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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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          --------->ARR14(1)
        --------->ATHB12
       --------->ICU4                     --------->ZAT14
       <---------YAB1                     ---------->DOF2
       ----------->ARR10      <-----------HVH21                                                   <-
  --------->ANAC58         --------->At4g35610                                                   <--
  --------->ANAC46         <---------At4g35610   <----------DOF2                               <----
  --------->ANAC58         --------->LBD16<-------TEIL                                --------->DEAR3(1)
<---------ALFIN1    <---------ALFIN1  --------->DAG2                             ---------->DOF2 <--
---->ZmHOX2a(1)   ----------->RAV1(1)---------->DOF2                      --------->ANAC46<---------LBD16
 
cctccacgcgatgattcgctccaacacttccgctgtcaccaaaagtacagccctttaatccactatcaactcgcttccctccattagagccgctcggggt  7570700
                                                                   --------->ATHB12
                                                          <---------MYB52(1) ------->MYC3
                                          --------->AHL20(1)      --------->ICU4
                                          <---------AHL20(2)      <---------YAB1
                                          <---------AHL20(1)    --------->YAB1
 --------->ALFIN1                 <---------ANAC46      <---------MYB46(3)   <-------MYC3      <----
-----ZmHOX2a(1)       <---------ARR14(2) --------->AHL20(2)    <------ZmHOX2a(2) ---------->DOF2
----MYB83 <-----------RAV1(2)<---------ANAC58      <---------At4g35610 --------->ANAC58     --------
----P  --------->REM1(1)     <---------ANAC58 <---------YAB1<---------MYB46(3)   ===================
----MYB46(1)  --------->ALFIN1 --------->ALFIN1    --------->At4g35610 --------->ANAC58 --------->ICU4
 
aggagtggctacatcaggtttggcgaaacttggagtgtcgaagattatattgatagcagccgttggatcatgattcgccatgtgtaaagccctgattata  7570800
                               --------->MYB52(1)
                              ----------->TGA1
                             ------>ZmHOX2a(2)
                            <---------At4g35610
                            --------->At4g35610
                     --------->O2                            <---------ANAC58
                     --------->TGA1a              ----------->RAV1(2)
                     ================================================bZIP_DOF
                --------->PCF2----------->HVH21 ------>ZmHOX2a(2)
               --------->ARR14(2)<---------DREB2C(2)         <---------ANAC58
 <-----------ARR10--------->TOE1(2)            <------ZmHOX2a(2)
 <---------ARR11(3)  --------->ANAC58         --------->ARR14(3)
 --------->ARR14(2)  --------->ANAC46         <---------ARR14(3)                       ------>ZmHOX2a(1)
 <---------ARR14(2)  --------->ANAC58         <---------ARR11(3)                      --------->TOE1(2)
<---------CCA1(2)--------->DEAR3(2)           --------->ARR11(3)               --------->TOE1(3)   -
-------GT1     <---------ARR14(2)<---------DEAR3(1)       <----------DOF2      --------->TOE2(3)  --
->AHL20(2)  --------->YAB1<---------ZAT14     --------->ARR14(2)         --------->HSFB2a(2)      <-
===============================bZIP_DOF       <---------ARR14(2)         <---------HSFB2a(2)     <--
 
tccatatctgagtaatcggaacccacgactgatctgacggtggaaacaagatcgtctgagactttcgttcccatttccaaaaccctaatcctacaatttt  7570900
                                                                                         --------->YAB1
                                                         ---------->DOF2            <---------ANAC58
                                           ---------->DOF2                          <---------ANAC58
                                  <---------ANAC58    <------NtERF2                 <---------ANAC46
-------->LBD16                    <---------ANAC58   --------->LBD16             --------->ALFIN1
------->LBD16                    <---------ZAT2     --------->RAP2.6(2)      <---------ZAT14
--------LBD16  <---------ZAT14   <---------At4g35610--------->LBD16          --------->ZAT18
-------LBD16  <----------DOF2  <---------ZAT18     <---------LBD16           --------->ZAT14
 
ccagggaaattttgaaactttactgaaaattcagtgagcttgtggctaaagaacgccggaaaaagaaaaccccaatgtagtacagtggcgaattatagaa  7571000
                            --------->ARR14(2)
                        --------->ANAC46
                       --------->SPL7
                     <---------SPL7
                    <---------ANAC58
                    <---------ANAC46
                    <---------ANAC58
                   <------NtERF2                                                        <---------AHL20(1)
                   <---------------AtSPL3                                               --------->AHL20(1)
                  ------>NtERF2      <---------ARR14(2)                                 --------->AHL20(2)
                 <---------DEAR3(1)  --------->ARR14(2)                                 <---------AHL20(2)
                --------->ATERF1(1) --------->ATERF1(1)                                --------->AHL20(2)
               ------>NtERF2<---------ARR14(2)     --------->ANAC58                    --------->YAB1
               <---------ATERF1(1) <---------SPL7  ----------->GT1                   *TSS <---------
              --------->DEAR3(1)   --------->LBD16 --------->ANAC58               ------>NtERF2
              ----------->HVH21    ----------->HVH21                              --------->LBD16
            ------>NtERF2  <---------GLK1(1) --------->CCA1(2)  <---------O2     --------->ANAC58
           --------->DEAR3(1)    <---------LBD16  --------->LBD16                --------->ANAC58
      --------->ARR14(2)--------->ANAC58    --------->ARR14(2)  --------->O2     --------->ANAC46
      <---------ARR14(2)--------->ANAC58 --------->LBD16     <----------ID1     <---------LBD16
 
attgaagtagatcgacgacgacggcgtacgaaatctgccggacccgagaaacgcgcgtaaattagcgacgagtctctcaaattcccgccattatattgtt  7571100
                                                                                   --------->LBD16
                                                                                  --------->ANAC58
                                                                                  --------->ANAC46
                                                                                  --------->ANAC58
                                                                                 ------->GAMYB
                                                                                 <---------LBD16
                                                                                XXXXXXXXXXXXXXXXXXXX
                                                                          --------->LBD16
                                                                         <---------ANAC46
                                                                        ------>ZmHOX2a(2)
                                                                        <---------LBD16
                                                                       --------->ARR14(1)
                                                                       --------->CCA1(2)
                                                                       <------ZmHOX2a(2)
                                                                      --------->ARR11(3)
                                                                      <---------AGP1
                                                                      <---------ARR14(2)
                                                                      --------->AGP1<---------ALFIN1
                                            <---------ANAC46          --------->ARR11(1)
                                            <---------ANAC58          --------->ARR14(2)
                        ----------->GT1     <---------ANAC58          <---------ARR11(3)
                       --------->DAG2       <---------bZIP60(2)     ----------->ARR10
            ----------->GT1                ----------->STF1        <---------HSFB2a(2)
            <---------YAB1               ----------->TGA1          --------->HSFB2a(2)   --------->LBD16
<---------AHL20(2)   ---------->DOF2     ----------->HVH21 --------->MYB52(1)  <XXXXXXXXXXXXXXXXXXXXMIR2111A*
---CBF --------->ANAC55(2)          --------->MYB52(1)    ----------->HVH21  ----------->HVH21
 
ttttttattcaagtgatgaaaatagaaaggtaaattcaaaaacggtgacgttttaaaatccctaacgggtctagatccgggtaacccgcatcccgagttg  7571200
                        --------->ARR11(3)            <---------ANAC46
                        <---------ARR11(3)          <---------ZAT14             --------->DAG2
                        <---------ARR14(2)          --------->ZAT18            ---------->DOF2
      <-----------GT1   --------->GLK1(2)           --------->ZAT14     --------->ATHB12     <------
>MIR2111A/B             --------->ARR14(2)         --------->ALFIN1    <---------YAB1    <----------DOF2
 
aactcagtttaacaattagaccacaaaaatctgccattaactcagaagtgagaagtgtagtagaaccattcgacacgattgaaaaagctcatctttttta  7571300
                          --------->At4g35610                       <---------ARR11(3)
                          <---------At4g35610              <-------GAMYB
                     --------->ANAC58                     <---------MYB46(3)
                     --------->ANAC55(2)                 <---------ANAC46
                     <---------ANAC55(1)                 <---------AtMYB61
                     <---------ANAC55(2)               <---------MYB46(3)
                     <---------ANAC58                 --------->ALFIN1
                     --------->ANAC58            --------->YAB1 --------->YAB1
                     <---------ANAC58          <---------WOX13(1)   --------->ARR11(3)
                     <---------ANAC46        --------->ATHB12  <---------YAB1
                <---------MYB46(3)     ------->MYC3   <---------AtMYB61  <---------STY1(2)
---AHL20(2) <----------DOF2            <-------MYC3<---------AtMYB61--------->GLK1(2)  ------------>CBF
 
tttctatgtctctctcttttggttacgtaagctctctgtccatatgcttcattgatggtggtggttatcaaaatctagcaaggttttagcttcaattctg  7571400
                                    <---------GLK1(1)
                          <---------ANAC46
                          <---------O2                           <------------------------ANAC81
                          --------->TGA1a                     <----------DOF2
                          ===============================================bZIP_DOF
                          <---------TGA1a                 --------->ANAC58         <----------DOF2
                          ----------->GT1                 --------->ANAC58       <---------At4g35610
                          --------->O2                   <---------LBD16         --------->At4g35610
                   <---------ZAT2  --------->ARR11(3)  <------ZmHOX2a(2)    <---------ANAC58
                   --------->ZAT2  <---------ARR11(3) <-----------HVH21     <---------ANAC58
       <-----------GT1<-----------RAV1(2)          <---------TOE1(2)   <----------DOF2            <-
 
tccatatgtttatccatttccaagctcagacgtgaaaagatttcagatttatcgctggatcacggctttgatttcttttgcttcagctttgaatttgatt  7571500
                            --------->ARR11(3)
                            <---------GLK1(2)
                       ------>ZmHOX2a(2)
                     <---------AGP1                                     --------->ARR11(3)
                     --------->ARR11(3)                                 <---------ARR11(3)
                     <---------ARR11(3)                   ----------->TBP
                     --------->ARR14(2)   --------->ARR14(2)          ----------->ARR10     <-------
   <---------ANAC58  <---------ARR14(2)   <---------ARR14(2) ---------->DOF2            ---------->DOF2
   <---------ANAC58 <---------CCA1(2)--------->ALFIN1  <---------AHL20(2)          --------->YAB1
---------DOF2      <---------MYB46(3)<---------ANAC46 --------->AHL20(2)<---------GLK1(2)   --------
 
tcttttgcttcagatttatcggtggatcttagattttgatgtgggtatatggttcgattttataaaaagaagttagatttttggaatcatagaaagggat  7571600
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AGI:  At5g22750.1   
Description:  RAD5; ATP binding / DNA binding / helicase/ protein binding / zinc ion binding. Identical to Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Arabidopsis Thaliana] (GB:Q9FNI6;GB:Q0WQK0); similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43530.1); similar to putative DNA repair protein [Ipomoea trifida] (GB:AAS79594.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16701.1); similar to hypothetical protein OsI_007335 [Oryza sativa (indica cultivar-group)] (GB:EAY86102.
Range:  from: 7565040    to: 7571086    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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