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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
NtERF2
<---------
ATERF1(1)
------>
NtERF2
--------->
ATERF1(2)
--------->
RAP2.3(2)
--------->
RAP2.6(2)
--------->
RRTF1(3)
--------->
DREB2C(2)
<-----------
GT1
--------->
RAP2.3(3)
<---------
MYB52(1)
<---------
ATERF1(2)
<-------
GAMYB
--------->
RRTF1(2)
------>
ZmHOX2a(1)
<---------
MYB46(3)
--------->
ANAC46
<---------
ATERF1(1)
------>
ZmHOX2a(1)
--------->
DEAR3(1)
--------->
DEAR3(1)
------>
NtERF2
<---------
ALFIN1
<---------
ALFIN1
--------->
RAP2.3(1)
--------->
LBD16
------>
ZmHOX2a(1)
--------->
DEAR3(1)
--------->
ERF1
<---------
RAP2.6(2)
<---------
ALFIN1
--------->
AtMYB61
--------->
ORA47(2)
<---------
LBD16
<-
-------->
AtMYB61
<---------
MYB55(2)
<---------
ATERF1(1)
<---------
ARR14(2)
---------
ALFIN1
--------->
MYB46(3)
--------->
DEAR3(1)
--------->
ARR14(2)
------
ALFIN1
--------->
ANAC46
<---------
YAB1
--------->
YAB1
------>
NtERF2
cacctcctcctcctccgtctccattaccaccatttccaccaccgtcgttgttcccattctcatcgccgccatcaccatcatcaagttccggctccaaatc
7601300
------->
GAMYB
--------->
MYB46(3)
--------->
ANAC55(1)
--------->
ANAC58
--------->
ANAC55(2)
<---------
ANAC55(2)
--------->
ANAC46
<---------
RVE1(1)
<---------
LBD16
--------->
LBD16
-------->
P
--------->
ANAC58
---------->
DOF2
--------->
MYB52(1)
--------->
ARR14(2)
--------->
ARR14(2)
--------->
ANAC58
--------->
LBD16
<---------
CCA1(1)
<---------
ALFIN1
--------->
ANAC58
<---------
LBD16
--------->
ARR14(2)
------>
ZmHOX2a(1)
<----------
DOF2
----------------->
AGL1
<---------
ARR14(2)
<------
ZmHOX2a(2)
----------------------->
TaNAC69(2)
<---------
MYB52(1)
<-----------
GT1
--------->
ARR14(2)
---------->
DOF2
--------->
ANAC46
<---------
ARR14(2)
<---------
ARR11(3)
<---------
ARR14(2)
---------
DOF2
<-----------
GT1
--------->
ARR14(2)
--------->
LBD16
<---------
ARR14(2)
--------->
ANAC46
gcttaaagtctcatcttttacgccactataagcccaatccggtatcgatctaccggatatttcacccgtaaccacatccgatcctacacatcggtttctc
7601400
------>
ZmHOX2a(2)
--------->
MYB52(1)
<------
ZmHOX2a(2)
--------->
ANAC58
<---------
ARR14(2)
--------->
ANAC46
------->
TEIL
--------->
ANAC58
--------->
WRKY38(1)
--------->
LBD16
--------->
ARR14(2)
<---------
LBD16
--------->
WRKY12
<---------
HSFB2a(2)
--------->
AHL20(2)
--------->
ANAC46
<---------
MYB52(2)
--------->
TOE2(3)
--------->
HSFB2a(2)
<---------
AHL20(2)
<-------
TEIL
<----------
DOF2
<------
ZmHOX2a(2)
aaattccgagaagacaagtccgaatttaaatggatccgtctagattcaacaccagggcttctacggaaacaaaccgatctaatttcaaacctttgactca
7601500
--------->
ZAT6
<----------
DOF2
------
<---------
ANAC58
<-------
<---------
ANAC58
--------
<---------
AtLEC2
--------->
ICU4
<---------
ANAC58
<---------
ZAT14
--------->
ATHB12
----------->
GT1
<---------
ANAC58
--------->
ZAT14
------->
TEIL
--------->
ALFIN1
<---------
TOE1(2)
ctctgcattgctttacactattgaacccatcgttggagaaacttgaaatgtgggaaatttttagggaaatagacat
ttgcctcttgggtttctatgatct
7601600
------->
TEIL
<---------
ANAC46
<---------
YAB1
<---------
ANAC55(2)
----------->
GT1
<---------
ANAC46
<------
ZmHOX2a(2)
--------->
MYB52(1)
--------->
ARR11(3)
----------->
HVH21
<---------
ARR11(3)
---------->
DOF2
----------->
TGA1
<---------
ANAC58
>
ZmHOX2a(2)
<---------
GLK1(2)
---------->
DOF2
--------->
MYB59
*
TSS
--
ARR11(3)
<---------
At4g35610
<---------
HSFB2a(2)
--------->
At4g35610
<---------
ANAC58
->
ARR11(3)
<-----------
RAV1(2)
--------->
HSFB2a(2)
<---------
At4g35610
------->
TEIL
<
gtggatagaagatcaaatacccagatgcttaaaagcttcaaatgtctggaattttggagtaaagacgaagatgacggagttatgtatgtatgc
gtttgat
7601700
<------
ZmHOX2a(1)
--------->
TOE1(2)
------->
GAMYB
--------->
MYB46(3)
<---------
ATHB12
<---------
MYB55(2)
-------->
P
--------->
ARR14(2)
------>
MYB83
<---------
ARR14(2)
<---------
TOE1(3)
--------->
AtMYB61
------->
TEIL
<---------
TOE2(3)
--------->
MYB46(3)
<---------------
AtSPL8
<----------
DOF2
<---------
MYB111(2)
<---------------
AtSPL3
<------
MYB46(1)
--------->
TOE2(3)
------>
MYB46(1)
--------->
YAB1
<------
MYB83
<---------
ALFIN1
<---------
MYB55(2)
<---------
ICU4
<---------
ANAC46
--------->
ZAT14
<---------
MYB111(1)
--------->
YAB1
---------
--------->
MYB59
<---------
ZAT14
--------->
MYB46(3)
--------->
KAN4(1)
<---------
ETT(2)
---------
MYB52(1)
--------->
ANAC46
--------->
ATERF1(1)
<---------
KAN4(2)
--------->
ETT(2)
cagttgggtttaagggttttgaacacaacactcttaccttgatggagacgaccaaccaaggaggagagaataatcatgtacggttctgtctacagaaagt
7601800
<---------
MYB46(3)
<---------
WOX13(1)
--------->
ATHB51
--------->
ATHB12
<---------
YAB1
--------->
ANAC58
<---------
ANAC46
--------->
ANAC58
----------->
GT1
<------
NtERF2
<---------------
AGL15
--------->
ATERF1(1)
----------------->
AG
<<<<<<<<<
AtERF-4
----------------->
AGL1
<<<<<<<<<
AtERF-3
----------------->
AGL2
<---------
ORA47(2)
<-----------------
AGL1
<---------
ERF1
----------------->
AGL1
------>
NtERF2
<------
NtERF2
<---------
RAP2.3(1)
------>
NtERF2
--------
--------->
bZIP60(1)
<---------
ATERF1(1)
--------->
ATERF1(2)
<---------
RAP2.6(2)
<--
<---------
ATERF1(2)
<---------
ATERF1(2)
<--
<---------
RAP2.6(2)
--------->
ARR11(3)
--------->
ATERF1(2)
---
<---------
RAP2.3(2)
<---------
ARR11(3)
--------->
DEAR3(1)
---
<---------
RRTF1(3)
---------->
DOF2
--------->
RAP2.6(2)
<--
<---------
RAP2.3(3)
<---------
MYB52(1)
--------->
DEAR3(2)
--------
<---------
DEAR3(1)
<-------
TEIL
--------->
DAG2
--------->
ATERF1(1)
----
->
DOF2
--------->
RAP2.6(3)
--------->
GLK1(2)
<-----------
ARR10
<---------
ARR14(2)
----------
ttagcaaatggcggcacataattggttgaaaagattcagttagacaaaagtgaagctcttctcattttttgttcagagccggcccaaatggggtaaagcc
7601900
------>
ZmHOX2a(2)
--------->
ARR11(3)
<---------
MYB52(1)
<---------
RVE1(1)
----------->
RAV1(1)
<---------
CCA1(1)
->
ANAC58
<------
NtERF2
--------->
ARR11(3)
----
NtERF2
--------->
MYB46(3)
<---------
ARR11(3)
-------
At4g35610
--------->
ANAC46
<------
ZmHOX2a(1)
<---------
ARR11(3)
------>
At4g35610
------>
NtERF2
<----------
DOF2
=================================
HOX2a_HOX2a
------>
ZAT2
--------->
ANAC58
<---------
TOE1(3)
<---------
At4g35610
-------
ZAT2
--------->
ANAC58
<XXXXXXXXXXXXXXXXXXXX
MIR851-3P
--------->
ARR14(2)
->
ANAC58
--------->
DEAR3(1)
<---------
TOE2(3)
------->
TEIL
------->
RAV1(1)
--------->
RAP2.3(3)
<---------
At4g35610
<---------
ARR14(2)
>
DOF2
---------->
DOF2
<-------
TEIL
--------->
At4g35610
<---------
CCA1(2)
agcagaagtaccaaaaatcgcccccaacattcgtttctttttgtttgtcatctaaggattgtgagatatttctgtatctgatcttcagagtcagttttct
7602000
<---------
ANAC58
<----------
DOF2
<---------
ANAC58
-
<---------
ANAC58
-
<---------
ARR14(2)
<---------
HSFB2a(2)
--------->
ARR14(2)
--------->
HSFB2a(2)
<----------
DOF2
--------->
GLK1(2)
<---------
ANAC46
<
<-----------
GT1
<---------
DAG2
------->
TEIL
<---------
ANAC58
------
ccacaagatgatgaaataaactctatggttctaatccctttttctaagtgtttgatataggtgaatcttgctttaatccttgtgtatttttctggcagtg
7602100
<---------
ZAT2
--------->
At4g35610
<---------
ANAC46
<---------
TOE2(3)
--------->
ZAT14
<---------
ZAT14
--------->
AHL20(2)
--------->
At4g35610
<---------
ICU4
<---------
GLK1(1)
<---------
At4g35610
----------->
HVH21
<---------
AHL20(2)
-------->
ZAT14
--------->
At4g35610
<------
MYB83
------->
TEIL
-------->
ZAT18
--------->
ZAT2
<------
MYB46(1)
<------
ZmHOX2a(1)
---------
ZAT14
<---------
At4g35610
---------->
DOF2
--------->
AHL20(2)
<----------
TaMYB80
--->
ALFIN1
---------->
DOF2
----------->
GT1
<--------
P
<---------
TOE2(3)
tgtccactgaggtgaagtcaaagctgacgagctcatgaagtcaaaacttcagaaagaatggtaggctaattaatactgaggatggatgtctgatattcca
7602200
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AGI:
At5g22790.1
Description:
RER1 (RETICULATA-RELATED 1). similar to LCD1 (LOWER CELL DENSITY 1) [Arabidopsis thaliana] (TAIR:AT2G37860.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO15721.1)
Range:
from: 7599149
to: 7601693
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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