Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------MYB46(3)                                        <---------TOE2(3)                                     <---------WOX13(1)     --------->ANAC58 --------->YAB1                                  --------->AHL20(2)        --------->ANAC58<---------YAB1              <---------TOE2(3)   <---------AHL20(1)   <------MYB46(1)    --------->YAB1 ---------WOX13(1)                --------->AHL20(1) <--------P  <---------ATHB51 ------YAB1   <---------YAB1  --------->AHL20(2)<-----------RAV1(1) <---------TOE2(3) ------AHL20(2)           ---------->DOF2<---------YAB1<------MYB83 <---------YAB1              ----- ----->AHL20(2) --------->ARR11(3)<---------AHL20(2)<-------GAMYB--------->ICU4<---------YAB1   <----   taattgatgacataataagatagtttcccaaagtaattaattgatgatatatgtggttggataagaaattatggtattatcatgtttgcctctcaaattt  6828600                                                                                 --------->ARR11(3)                                                                                 <---------ARR11(3)          <---------AHL20(2)                                                    <---------GLK1(1)          --------->AHL20(2)                                                    <---------RVE1(1)          --------->YAB1                                                        --------->GLK1(1)      --------->AHL20(1)                                                       --------->ARR14(2)      <---------AHL20(1)                                                       --------->ARR11(3)      --------->AHL20(2)                                                       <---------ARR11(3)      <---------AHL20(2)                                                       <---------ARR14(2)  --------->AHL20(2)                                                         --------->LBD16  <---------AHL20(2)                                                        <---------HSFB2a(2) <---------AHL20(2)          ----------->GT1                                --------->HSFB2a(2) --------->AHL20(1)          <---------At4g35610                        <----------DOF2 --------->AHL20(2)          --------->At4g35610                     <-----------GT1             <--- <---------AHL20(1)         --------->ANAC58<-----------GT1         <-----------GT1 <---------HSFB2a(2) ---->AHL20(2)     <-------TEIL      ---------->DOF2               <---------AHL20(2)  <---------GLK1(2) -----AHL20(2) <-------TEIL --------->ANAC58<---------WRKY18(1)   --------->AHL20(2)--------->HSFB2a(2)   aaatttaattaattatatacatacacgagtaagctaaataaaagtttgaccacatttcatatgaagaattttatctttccagatatctagaatttgtttt  6828700                                                              <-----------GT1                                                     --------->ANAC58                            --------->ANAC58         --------->ANAC58         --------->ATHB12   <---------ANAC55(2)      --------->ANAC46--------->YAB1 <---------REM1(2)          --------->ANAC58       <-----------GT1 <-----------HVH21 <---------ZAT14           <---------LBD16       <---------AHL20(2)------>MYB46(1) --------->ZAT14         <---------SPL7   ----------->GT1  <----------DOF2 --------GT1           <---------------AtSPL3    --------->AHL20(2)------>MYB83     <---------At4g35610   ctctacacagttcattgaagaaaacatagtacggaagagaccagaggttaattaaacgacactttaacctatcacgagagagactgagatgatcaaatca  6828800                                                                                <---------ANAC55(2)                        --------->ANAC58                                        <---------ANAC58                        --------->ANAC58                                        --------->ANAC55(2)                        --------->AtLEC2                                      <-----------GT1                       <-------MYC3                                       <---------AHL20(2)                    --------->YAB1                                        <---------AHL20(1)                   <---------ATHB12                                       --------->AHL20(2)              --------->TOE2(3)  <---------ZAT6                     <---------DAG2<---------MYB52(1)         --------->AHL20(2)---------->DOF2             <---------TOE2(3)  --------->AHL20(1)     --------->AHL20(2)------->MYC3       --------->ANAC58          <----------DOF2 ---------->DOF2 --------->WOX13(1)       --------->ANAC58       <-----------GT1<---------ANAC58   aatgaaagaaaataaacatcaatcacatgcaaagagtgttcattaagcaaaatcactaagtttgtttttactttattttattacgttacttcaagttttt  6828900                       --------->DAG2                                  --------->ANAC58         -----               <---------ZAT6----------->GT1                       --------->ANAC58           -------               ----------->GT1                                     --------->ANAC58           -------  <-----------GT1     ---------->DOF2          <---------ANAC46  ---------->DOF2----------->HVH21 <-----------GT1--------->At5g28300        <---------------------WRI1  --------->ANAC58<---------ZAT18   tttttatcttcttggtactgtaaaaaaaggagagaaaatagagttggctatgtgtaataagcgaaccaaaagcaagccttccatgactgtgccctcaaga  6829000    <----------DOF2 ----->DOF2                                           --------->YAB1                    --------->TOE2(3) -->ANAC58              <-----------HVH21      xxxxxxxxxxxxxxxxxx>smallRNA(se3)         <----------DOF2 -->ANAC58 ------------>CBF---------->DOF2  *TSS   --------->WOX13(1)         <---------YAB1   aagtagctttgttttcaatcccaaactgtcaaagtctctcttcacctcaagattaatcaaaacatttctctctctatctcatcaatgttactttaaaacc  6829100                                              --------->ARR11(3)                                              <---------ARR11(3)                                              <---------ARR14(2)                                              <---------ARR11(1)                                              --------->ARR14(2)                                              <-----------ARR10                                    ------>ZmHOX2a(1)                                --------->ARR14(2)                                <---------ARR14(2)                               <---------CCA1(2)         --------->AHL20(2)                               --------->GLK1(1)   <-----------GT1                               <---------GLK1(1)--------->TOE2(3)                ---------->DOF2     ------>ZmHOX2a(1)  --------->ANAC46     <---------CCA1(2)       --------->TOE2(3)    <---------ALFIN1    <-----------GT1  ------>ZmHOX2a(1)           --------->TOE1(3)           ----   aatgctcctcttcttgttcttcatataaaccacatatcctctcctccatatcttaacaatttcatagcaaaccctaaaattgagaaagagatagagagag  6829200                                                           <---------ANAC46                                                         <---------TGA2(2)                        ---------->DOF2       ----------->RAV1(1)                 <------ZmHOX2a(2)            --------->MYB52(1)  ---------->DOF2   <------MYB83                 ====================HOX2a_HOX2a      <---------MYB46(3)            <------MYB46(1)                --------->ARR11(3)         --------->ANAC58<---------ANAC58        <---------MYB46(3)                <---------ARR11(3)         --------->ANAC58<---------ANAC58       <---------WOX13(1)              <---------HSFB2a(1)      --------->ANAC58 ----------->TGA1   <------ZmHOX2a(1)           <------ZmHOX2a(1)   <---------ARR14(2)    --------->ALFIN1   <------ZmHOX2a(1)        ----           =============HOX2a_HOX2a    --------->ANAC58 ----------->HVH21  ========================== ------>DOF2---------->DOF2   <------ZmHOX2a(1)  ------->GAMYB  <---------HSFB2a(2)<---------AtMYB61   aaagatgggtagaggaaagatcgagataaagaggatagagaacgcaaacaacagagtggtgacgttctcaaagaggaggaatggattggtgaagaaggct  6829300                                                      --------->YAB1                                                --------->ANAC46                          ------>ZmHOX2a(2)                                                --------->ANAC58                        --------->ARR14(2)                                                --------->ANAC58                        <---------ARR11(3)                                               <---------------AGL15                    <---------AGP1                                               --------------->AGL15                    <---------ARR14(2)                                              ----------------->AGL1                    --------->ARR11(3)                    --------->AtLEC2          <---------AtLEC2  <---------WOX13(1)      ------->TEIL    <------ZmHOX2a(2)                         <-----------------AG--------->ATHB12     <---------CCA1(2)   --------->ARR11(3)                    <---------ICU4       --------->ATHB12     <---------AtLEC2   <---------ARR11(3)    --------->DAG2<---------ARR11(3)    <---------YAB1     =================HOX2a_HOX2a ------>DOF2 <----------DOF2       --------->YAB1  --------->MYB52(1)   <-----------RAV1(1) ==========HOX2a_HOX2a  ---------->DOF2--------->GLK1(2)   <---------At4g35610  ------>ZmHOX2a(1)   <   aaagagatcacagttctttgtgatgcaaaagttgccctcataatctttgcaagtaatggtaagatgattgattactgttgtccttccatggatcttggtg  6829400                                                                                                    <                                                                                                    <                                                                                                    -                              --------->ANAC58                                                      -              <---------HSFB2a(2)                              <-----------GT1  ---------->DOF2    --              --------->HSFB2a(2)                      ----------->GT1    <---------AHL20(2)--------- -----------RAV1(1)           --------->ANAC58    --------->YAB1      <----------DOF2   <----------DOF2   ctatgttggaccaataccagaagttatctggcaagaaactatgggatgctaagcatgaggtaattttgctctctttttaatctaaagtttctttgtctca  6829500  Previous    Next  AGI:  At5g20240.1    Description:  PI (PISTILLATA); DNA binding / transcription factor. Identical to Floral homeotic protein PISTILLATA (PI) [Arabidopsis Thaliana] (GB:P48007;GB:Q9SQ07;GB:Q9SQ08;GB:Q9SQ09;GB:Q9SQ10;GB:Q9SQ11;GB:Q9SQ12;GB:Q9SQ13); similar to TT16 (TRANSPARENT TESTA16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G23260.1); similar to pistillata [Arabidopsis lyrata] (GB:AAF25591.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 6829044    to: 6831517    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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