <---------RAP2.6(2)                         --------->ARR11(3)      --------->ATERF1(2)   ---
       <---------RAP2.3(2)                         <---------ARR11(3)      --------->DEAR3(1)    ---
       <---------RRTF1(3)                 ---------->DOF2                  --------->RAP2.6(2)   <--
       <---------RAP2.3(3)         <---------MYB52(1)                     --------->DEAR3(2)--------
       <---------DEAR3(1)      <-------TEIL--------->DAG2                 --------->ATERF1(1)   ----
->DOF2--------->RAP2.6(3)     --------->GLK1(2)    <-----------ARR10    <---------ARR14(2)----------
 
ttagcaaatggcggcacataattggttgaaaagattcagttagacaaaagtgaagctcttctcattttttgttcagagccggcccaaatggggtaaagcc  7601900
                                                                              ------>ZmHOX2a(2)
                                                                            --------->ARR11(3)
                             <---------MYB52(1)               <---------RVE1(1)
                     ----------->RAV1(1)                      <---------CCA1(1)
->ANAC58           <------NtERF2                             --------->ARR11(3)
----NtERF2         --------->MYB46(3)                        <---------ARR11(3)
-------At4g35610  --------->ANAC46                  <------ZmHOX2a(1)       <---------ARR11(3)
------>At4g35610  ------>NtERF2  <----------DOF2    =================================HOX2a_HOX2a
------>ZAT2       --------->ANAC58                <---------TOE1(3)     <---------At4g35610
-------ZAT2       --------->ANAC58<XXXXXXXXXXXXXXXXXXXXMIR851-3P       --------->ARR14(2)
->ANAC58         --------->DEAR3(1)               <---------TOE2(3)    ------->TEIL
------->RAV1(1)  --------->RAP2.3(3)          <---------At4g35610      <---------ARR14(2)
>DOF2     ---------->DOF2 <-------TEIL        --------->At4g35610     <---------CCA1(2)
 
agcagaagtaccaaaaatcgcccccaacattcgtttctttttgtttgtcatctaaggattgtgagatatttctgtatctgatcttcagagtcagttttct  7602000
                                                                          <---------ANAC58
                                                                   <----------DOF2
                                                                  <---------ANAC58                 -
                                                                  <---------ANAC58                 -
                                                            <---------ARR14(2)          <---------HSFB2a(2)
                                                            --------->ARR14(2)          --------->HSFB2a(2)
                                  <----------DOF2           --------->GLK1(2) <---------ANAC46     <
              <-----------GT1     <---------DAG2            ------->TEIL  <---------ANAC58    ------
 
ccacaagatgatgaaataaactctatggttctaatccctttttctaagtgtttgatataggtgaatcttgctttaatccttgtgtatttttctggcagtg  7602100
                  <---------ZAT2
      --------->At4g35610
      <---------ANAC46
     <---------TOE2(3)
    --------->ZAT14
    <---------ZAT14                                               --------->AHL20(2)
 --------->At4g35610                                              <---------ICU4  <---------GLK1(1)
 <---------At4g35610----------->HVH21                             <---------AHL20(2)
-------->ZAT14    --------->At4g35610                      <------MYB83          ------->TEIL
-------->ZAT18    --------->ZAT2                           <------MYB46(1)  <------ZmHOX2a(1)
---------ZAT14    <---------At4g35610           ---------->DOF2  --------->AHL20(2)      <----------TaMYB80
--->ALFIN1     ---------->DOF2    ----------->GT1        <--------P       <---------TOE2(3)
 
tgtccactgaggtgaagtcaaagctgacgagctcatgaagtcaaaacttcagaaagaatggtaggctaattaatactgaggatggatgtctgatattcca  7602200
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AGI:  At5g22790.1   
Description:  RER1 (RETICULATA-RELATED 1). similar to LCD1 (LOWER CELL DENSITY 1) [Arabidopsis thaliana] (TAIR:AT2G37860.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO15721.1)
Range:  from: 7599149    to: 7601693    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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