Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             ---------->DOF2                       ------>MYB83                       ------>MYB46(1)                      ----------->RAV1(1)                   >>>>>>>>>>MYB80                                                 <---------HSFC1(2)             ----------->GT1                                            --------->LBD16            <---------TOE1(3)    --------->ANAC58                       ------>NtERF2             <--   <---------TOE2(3) --------->AtMYB61                                <---------LBD16             ---   <---------TOE1(3)--------->MYB46(3)                         ------->TEIL        --------->HSFC1(2) --->DOF2   <---------TOE2(3)    --------->ANAC58          <---------WOX13(1) <---------------------WRI1   gggttacggttctcaaggttaaaccaacacaaagcacggccttcgacactcatgtaaactaattgaatcttctccgcgtctgtgaaacttccaaactcga  7082800                                                                           --------->ZAT2                                       --------->TOE1(2)                   <---------At4g35610                                      <---------HSFC1(2)                   <---------ZAT2           <                                      <---------HSFB2a(1)                  --------->At4g35610      <                                      --------->HSFC1(2)                 <-----------RAV1(2)        <        <---------ZAT14               --------->HSFB2a(1)               <---------At4g35610        <-        <---------At4g35610    --------------------->WRI1             --------->REM1(1)            --        --------->ZAT14      <---------TOE2(3)               ------>ZmHOX2a(2)                    --- -------HSFC1(2)             <---------YAB1                <---------ARR11(3)         <---------ANAC58 ------>HSFC1(2)            <<<<<<<<<<<<<<<<<LFY           --------->ARR11(3)         <---------ANAC58   agtatcgttctgctctggtgagccatgagttaacattgggaccttcgaagactggcatctcgatcttgggcttcatcagctgaatgtagcgagacatacg  7082900                                <------NtERF2         --------->REM1(2)      --------->ATERF1(1)       <---------MYB46(3)      --------->ANAC55(2)      <------NtERF2             <---------DEAR3(1)      <---------ANAC55(2)      --------->LBD16           <---------AtMYB61      <---------ANAC58         --------->At4g35610       --------->ALFIN1      <---------ANAC58         <---------At4g35610     <---------MYB46(3)      <---------ANAC46         ------>NtERF2          --------->ALFIN1                    --------->TOE2(3)     <-------TEIL             --------->DEAR3(1)      <---------DEAR3(1)         <---------ALFIN1    --------->ALFIN1         --------->ATERF1(1)      <---------AtMYB61         ------>ZmHOX2a(2) <---------MYB46(3)         <---------ATERF1(1)   =====================================HOX2a_HOX2a -- ---------ANAC58            ------>NtERF2         <------ZmHOX2a(1)             --------->MYB46(3)<-- ---------ANAC58            --------->LBD16     <---------TOE1(2)             <---------ARR11(3)  <-- ---------ANAC46           <---------ALFIN1   --------->TOE1(2)             --------->ICU4=========== --------LBD16             --------->ANAC46  <---------ANAC58               <---------YAB1<----------DOF2 ------->ABI4(2)           --------->DEAR3(1)<---------ANAC46          <------MYB83  --------->At5g28300 ------>ALFIN1           ------>ZmHOX2a(1)   <---------ANAC58          <------MYB46(1)<---------MYB52(1)   gtgcgggtgcgtgtcgattgagttatcctccgccgcggtcgattgtttcgtaggaggtggtggtgctacagggaggtcatgatccaccgtaactttagta  7083000                                                                                                   <-                                                                                                  ---                         <-------GAMYB                                                            ---                        --------->MYB111(2)                                                      ----                        <---------MYB46(3)                                                       <---                        --------->MYB55(2)                                                       ----                      <---------ANAC58                                                          -----               --------->At4g35610                                                              -----           <---------REM1(1)                                                                    -----     --------->O2     <---------ANAC46                                                         ------     <---------O2  <---------ANAC46                                                            ------     <---------TGA1a  <---------ANAC58                                                        <------     --------->TGA1a  <-------GAMYB                                                           -------     =========================MYC_MYB                                                         -------     =========================MYC_MYB                                                         <------     ===========================MYC_MYB            ------>NtERF2                              <------ ------->GLK1(2)   --------->ALFIN1               --------->ANAC46                            ------- -------ARR14(2) <-----------RAV1(1)             <---------LBD16                             -------- -------GLK1(2)<---------At4g35610            <---------At4g35610                      <-----------ARR10 ==============bZIP_DOF<--------P  --------->ALFIN1--------->LBD16     ----------->HVH21 <---------MYB52(2)   gattccgacgttgctgtagctgtgggttgttgaagaagtgctgatttcatctccgccatggaatttagagtctcggacatggaattgagtaactcaccaa  7083100      <---------ZAT14      --------->ZAT14   <---------ANAC46 ----------HVH21 ---->GAMYB ------>DEAR3(1) ----->MYB46(3)                                                      --------->DEAR3(1) ---------AtMYB77                                                    <---------ETT(2) ----->DEAR3(2)                                                      --------->ETT(2) ->MYB46(1)                                                          --------->WRKY38(1) --->P--------->ZAT18                                            <---------HSFB2a(1) ->MYB83                                                       <---------ARR14(2) --->MYB55(1)                                                  --------->ARR14(2)  <---------ARR14(2) --->MYB52(1)                                                --------->LBD16       --------->GLK1(2) ---MYB46(2)                                                --------->ANAC46       --------->ARR14(2) -->DEAR3(1)                                               --------->At4g35610    <---------GLK1(2) -->MYB46(3)                          ------->TEIL         <---------LBD16     --------->HSFB2a(2) ---MYB55(2)                       --------->ANAC46    ------->TEIL  --------->WRKY12 ---MYB111(2)--------->ANAC58      --------->ANAC58    --------->ARR14(2)      <---------HSFB2a(2) -->AtMYB61  --------->ANAC58      --------->ANAC58    <---------ARR14(2)     ------>ZmHOX2a(2)------ ->MYB46(3)---------->DOF2       <---------ALFIN1      --------->GLK1(2)    --------->AGP1  <--------   ccgtcgagtgaagtaaagccatcgtattttgaactccacgcatcgattctatcagtgaatctgcggaatcgtcgacctgatctagaatctgtatcgctgc  7083200                                                                                                   --                             --------->MYB46(3)                                                    --                         <---------MYB52(2)                                                        <-                         --------->MYB46(3)                                                        --                       --------->MYB52(1)                                                --------->YAB1                      ------->GAMYB                      <----------DOF2             <------ZmHOX2a(1)                     --------->MYB46(3)           <-----------GT1                   --------->ANAC46 >NtERF2 ------->TEIL<---------MYB52(2)     --------->ANAC46                      <---------LBD16 --- -At4g35610 <---------YAB1  *TSS        ------>ZmHOX2a(1)<---------DAG2  <---------AHL20(2) ---------   cattgaagatgaatttgatagcaacgaacgaacaaacttctcctctacgaaaaaaccctctttttctatacatgttttatttcttcaggaaacataaaga  7083300                                                                 <---------ALFIN1                                                               --------->ANAC46                                                            <---------ATERF1(1)                                                            <---------ALFIN1                                                           <---------ATERF1(1)                                                           <---------ALFIN1                                                          <---------ALFIN1                                                          <---------ATERF1(1)                                                         <---------ATERF1(1)                                                         <---------ALFIN1           <---------ETT(2)                             <---------ATERF1(1)     <---------ALFIN1                                   <---------ALFIN1     ----------->RAV1(1)                               <---------ATERF1(1)  --------->PCF2                                      <---------ATERF1(1)  --------->ANAC46                                    <---------ALFIN1 --------->PCF5                                      <---------ATERF1(1) <---------PCF2  ------>MYB83                        <---------ALFIN1                      <---------RVE1(1) --------->TCP11(2)                          <---------ANAC58 --------->ANAC46             <---------CCA1(1) --------->TCP16(1)                          <---------ANAC58<---------ALFIN1             --------->ARR11(3) ------->WRKY38(1)                     --------->ATHB12<---------ALFIN1                   <---------ARR11(3) ------->WRKY12  ------>MYB46(1) <---------ZAT18    <---------ALFIN1                     --------->YAB1 --------ZAT18 --------->AtMYB61 --------->ZAT18    --------->DEAR3(1)          <---------ANAC58 ------->ZAT18 <---------MYB59   <---------ZAT14   <---------ATERF1(1)      <-----------HVH21  <----- ------>ALFIN1 <---------MYB111(1)   <----------DOF2<---------ATERF1(1) <-----------GT1 <---------ATHB12 ->DOF2    --------->ETT(2)    <---------DEAR3(1)  ------>NtERF2--------->LBD16 <---------ANAC58   gtggaccccacagtcgacctactcatcaaaacgactgcgcttcatttgcttgcccccccccccccccccaattttctctgtcccttgccaatgatatttt  7083400                                                 <---------ZAT14             --------->ZAT18     <---                                                 --------->ZAT18             <---------ZAT14  -------                         ---------->DOF2    <---------YAB1           --------->ARR14(2)       <------               <-----------HVH21     <----------DOF2                 <---------ARR14(2)      <-------              --------->bZIP60(1)   --------->TOE2(3)             --------->ANAC58           -------- ----AHL20(2) <---------bZIP60(1)   --------->TOE1(3)             --------->ANAC58   --------->ZAT6<-   tttttttttaacaaggatgtcactcacaaaagactaaacctttaatatgagtagactaaattagtggcaaggatttgagtagactaaacactaagaaatc  7083500                                                     <---------ETT(2)                                               <---------TOE1(1)                                           <------MYB46(1)                                        ---    <---------ANAC46                       <------MYB83           <------NtERF2                   ---  <---------ANAC46                         <---------MYB46(3)    <------NtERF2                 ------ -------DOF2                       --------->ALFIN1  --------->ETT(2)   ----------->GT1        ------ -->ARR11(3)                     <XXXXXXXXXXXXXXXXXXXXMIR165A/B  --------->LBD16               ------ ---ARR11(3)                     <XXXXXXXXXXXXXXXXXXXXMIR166A-G<---------LBD16               <------- --GLK1(1)            <---------ANAC58  <---------ANAC58       --------->SPL7                <------- ->GLK1(1)            <---------ANAC58  <---------ANAC58      ------>NtERF2               <---------- ----------RAV1(1)    <---------ANAC46  <---------ANAC46    <---------RAP2.6(2)--------->GLK1(2) ----   tttgttgtgtatattgctaaaattgcgtccaaggagagtgaggcttggttcgaggtagacatgcggccggaagagggtgagaaactgagaattaacctaa  7083600                                                                               <---------At4g35610                                                                               --------->At4g35610                                                                               <---------ZAT2                                                                               <-------GAMYB                                                                               <------NtERF2                                                                              <---------DEAR3(2)                                                                             <---------DEAR3(1)                                                                             <---------At1g77200                                                                             <---------DREB2C(2)                                                                             <---------RAP2.3(3)                                                                             <---------RAP2.6(2) --------->YAB1                                                              --------->ETT(1) ------>YAB1                                                                --------->ATERF1(1) ---->GAMYB                   <---------MYB46(3)                            <------NtERF2 >MYB46(1)                <-------TEIL                                      --------->RAP2.6(3) >MYB83                <------MYB83 <---------YAB1                         <-----------HVH21 --->MYB52(1)          <------MYB46(1)                                    --------->ALFIN1 --MYB46(2)           --------->MYB111(1)                                 <---------ANAC46 --MYB59              --------->MYB59--------->YAB1  --------->GLK1(2) <---------AtMYB61<-----------GT1 -GT1 <----------DOF2 <---------TOE1(2)  --------->DAG2          ------->TEIL<---------ANAC46 <------ ----->MYB46(3)      <--------P  <-------TEIL<-------TEIL    <---------KAN4(2)<---------MYB46(3)   ccatcatactttcacttgtagtagtaggttgatggttcatgataaggctcatgagaaactgagaatgaacctagtggtgtcggctggattttacaacttt  7083700  Previous    Next  AGI:  At5g20880.1    Description:  transposable element gene. retrotransposon family Range:  from: 7082106    to: 7083228    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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