Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 ------>ZmHOX2a(1)                             ------>ZmHOX2a(2)                           <---------ARR14(2)       --------->TOE1(3)                           --------->ARR14(2)       --------->TOE2(3)                       ----------->RAV1(2)    <---------At4g35610                      --------->GLK1(2)       --------->At4g35610                      ------->TEIL<---------CCA1(2) <---------MYB59                     <---------ARR14(2)      --------->ANAC58            ----------->GT1                     --------->ARR14(2)      --------->ANAC58         <---------ICU4             ---- >TOE2(3)          --------->ANAC58      <---------ANAC55(2)       --------->YAB1             ------- >TOE1(3)          --------->ANAC58  --------->ARR11(3)    --------->AtMYB61     --------->AHL20(2)   ctaaattgaactcaaattcacaagaacctgatcctcatatatcatgtaagctaacctaaaaccataccataagaattgcaaaaaaaaatgtttcaatttt  6892000                                                                       <XXXXXXXXXXXXXXXXXXXXMIR861-5P                                                                      ----------->GT1                                                                      <---------ANAC46                                          <---------REM1(1)          <---------TOE2(3) <----------ID1               ---------->DOF2                 --------->ARR11(3) ------>DOF2            <---------At4g35610                  <---------CCA1(2) <-----------GT1------- -->YAB1                --------->At4g35610      <------NtERF2<---------ARR11(3)  <---------AtLEC2   aaagcgagaaaccttgtccatattgcagataacaaaggcgagagaagtagcgccgataagcttatatctctgaggtatatttttccatggaggccaattc  6892100                                                                               <---------At4g35610                                                                               <---------HSFB2a(1)                                                                               --------->HSFB2a(1)                                                                               <---------HSFC1(2)                            <---------LBD16                                    --------->HSFC1(2)                       --------->ARR11(3)                            ------>ZmHOX2a(1)                       <---------ARR11(3)                            <----------DOF2                 --------->SPL7                                    ================HOX2a_HOX2a               <---------SPL7                  <----------DOF2     ------>ZmHOX2a(2)               <---------SPL1(2)             <---------ANAC46     =================HOX2a_HOX2a              <---------ANAC58          --------->At4g35610       <------ZmHOX2a(2)              --------->ANAC55(2)       --------->ZAT2           <---------ARR11(3)              <---------ANAC58  <---------ARR14(2)               --------->ARR11(3)             --------------->AtSPL3     <---------ZAT2           <---------ARR14(2)             ----------------->AGL1     <---------At4g35610      --------->ARR14(2)           <---------ARR14(2)   --------->ARR14(2)              <------ZmHOX2a(1)    <-----------GT1 -->GLK1(2)--------->ARR14(2)  <------ZmHOX2a(1)     --------->ARR11(3)     <------ZmHOX2a(1) -------   tgttcaaaacccgtttccgtactgagaacttcaggaatcggaagctggggtttagggtcttcgataggatcctttggaggaagcttcttactctctctga  6892200                                                             <------NtERF2                                                            <---------MYB46(3)                                                           --------->ALFIN1                                                           <---------ANAC46                                                         <---------MYB46(3)                                                         --------->MYB55(2)                                                        <---------AtMYB61                   <---------ZAT18                      <---------DEAR3(1)                 <------NtERF2                          --------->ALFIN1                 --------->ATERF1(1)                  <---------MYB46(3)                --------->LBD16                      <---------AtMYB61        --------->ANAC46               <---------ANAC58                      --------->ALFIN1        <---------LBD16               <---------ANAC46               <---------ARR14(2)           <---------ZAT14               <---------ANAC58               --------->ARR14(2)           --------->ARR14(2)               <---------DEAR3(1)             --------->ARR11(3)           <---------ARR14(2)         <---------ALFIN1                    <------ZmHOX2a(1)          <---------ANAC46--------->DAG2 ---->HVH21   <---------LBD16   --------->ATHB12  <---------AtMYB61   ----------->GT1<------ZmHOX2a(1)   ctcgttcagtaccactggcggagcacttaacccttgatttgataagaggattttggtggtggtgggggaagatggtgtatacggagaggaaaggttgttt  6892300           <------ZmHOX2a(1)                                    <-----------HVH21        --------->CCA1(2)                                    <------MYB46(1)     ----------->ARR10            <---------PCF2             <------MYB83  <---------ANAC58                <---------ANAC58          <---------AtMYB61  <---------ANAC58             <---------ANAC46    --------->ANAC58                         ---------  <---------ANAC46        --------->ATHB12  <--------P   <-----------RAV1(1)            >>>>>>>>>TBF1 <-------TEIL--------->At4g35610  <---------ANAC58 --------->ANAC58        <------ZmHOX2a(1)---------   atgtgcgtagataggagatgagaagaagtgattgtggggtctcaaggtaagtctcgccattgttggtgtcagagagaggagaagaaggaagaagaagcaa  6892400                   <---------ANAC58                   <---------ANAC46                   <---------ANAC58                                             --------->ALFIN1                   ----------------->AGL1                                       <-----------RAV1(1)                <---------WOX13(1)                               <------ZmHOX2a(1)              --------->ATHB12                               <---------MYB46(3) <---------ANAC46              <---------ICU4                                --------->ALFIN1    <---------ANAC58              <--------ATHB1                          <---------ARR14(2)        <---------ANAC58             --------->ICU4       *TSS                --------->ARR14(2)    <---------ANAC58     ---- >ANAC58     <---------YAB1       >>>>>>>>>TBF1      <------ZmHOX2a(1)      <---------ANAC58  ------- >ANAC58   --------->YAB1      >>>>>>>>>TBF1      <------ZmHOX2a(1)       --------->ARR11(3)<--------   aatggaaaatgaagaatgattgcctgaattgaagaagaagaagagggagagaggaggacacggtggaggaagaagagagcttgtgtggctctcactgtgg  6892500                       <----------DOF2                      <---------DAG2                <---------ANAC55(1)                  --------->TCP15(1)                <---------ANAC55(2)                  --------->TCP20                   <---------ANAC58                 <---------TCP23                    <---------AtLEC2                <---------MYB46(3)                  --------->ANAC55(2)         <---------YAB1<---------DAG2               <---------ANAC46  <------------CBF<---------PCF2                    <---------ANAC58  --------->ZAT14<---------TCP15(2)             <----------DOF2         <---------DAG2             <- ----->ZAT18 <-----------RAV1(1)          --------->HSFC1(2)            <----------DOF2  <---------ICU4 -->ALFIN1--------->ATHB12                <---------HSFC1(2)       <-----------GT1   <---------AHL20(2) ---RAV1(1)<------------CBF            ---------->DOF2  <---------GLK1(2)           <---------AHL20(2)   gcagtattgtcttcattgtgggtcccttttccttctgtatcaaaagcttcctttgcgtgattctcttgtttacacttttttttttttttaatgactacta  6892600                                                                                 --------->MYB46(3)                                                                                >>>>>>>>>>>>>>>>>LFY                                               --------->ATHB12                --------->ANAC46                                              <---------YAB1       <---------AHL20(2)                                              --------->ICU4      <---------AHL20(2)                                          --------->ARR11(3)      --------->AHL20(2)                              <---------AHL20(2)                  --------->AHL20(1)                  --------->ATHB12        <---------ARR11(3)      <---------AHL20(1)                  <---------ICU4         --------->YAB1           <---------ARR11(3)                --------->TOE2(3)       <---------YAB1            --------->ARR11(3)   <---------MYB52(1)      ----------->GT1         --------->AHL20(2)      <------ZmHOX2a(1)--------->AHL20(2)   <---------ICU4<---------YAB1         <---------TOE2(3)        --------->AHL20(2)  <---------ZAT6 <---------AHL20(2) <---------YAB1      <---------TOE1(3)----------->GT1     <---------At4g35610 --------AHL20(2)--------->ICU4<---------AHL20(2)   <---------TOE2(3)  <---------AHL20(2)   tataaaaattgcaaaaaacattattagagcattttaatttttaagataatgatttaggatagtataaatatatttatatagcagccactgttagtaattt  6892700                  --------->ICU4             ----------->GT1           --------->ICU4         --------->ATHB51         <--------HAHB4         <---------ICU4         <--------ATHB1         --------->YAB1         --------->ATHB12        --------->AHL20(2)           ------>MYB46(1)              <---------AHL20(2)        <---------ATHB51             ------>MYB83            ----------->GT1        <---------ATHB12 <---------REM1(1)        --------->AHL20(2)              <---------ANAC58        --------->ICU4<-----------RAV1(1)        --------->AHL20(2)               <---------ANAC58      --------------->AGL15        <---------MYB59<---------AHL20(2)            <---------AHL20(2)      <---------------AGL15       ----------------->AGL1 --------->AHL20(2)     <-----------GT1   gtcaaaaacaataattagtaatatttgttgtagactaccaaattgtgccaatttaaaaaaaaaatgaaaaaattgtgccaatttacttgtccatagctaa  6892800                                                                                                    <                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                                                         <---------ARR14(3)                                                                                         --------->ARR14(3)                                                                                         --------->ARR11(3)                                                                                         <---------ARR11(3)                                                                       <---------AHL20(2)<---------ARR14(2)                                                         <------ZmHOX2a(2)               --------->ARR14(2)              <-----------RAV1(1)                       --------->ARR11(3)    <-----------RAV1(1) <--         <----------DOF2                     <---------AHL20(2)       --------->AHL20(2)<---------CCA1(2) --------->ARR11(3)          <---------At4g35610        <---------ARR11(3)   ------->TEIL<---------AGP1 <---------ARR11(3)     <---------GLK1(1)   <---------AHL20(2) ----------->RAV1(1)  <---------REM1(1)   taagatgttatcttttctggtgctagagttctgcttcttaagtttttttatttaagaagatcatacaacatataaaatgaatgttgttgtagatcttgat  6892900  Previous    Next  AGI:  At5g20380.1    Description:  transporter-related. similar to ANTR2 (anion transporter 2), organic anion transmembrane transporter [Arabidopsis thaliana] (TAIR:AT4G00370.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ59971.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 6887727    to: 6892434    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g20390.1    Description:  beta-1,3-glucanase, putative. similar to BETAG4 (BETA-1,3-GLUCANASE 4), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G20330.1); similar to BG5 (BETA-1,3-GLUCANASE 5), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G20340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63388.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781) Range:  from: 6892833    to: 6894197    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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