Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 <---                                                                                               <-----                                                                                           ------>ZmHOX2a(2)                                                                                          <---------GLK1(1)                                                                                          <------ZmHOX2a(2)                                                                                         <-----------ARR10                                                                                         <---------ARR14(3)                                                   <---------At4g35610                   --------->ARR14(3)                                               --------->MYB52(1)                        <---------ARR11(3)                                            --------->ANAC58         --------->YAB1      --------->ARR14(2)                                            --------->ANAC46  ----------->GT1            <---------ARR14(2)                                            <---------ANAC55(2)   --------->WOX13(1)     --------->ARR11(3)                       ----------->GT1      --------->ANAC58--------->GLK1(2)    <---------GLK1(1)                --------->ANAC46            --------->ANAC55(2) <---------MYB52(1)       <---------AGP1                --------->ANAC58     ------>ZmHOX2a(1)     <---------GLK1(2)     --------->GLK1(1) -------->DOF2  --------->ANAC58<---------ANAC58   --------->At4g35610          <---------ARR14(2) -->REM1(1)<----------DOF2      <---------ANAC58  ------->GAMYB--------->TOE2(3)--------->ARR14(2)   caaaagccctaaactttcactcaagttgttaatagcttcctagctcaagtaacagcagagagaatcgttaatcagaaatggggaactccaagatctcagc  7021700                  <------NtERF2                 <---------RAP2.6(3)                 --------->LBD16                 ------>NtERF2                >>>>>>>>>AtERF-1                --------->RAP2.3(3)                >>>>>>>>>AtERF-5                --------->RRTF1(3)                --------->RRTF1(2)                --------->RAP2.3(2)                >>>>>>>>>AtERF-3                --------->DEAR3(1)                --------->ATERF1(2)                --------->RAP2.6(2)                                                    --------->LBD16                <---------ATERF1(2)                                                  <---------LBD16                >>>>>>>>>AtERF-7                                                  <---------HSFB2a(1)                >>>>>>>>>AtERF-2                                                  <---------HSFC1(2)                >>>>>>>>>AtERF-4                                                 --------->ARR14(2)               --------->ATERF1(1)                                               ---------->TaMYB80               --------->RRTF1(1)                                             --------->LBD16               --------->RAP2.3(1)                                           --------->ANAC58               --------->ERF1                                                --------->ANAC46        ------>NtERF2                                                        --------->ANAC58        <-----------HVH21                                                   <-------MYC3        ----------->RAV1(1)                                                 ------->MYC3<------------       ----------->HVH21  --------->HSFB2a(2)        <------ZmHOX2a(2)      <---------LBD16       --------->ANAC46   <---------LBD16           <---------ARR11(3)     --------->ANAC46<---------       <---------ETT(1)   <---------HSFB2a(2) ---------->DOF2      <----------DOF2--------->HSFB2a(1) ------DAG2  --------->ARR14(2)          <---------ARR11(3)    --------->ANAC58 <---------ARR14(2) -------DOF2 <---------ARR14(2)          --------->ARR11(3)    --------->ANAC58 --------->ARR14(2) ----At4g35610<---------ATERF1(1)     --------->ANAC55(2)      --------->ANAC46 <---------GLK1(2)  --   tttttatctccgacagagccgccaatttctcggaaattttaagtatctcaaagagatcaaaaaccacgacttttcacacgcggaatctccggagagacaa  7021800                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                                   <---------ANAC55(2)                           <---------MYB52(1)                                      --------->ANAC55(2)                         <---------ANAC58                                        <-----------GT1                         <---------ANAC46                                ----------->RAV1(1)                         <---------ANAC58 <----------DOF2                ============================           --------->TOE2(3)         ------->TEIL                        --------->ANAC46   ---------           --------->TOE1(3)     <---------TOE2(3)      <---------At4g35610 ---------->DOF2 <-------- ---------WRI1        --------->GLK1(2)<---------ARR11(3)               --------->MYB46(3)  <-------- -ID1 --------->SPL7 <---------GLK1(2) --------->ARR11(3)              --------->ANAC58     --------- -------->DOF2   ---------->DOF2<-----------GT1     <-----------HVH21  --------->ANAC58   <----------   acaaagcatacgaccttaaaaaagattccgtttttaacgaagctctttatctcgagtcagataattcaaaaacacccacaaagttacttgattcagctgc  7021900                                                                   --------->HSFB2a(2)                                                                   <---------HSFB2a(2)                                                                --------->GLK1(2)                                                          ---------->DOF2                                                        --------->YAB1                                                     --------------->AGL15                                                     <---------------AGL15                                                     <---------HSFB2a(2)                         <---------ANAC46           ----------------->AGL3  <----------DOF2       <---------ANAC46            <-----------------AGL3 =RAV               <---------ANAC58                ----------------->AGL2 >ZAT2              <---------ANAC58             --------->GLK1(1)<---------LBD16 -ZAT2           <----------DOF2             <---------ANAC46  <---------GLK1(1)     <----------ID1 -At4g35610 <----------DOF2                --------->CCA1(2)   --------->GLK1(1)     ----------->GT1 >At4g35610<---------ANAC58           ---------->DOF2--------->HSFB2a(2)         ---------->DOF2 -RAV1(2)  <---------ANAC58         <---------ATHB12<-----------------AGL2   ------->TEIL   tcttctttgttttgctttcctttcttggggggaatcaaatcaaagagacgggtttctataaaaagaaatctggaaaatgaatcgaaagagaaaaacaaaa  7022000                                                                                              -------                                                                                             ------->GAMYB                                                                                            <--------                                             ---------->DOF2                                ---------                                      --------->TOE1(2)                                     <--------                                     ===================bZIP_DOF                            <--------             <------ZmHOX2a(1)       ===================bZIP_DOF                --------->DEAR3(1)      <---------WRKY18(1)            ==========================MYC_MYB          ----------->HVH21   <---------ICU4                    --------->O2                 ---------->DOF2           <--------   <------ZmHOX2a(1)                 <---------O2              --------->ETT(1)--------->At4g35610  - <---------TOE2(3)                   <---------TGA1a   ------->GAMYB           <---------At4g35610--- <---------TOE1(3)                   --------->TGA1a----------->RAV1(1)>>>>>>>>>NAM    <------ZmHOX2a(1)   cttaaggatgaccaaggacaatcgaagattaagactcaaacgtgagagaaagagcaacagagttgtcggaaagggatgatcagcgaccaggacaactacc  7022100         ---------->DOF2      --------->At4g35610  <---------ARR11(3)  --------->ARR11(3) ->P  <---------At4g35610                          <-----------GT1                 --------->AHL20(2) -MYB52(2)                                         ---------->ID1             <---------YAB1 >MYB46(3)                                 <----------DOF2      <----------DOF2<---------AHL20(2) -MYB111(2)                           ------>ZmHOX2a(1)    <----------DOF2   <---------AHL20(2) -MYB55(2)                      <<<<<<<<<TBF1     <-----------GT1   <-----------GT1<---------AHL20(2) -MYB111(1)              <---------DAG2    <---------DAG2<------------------------ANAC81 <-----------GT1 -------->DAG2    <------ZmHOX2a(1)   <------------------------ANAC81    <---------RVE1(1)       <--- ------->DOF2  *TSS      <----------DOF2 <------------------------ANAC81<---------MYB52(1) ----------   aaaaggtctgctaaagcacaggaacagctttttcttcttcctctcctttttttttccttctcttttctttttccgatatttttatttttttatacctatt  7022200                ------>NtERF2                ----------->RAV1(1)                <---------DDF1                <---------RAP2.6(3)                           <---------YAB1               --------->RAP2.6(2)                            --------->ICU4              --------->DEAR3(2)                        <---------TOE2(3)                   ---------          ---------->DOF2   --------->ANAC58        --------->TOE2(3)                       ---------   <---------YAB1           --------->ANAC58  --------->AHL20(2)                     <----------DOF2 ------AHL20(2)--------->DEAR3(1)             <---------AHL20(2)       ------>ZmHOX2a(1)    --------- ------->AGL1<---------At4g35610             --------->AHL20(2)--------->ATHB51   <-----------GT1   tagttatgctcatgaagccgacatattcactagcaaactggccacgatttaatttcttaatgttattattgtcctctaaaattttaactttgacacacaa  7022300                                                                        <-----------GT1          ----                                                                       <---------YAB1          ------                                                                     <---------ICU4           <------                                                                     --------->YAB1           <------      <----------DOF2        <---------CCA1(2)                      <---------YAB1            -------      <---------DAG2       --------->TOE2(3)                        --------->ICU4          --------- >ANAC58             <----------DOF2--------->YAB1             ----------->GT1         --------->YAB1 >ANAC58      <---------ZAT6------>ZmHOX2a(1)                 <---------TOE2(3)    --------->AHL20(2) >ANAC46  <---------YAB1 ---------->ID1                       <---------TOE1(3)    <---------AHL20(2)   aaaaacaactttattagtgttttctttttccttatctctgataatttgataagtttttttcattaaggttattattactgtatcatttattgtaatactt  7022400                                                                             <---------ANAC46                                                                             <---------ANAC58  <---------TOE2(3)                                        ----------->GT1   <---------ANAC58 ----->ATHB12                                           <---------STY1(2)   <-------TEIL --------->AGL15                                --------->At4g35610         --------------->AtSPL3 ---ANAC55(2)                                   --------->ZAT2              <---------------AtSPL8 -----------AG                                  <---------At4g35610    ---------->DOF2 -->ANAC55(2)                        <----------ID1     --------->STY1(2)   --------------->AtSPL8 >ICU4                         ----------->GT1  <---------ZAT2<---------AHL20(2)<-------TEIL      <--   gattagggataacatagatttataggggatgtattgaaaaaaacaaactaagctgactagctagttatttgatcaaagtgcgtacatatatgtttggcaa  7022500                                                                          --------->ICU4                                              <---------ICU4              <---------YAB1                                             --------->ICU4             --------->YAB1                                             <---------YAB1            <---------YAB1                                           --------->YAB1        <---------YAB1                                <---------ARR11(3)            <---------AHL20(2)                    --------->AHL20(2)    <-------TEIL       --------->AHL20(2)                   ---           <-----------GT1      --------->ARR11(3)       <---------AHL20(2)                       <-- <----------DOF2    <---------AHL20(2) <------ZmHOX2a(1) --------->AHL20(2)           ---------->DOF2 -------ARR11(3)   --------->AHL20(2)<---------TOE2(3)   <---------AHL20(1)<---------ICU4      <-----   tttcttttgtagttaactatatttaattcagatagattttaggattcataattcatcaaaaaattttatgattttcattattttgaacaaaagcatttta  7022600  Previous    Next  AGI:  At5g20730.1    Description:  NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription factor. Identical to Auxin response factor 7 (ARF7) [Arabidopsis Thaliana] (GB:P93022;GB:O24411;GB:P93023;GB:Q8RXZ7;GB:Q9LCZ5;GB:Q9SBK4;GB:Q9SYQ6); similar to ARF19 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT1G19220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65203.1); similar to auxin response factor 1 [Cucumis sativus] (GB:BAD19061.1); similar to Auxin response factor 16 (GB:A3B9A0); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA-ARF-dimerisation; (InterPro:IPR011525); contains Range:  from: 7016472    to: 7022115    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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