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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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   <------NtERF2
  --------->LBD16                                                                               <---
  ------>NtERF2                                                                                 ----
 <---------ANAC46                                           --------->WRKY18(1)                 ----
 <---------LBD16                                          <------MYB83                          ----
 --------->LBD16                                          <------MYB46(1)                   <-------
<---------LBD16        --------->At4g35610               --------->MYB59                    <-------
------->ANAC46         <---------At4g35610          <---------YAB1                         ---------
------->ANAC58--------->ARR14(2)                  <---------At4g35610                      ---------
------->ANAC58------->TEIL                        ------>ZmHOX2a(1)                        ---------
>GT1    --------->GLK1(2)                   --------->HSFB2a(1)                            ---------
-------->WRI1<---------CCA1(2)----------->GT1 --------->ARR14(2)                           ---------
 
cacgccgggaaattctgtatccattgagatgaatgggtaatcttcgacgattcctctgattaggtcaaactctgactcgagattataagcccaaacgtca  7366400
                     ------>ZmHOX2a(2)
                    <------ZmHOX2a(2)
 --------->YAB1     --------->CCA1(2)
------ANAC55(2)    --------->ARR11(3)
----->ANAC58       --------->AGP1                                     <<<<<<<<<TBF1
----->ANAC55(2)    --------->ARR14(3)                          <---------ARR11(3)
----->ANAC58       <---------ARR14(2)                          --------->ARR11(3)
----TGA1           <---------ARR11(3)                        --------->MYB59
----HVH21          --------->ARR14(2)                    <----------DOF2
>ANAC58           <---------GLK1(1)                     ------>ZmHOX2a(2)
>ANAC46           --------->GLK1(1)  --------->YAB1    <------ZmHOX2a(2)                          <-
>ANAC58          ----------->ARR10  <---------YAB1    --------->ARR14(2)                  ----------
>O2  <-----------HVH21      <---------YAB1            <---------ARR11(3)                --------->YAB1
>TGA1a<------ZmHOX2a(2)   <---------At4g35610         <---------ARR14(2)            <---------AHL20(2)
 
cgaatcacgatcacatcggagagatctgcttctgatttgatcatagtttcaagtcccgatcttttaggtcttcttcttcgttgtgaatttatcaaaagtc  7366500
               ----------->GT1
               <------MYB83                    ------->TEIL                      <------ZmHOX2a(1)
               <------MYB46(1)          <---------AHL20(2)                  <------ZmHOX2a(1)
--------MYB52(1)         <---------AtLEC2   <---------YAB1              <------ZmHOX2a(1)        ---
>DOF2     --------->ATHB12       ----------->GT1                    <---------TOE1(1)     --------->ALFIN1
 
tgtttttttttgttgatttggttaatctgcaaggtttagttatatatatgaatgtgagtaagagagtgtttacgaggaaggagaggagaagaagtgtgag  7366600
           <---------YAB1
      <-------MYC2                                                 -------->ATHB1
      ------->MYC2                                                 --------->ATHB51
      <-------MYC3                                                 --------->ATHB12
      ------->MYC3                                                 <---------ICU4
    <---------TOE1(2)                                             <---------ATHB51
    <---------TOE2(2)                                      <---------CCA1(2)
   <---------ALFIN1                                    <---------ANAC46
 --------->ANAC58                                    ------>ZmHOX2a(1)
 --------->ANAC58         <---------ANAC58    <---------ANAC58    --------->ICU4                <---
------>CCA1(2)            <---------ANAC58    <---------ANAC58 ------------>ATHB5          <--------
 
aaacgcgcacgtttatgattcaatgtgtttcttgacttagtctaagttggcttctccttcgtgtatcgaattattgcaattcaagtcgttgtatttaagt  7366700
          ------>NtERF2
          <---------RAP2.6(3)
         --------->DEAR3(1)
         <---------ETT(1)               <---------ARR11(3)
         --------->RAP2.6(2)            --------->ARR11(3)
       <---------At4g35610              <---------GLK1(2)                       --------->ANAC46
    ---------->DOF2                   <---------YAB1                            *TSS           -----
<-------TEIL    --------->YAB1  <-------TEIL                                   <---------TOE2(3)
------------AtSPL8 --------->YAB1     <---------TOE2(3)                       <---------DOF5.7(2)  <
-AHL20(2)<----------ID1 <----------ID1----------->ARR10             --------->AHL20(2)   <---------SPL7
 
aagtacattaagccgacaagaataagaaggccaagtacattaagattttctattggtttttaagagttgaataaaacatgtaaacgttacgacttacgac  7366800
                                                                                               <----
                                                                                             -------
                                                                                            --------
                                                                                   --------->TOE2(3)
                                                                                  -------->ATHB1
                <------------CBF                                                  <--------HAHB4
         <---------LBD16                                    ---------->DOF2       --------->YAB1
    <---------DAG2          ------------>CBF         --------->ANAC58             --------->ATHB12
    <----------DOF2       <-----------GT1    --------->ANAC55(2)          ----------->GT1   <-------
  ------->TEIL <---------KAN4(1)             <---------ANAC55(2)--------->ANAC58  <---------ICU4
------->CBF <------ZmHOX2a(1)    --------->YAB1      --------->ANAC58 ---------->DOF2   <---------GLK1(2)
---------ATHB12--------->KAN4(1)<---------ATHB12<-----------GT1 --------->ANAC58 <---------ATHB12
 
caatgaactttatcaggaatattgctatattaccaataaacactgaatatgtaacgacgcactaaaaacgcattaaagggttgaatcattagattatgat  7366900
            <---------YAB1
         --------->ARR14(2)
         <---------ARR14(2)
         --------->GLK1(2)
      --------->ANAC55(1)
      --------->ANAC58
      --------->ANAC46
      --------->ANAC55(2)         --------->ANAC55(2)
   <---------REM1(2)              --------->ANAC46
 <---------ETT(2)                 --------->ANAC58
-----YAB1------->TEIL<----------DOF2    <---------REM1(1)  <---------TOE2(2)
-->YAB1 <---------CCA1(2)         --------->ANAC58         <---------TOE1(2)
->ICU4<---------ANAC55(2)       <-----------GT1  ------->GAMYB                  <---------YAB1 -----
--YAB1--------->ANAC58   <---------TOE2(3)    ----------->RAV1(1)     <----------DOF2          <----
 
gatgtctacacgtatctgattgtgctttaatgttttcacgaaattgtagcaacagcgaagcctaggttgagcccttttcagttttcattgttccctagtt  7367000
                                                  <---------GLK1(2)
                                                  --------->ARR14(2)
                                                  <---------ARR14(2)
                                                --------->LBD16
                                               <---------------AGL15
      ------->TEIL                             --------------->AGL15
     <---------GLK1(2)                         <---------HSFB2a(2)
     <---------CCA1(2)<------MYB83             --------->HSFB2a(2)                 <---------ARR11(3)
     <---------ARR14(1)    <---------ZAT6     <-----------------AG       --------->HSFC1(1)
XXXXXXXXXXXXXXXXXXXXX>MIR777                  <-----------------AGL1     --------->HSFB2a(2)
---->ZAT14            <------MYB46(1)         <-----------------AGL2     <---------HSFB2a(2)
-----ZAT18      <----------DOF2               ----------------->AGL2     <---------HSFC1(1)
 
tactcatcgaatctcatgactttgttggtagtgtttagaagattgttcttccagatttggatgtaagtcccaatttctagaaacaatatcacaaacgtag  7367100
                                        <----------DOF2
                                 --------->YAB1
                              --------->YAB1         <---------WRKY18(1)
                             <---------AHL20(2)     --------->WRKY38(1)
   --------->LBD16           <---------YAB1         --------->WRKY45           ----------->HVH21
  <---------ANAC58          --------->AHL20(1)      --------->WRKY12<---------MYB46(3)
  <---------ANAC58          --------->AHL20(2)     --------->DOF5.7(2)       <---------ANAC55(2)
  <---------ANAC46          <---------AHL20(1) <------ZmHOX2a(1)    ----------->GT1        <--------
 
atagtccgtggagttttccatcttcagtcaatataataagaaactttttaggacgttgaccttgaacagagttgttaaacacatgactgtttttctttca  7367200
                                                     <---------ICU4
                                                    --------->AHL20(2)
                                                --------->AHL20(1)
                                                <---------AHL20(1)
                                                --------->AHL20(2)
                                                <---------AHL20(2)
                                             --------->AHL20(2)                                <----
                                             --------->AHL20(1)                     --------->AHL20(2)
                                             <---------AHL20(2)                     <---------AHL20(2)
                                            --------->AHL20(2)                     <---------AHL20(2)
                                            --------->ICU4                         <---------AHL20(1)
                                            <---------AHL20(2)         ----------->GT1  --------->AHL20(2)
 <----------DOF2                            <---------ATHB51   <-------TEIL        --------->AHL20(2)
--DOF2                             <---------TOE2(3)<---------AHL20(2) --------->YAB1   <---------AHL20(2)
 
tttcctttgtttgcaataacttgatattgttccatgttaatgaagaaataatttattaattccaaatgcatcaattgtaaaactaaattatttaaattat  7367300
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AGI:  At5g22250.1   
Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT3G44260.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76920.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941)
Range:  from: 7365535    to: 7366781    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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