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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
NtERF2
--------->
LBD16
<---
------>
NtERF2
----
<---------
ANAC46
--------->
WRKY18(1)
----
<---------
LBD16
<------
MYB83
----
--------->
LBD16
<------
MYB46(1)
<-------
<---------
LBD16
--------->
At4g35610
--------->
MYB59
<-------
------->
ANAC46
<---------
At4g35610
<---------
YAB1
---------
------->
ANAC58
--------->
ARR14(2)
<---------
At4g35610
---------
------->
ANAC58
------->
TEIL
------>
ZmHOX2a(1)
---------
>
GT1
--------->
GLK1(2)
--------->
HSFB2a(1)
---------
-------->
WRI1
<---------
CCA1(2)
----------->
GT1
--------->
ARR14(2)
---------
cacgccgggaaattctgtatccattgagatgaatgggtaatcttcgacgattcctctgattaggtcaaactctgactcgagattataagcccaaacgtca
7366400
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
YAB1
--------->
CCA1(2)
------
ANAC55(2)
--------->
ARR11(3)
----->
ANAC58
--------->
AGP1
<<<<<<<<<
TBF1
----->
ANAC55(2)
--------->
ARR14(3)
<---------
ARR11(3)
----->
ANAC58
<---------
ARR14(2)
--------->
ARR11(3)
----
TGA1
<---------
ARR11(3)
--------->
MYB59
----
HVH21
--------->
ARR14(2)
<----------
DOF2
>
ANAC58
<---------
GLK1(1)
------>
ZmHOX2a(2)
>
ANAC46
--------->
GLK1(1)
--------->
YAB1
<------
ZmHOX2a(2)
<-
>
ANAC58
----------->
ARR10
<---------
YAB1
--------->
ARR14(2)
----------
>
O2
<-----------
HVH21
<---------
YAB1
<---------
ARR11(3)
--------->
YAB1
>
TGA1a
<------
ZmHOX2a(2)
<---------
At4g35610
<---------
ARR14(2)
<---------
AHL20(2)
cgaatcacgatcacatcggagagatctgcttctgatttgatcat
agtttcaagtcccgatcttttaggtcttcttcttcgttgtgaatttatcaaaagtc
7366500
----------->
GT1
<------
MYB83
------->
TEIL
<------
ZmHOX2a(1)
<------
MYB46(1)
<---------
AHL20(2)
<------
ZmHOX2a(1)
--------
MYB52(1)
<---------
AtLEC2
<---------
YAB1
<------
ZmHOX2a(1)
---
>
DOF2
--------->
ATHB12
----------->
GT1
<---------
TOE1(1)
--------->
ALFIN1
tgtttttttttgttgatttggttaatctgcaaggtttagttatatatatgaatgtgagtaagagagtgtttacgaggaaggagaggagaagaagtgtgag
7366600
<---------
YAB1
<-------
MYC2
-------->
ATHB1
------->
MYC2
--------->
ATHB51
<-------
MYC3
--------->
ATHB12
------->
MYC3
<---------
ICU4
<---------
TOE1(2)
<---------
ATHB51
<---------
TOE2(2)
<---------
CCA1(2)
<---------
ALFIN1
<---------
ANAC46
--------->
ANAC58
------>
ZmHOX2a(1)
--------->
ANAC58
<---------
ANAC58
<---------
ANAC58
--------->
ICU4
<---
------>
CCA1(2)
<---------
ANAC58
<---------
ANAC58
------------>
ATHB5
<--------
aaacgcgcacgtttatgattcaatgtgtttcttgacttagtctaagttggcttctccttcgtgtatcgaattattgcaattcaagtcgttgtatttaagt
7366700
------>
NtERF2
<---------
RAP2.6(3)
--------->
DEAR3(1)
<---------
ETT(1)
<---------
ARR11(3)
--------->
RAP2.6(2)
--------->
ARR11(3)
<---------
At4g35610
<---------
GLK1(2)
--------->
ANAC46
---------->
DOF2
<---------
YAB1
*
TSS
-----
<-------
TEIL
--------->
YAB1
<-------
TEIL
<---------
TOE2(3)
------------
AtSPL8
--------->
YAB1
<---------
TOE2(3)
<---------
DOF5.7(2)
<
-
AHL20(2)
<----------
ID1
<----------
ID1
----------->
ARR10
--------->
AHL20(2)
<---------
SPL7
aagtacattaagccgacaagaataagaaggccaagtacattaagattttctattggtttttaagagttgaataaaacatgt
aaacgttacgacttacgac
7366800
<----
-------
--------
--------->
TOE2(3)
-------->
ATHB1
<------------
CBF
<--------
HAHB4
<---------
LBD16
---------->
DOF2
--------->
YAB1
<---------
DAG2
------------>
CBF
--------->
ANAC58
--------->
ATHB12
<----------
DOF2
<-----------
GT1
--------->
ANAC55(2)
----------->
GT1
<-------
------->
TEIL
<---------
KAN4(1)
<---------
ANAC55(2)
--------->
ANAC58
<---------
ICU4
------->
CBF
<------
ZmHOX2a(1)
--------->
YAB1
--------->
ANAC58
---------->
DOF2
<---------
GLK1(2)
---------
ATHB12
--------->
KAN4(1)
<---------
ATHB12
<-----------
GT1
--------->
ANAC58
<---------
ATHB12
caatgaactttatcaggaatattgctatattaccaataaacactgaatatgtaacgacgcactaaaaacgcattaaagggttgaatcattagattatgat
7366900
<---------
YAB1
--------->
ARR14(2)
<---------
ARR14(2)
--------->
GLK1(2)
--------->
ANAC55(1)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC55(2)
--------->
ANAC55(2)
<---------
REM1(2)
--------->
ANAC46
<---------
ETT(2)
--------->
ANAC58
-----
YAB1
------->
TEIL
<----------
DOF2
<---------
REM1(1)
<---------
TOE2(2)
-->
YAB1
<---------
CCA1(2)
--------->
ANAC58
<---------
TOE1(2)
->
ICU4
<---------
ANAC55(2)
<-----------
GT1
------->
GAMYB
<---------
YAB1
-----
--
YAB1
--------->
ANAC58
<---------
TOE2(3)
----------->
RAV1(1)
<----------
DOF2
<----
gatgtctacacgtatctgattgtgctttaatgttttcacgaaattgtagcaacagcgaagcctaggttgagcccttttcagttttcattgttccctagtt
7367000
<---------
GLK1(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
LBD16
<---------------
AGL15
------->
TEIL
--------------->
AGL15
<---------
GLK1(2)
<---------
HSFB2a(2)
<---------
CCA1(2)
<------
MYB83
--------->
HSFB2a(2)
<---------
ARR11(3)
<---------
ARR14(1)
<---------
ZAT6
<-----------------
AG
--------->
HSFC1(1)
XXXXXXXXXXXXXXXXXXXXX>
MIR777
<-----------------
AGL1
--------->
HSFB2a(2)
---->
ZAT14
<------
MYB46(1)
<-----------------
AGL2
<---------
HSFB2a(2)
-----
ZAT18
<----------
DOF2
----------------->
AGL2
<---------
HSFC1(1)
tactcatcgaatctcatgactttgttggtagtgtttagaagattgttcttccagatttggatgtaagtcccaatttctagaaacaatatcacaaacgtag
7367100
<----------
DOF2
--------->
YAB1
--------->
YAB1
<---------
WRKY18(1)
<---------
AHL20(2)
--------->
WRKY38(1)
--------->
LBD16
<---------
YAB1
--------->
WRKY45
----------->
HVH21
<---------
ANAC58
--------->
AHL20(1)
--------->
WRKY12
<---------
MYB46(3)
<---------
ANAC58
--------->
AHL20(2)
--------->
DOF5.7(2)
<---------
ANAC55(2)
<---------
ANAC46
<---------
AHL20(1)
<------
ZmHOX2a(1)
----------->
GT1
<--------
atagtccgtggagttttccatcttcagtcaatataataagaaactttttaggacgttgaccttgaacagagttgttaaacacatgactgtttttctttca
7367200
<---------
ICU4
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<----
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
<---------
AHL20(1)
<---------
AHL20(2)
----------->
GT1
--------->
AHL20(2)
<----------
DOF2
<---------
ATHB51
<-------
TEIL
--------->
AHL20(2)
--
DOF2
<---------
TOE2(3)
<---------
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
tttcctttgtttgcaataacttgatattgttccatgttaatgaagaaataatttattaattccaaatgcatcaattgtaaaactaaattatttaaattat
7367300
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AGI:
At5g22250.1
Description:
CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT3G44260.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76920.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941)
Range:
from: 7365535
to: 7366781
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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