Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------ANAC46                                          -----                                    --------->MYB52(1)                                          <----                                   ----------->HVH21                                            -----                                   ----------->TGA1                                             <----     ------>ZmHOX2a(2)            <-----------HVH21                                       -----------    <------ZmHOX2a(2)            <---------ANAC58                                      <-----------RAV1(2)  <---------GLK1(1)              <---------ANAC58                                     --------->ZAT2 --->ALFIN1             --------->ETT(2)   <------ZmHOX2a(1)                       <---------At4g35610 -DEAR3(1)     <---------YAB1    <---------ANAC46           <---------YAB1         --------->At4g35610   ttagagatcggaagacgatgaaagtatcgacattagcgtgacggaggaggtttgtgtttgtgaagatagcgaggtagaagacgatagctgcagggagaaa  6750700                                                                                <---------ANAC55(2)                                                                                <------MYB46(1)                                                                               --------->MYB46(2)                                                                               --------->MYB111(1)                                                                         <-----------RAV1(2)                                                                        --------->ZAT14                                                                        --------->ABI4(2)                                                                       --------->ALFIN1                                                                     <---------DEAR3(2)                                                                    <---------DEAR3(1)                                                                   <------NtERF2--------->ANAC55(2)                                                                   --------->ATERF1(1)                                                                  <---------ATERF1(1)                                                                  ------>NtERF2--------->MYB59                                                                 ----------->HVH21                                                                 <---------DEAR3(1)                                                                --------->RAP2.3(1)                                     <-----------GT1            --------->ATERF1(1)                                 --------->ATHB12              <---------RAP2.3(1)                               <---------WOX13(1)              <---------DEAR4(2) ---->HSFB2a(1)              --------->ATHB12                  <---------ATERF1(1) -----HSFB2a(1)             <---------YAB1         ------>NtERF2<------NtERF2  --------->MYB52(2) ---->HSFC1(2)          <---------ARR14(2)        --------->LBD16--------->DEAR3(1)                <- -----HSFC1(2)     <---------AtLEC2<---------WOX13(1)     --------->CCA1(2)  <--------P    --------->At4g35610 >GT1    <-----------HVH21------>ZmHOX2a(2)--------->ATHB12   <---------DEAR3(1)<------MYB83  <------   tttcttagcagtgtcccatgtgaatggatcgtgattgattaaccctgatttgccgagaagatagacggcgacggtgcaggttaggtattgaagagctgtg  6750800          --------->MYB46(2)          <---------MYB46(3)          --------->MYB111(2)          --------->MYB55(2)                               --------->At4g35610          --------->MYB111(1)                              <---------At4g35610 <---------ANAC55(2)          --------->MYB52(2)                          <---------ANAC58         --------->ANAC55(2)         <--------P                                   <---------ANAC58<---------ARR14(2)    ---------   <---------O2                                   <------ZmHOX2a(1)   --------->ARR14(2)<----------DOF2 <---------GLK1(1)     --------->ATHB12         --------->ALFIN1   <---------ANAC58    <---------ANAC46 -----ZmHOX2a(1)      <---------YAB1      <---------At5g28300      <---------ANAC58    <---------ANAC58 -----HVH21<-------GAMYB <---------WOX13(1)   <---------ANAC46    --------->ZAT18      <---------ANAC58   aggagacctgggtagttgaagtatgtgattgctaatttgttgattacggcgaggaggcttgagcagagtgcgtagccgattacgagactgcttgttgtta  6750900                                                                      ============================HOX2a_HOX2a                                                                      ------>ZmHOX2a(2)                                                                     =============================HOX2a_HOX2a                                                                     <------ZmHOX2a(2)                                                                    --------->ARR14(2)                                                               --------->CCA1(2)                    <                                                               <------ZmHOX2a(2)                   --                                                               ===================================HOX2a_HOX2a                                                              <---------ARR14(2)                   --                                                              <---------ARR11(3)                   <-                                                              --------->ARR11(3)            <--------                                    <---------AtMYB61         --------->AGP1--------->ICU4  ---------                         --------->ANAC58                    <---------GLK1(1)             ==========                         --------->ANAC58        <---------AtMYB61  <---------ARR14(2)     <------ZmHOX2a(1)                        --------->SPL7     <-----------RAV1(1)--------->ARR14(2)           ========== -->GT1                <------ZmHOX2a(1)   <---------AtMYB61 --------->GLK1(1)             ==========   attgtttgtttgaatcgaatcgagaggacgacattgttttggtttttggtggaggtttttgggagatccagatcggtgaagatgaagaagagaggatttg  6751000       ================================HOX2a_HOX2a       ------>ZmHOX2a(2)     <---------ARR14(2)     --------->ARR14(2)                            <-----------HVH21 ------>ZmHOX2a(2)                                <---------TGA1a ------ZmHOX2a(2)                        ------>NtERF2                  ------------>CBF ------->ARR14(2)                      --------->ATERF1(1)              *TSS ------->ARR11(3)                      <------NtERF2                --------->ANAC55(2) --------ARR14(2)                     ------>NtERF2<-----------TGA1--------->SPL7 -ARR14(2)  --------->KAN4(1)         <---------ATERF1(1)  <---------ANAC58 >ARR14(2) <---------KAN4(2)         <---------DEAR3(1)    <---------ANAC58 =============HOX2a_HOX2a       <------ZmHOX2a(1) --------->TGA1a<---------SPL7 ======HOX2a_HOX2a     --------------->AGL15      --------->O2 <---------------AtSPL3     <----------DOF2 =======HOX2a_HOX2a    <---------------AGL15      ===================================================bZIP_DOF   ggatctggatcggattattcagagactaattagaggaaggcgacgacttctctcgtcagtgtcttatcgtacgggacaattttgttagtaatctttttag  6751100                                         <---------YAB1                                       --------------->AGL15                                       <---------------AGL15                                      <-----------------AGL3                                      ----------------->AGL3                                      ----------------->AGL2                                      <-----------------AGL1                                   ------->GAMYB                               <---------WRKY38(1)                               <---------WRKY45                               <---------WRKY12                              <<<<<<<<<<WRKY6                              <<<<<<<<<<WRKY26                              --------->WRKY18(1)                  ----------->GT1--------->At4g35610                  <---------ZAT6 <---------At4g35610           <------------CBF   <<<<<<<<<<WRKY11         --------->AHL20(2)   <<<<<<<<<<WRKY43               --------->ARR11(3)            --------->GLK1(2)         <---------AHL20(2)   <<<<<<<<<<WRKY38              --------->YAB1        ------->TEIL <----------DOF2  <---------ANAC46<---------MYB52(2)     <-----------GT1     <---------ANAC46   tcactttgagtttaattgtggtgttaattttggtcaactcaccattaatggaagaatattaaacatattgattttgtctgtgtgtatgtagagaattttt  6751200                                                                          <---------AtLEC2                                                                          <---------ANAC58                                                                    <---------YAB1                                                               <--------ATHB1                                                               --------->ATHB51                                                               -------->HAHB4                                                               --------->ATHB12                    <---------ANAC46                           <---------ICU4               <---------ICU4                           --------->ANAC58  <---------ANAC46               --------->ATHB12                         --------->ANAC58  <---------ANAC58               -------->ATHB1                     --------->ICU4    <---------TOE2(3)               --------->ATHB51               --------->ZAT14 --------->AHL20(2)              <---------ATHB51                <---------ZAT14 <---------AHL20(2)              <---------AHL20(2)              <---------ZAT18 --------->ICU4                   <-----              <---------YAB1                  --------->ZAT18 <---------ATHB12                <------              --------->ICU4              <---------WRKY38(1) <---------ATHB51      <---------YAB1   gtttgtttgtagagaaattattgtgtattttggacataaactagtcaatgcactaattaagcaaataattgagattgcatgtagtcattgttgagattca  6751300                                                                                    ---------->DOF2                                       --------->AHL20(2)                      <xxxxxxxxxxxxxxxxsmallRNA(s)                            --------->AtMYB61                                  ----------->RAV1(1)                     --------->At4g35610                                 --------------->AtSPL3            <---------TOE2(3) ------>MYB46(1)                            --------------->AtSPL8            <---------TOE1(3) ------>MYB83                          ----------->RAV1(2) <------------           <-----------GT1 --------->MYB46(3)                       --------->At4g35610 -------------  <----------DOF2    <---------At4g35610   --------->YAB1           =======================RAV ------GT1 --------->MYB52(1)--------->MYB52(1)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -TEIL<---------TOE2(3)    --------->DEAR3(2)    <---------AHL20(2) <---------At4g35610 -------------   ctctcttttagattaacgatatgtgctgaaccaacgcttaaataaacataataaatctaaaattgttgtcatctggctgtacaacacaaagctgtacaaa  6751400                                                     ------->TEIL                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            x                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                   xxx                  <---------WOX13(1)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          -----               <---------YAB1                    <---------------AtSPL3                         <----              ------>ZmHOX2a(2)                  --------------->AtSPL8                        <-----             <---------At4g35610                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <-----             <------ZmHOX2a(2)                 <---------TOE2(3)                              <xxxxxx            ------->TEIL                 <---------AHL20(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <-----------ARR10            <---------AHL20(1)          <---------YAB1         xxxxxxxxx            <---------ARR14(2)           --------->AHL20(2)  <---------LBD16    <xxxxxxxxxxxxxxxxxxxx       <-----------GT1                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->At5g28300<xx       --------->MYB52(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ----------->GT1 -------  <---------TOE2(3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->DAG2    <-------- ---AtSPL8  <---------AGP1       ----------->GT1<---------ANAC46    --------->AHL20(2)    ----------- -->AtSPL8  --------->GLK1(2)    <---------ANAC46<---------------AtSPL8  ---------->DOF2--------->MYB52(1) -->AtSPL3  --------->ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->YAB1---------->DOF2xx   attttagattaacggatctgattgtttacaataagtcgtataaaaaatttaggtgtacgttttttcggaatattataaagctgtaaaaaagaacggtacg  6751500    --------->TOE2(3)    --------->TOE1(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ---->HSFB2a(2) -----HSFB2a(2) ----TOE1(1) ----TOE2(1) xxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxx>smallRNA(i2)                     --------->GLK1(2) xxxsmallRNA(le3)    ----------->GT1     <----------DOF2 xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ZAT6 -->SPL7      --------->DAG2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->DAG2 -SPL7       ---------->DOF2 <---------DAG2  --------->YAB1    ----------->GT1         ----------->GT1 ---->AtSPL3--------->YAB1   <----------DOF2<---------YAB1     <---------ANAC46        --------->YAB1 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-----------GT1 <----------DOF2      ---------->DOF2       <-----   agaaaaccttacaataaaagtgagagtaaaactttttgtaacacttttgataatctttttgtgttttgtataaaaaaaagctatacaaattgtaatactt  6751600  Previous    Next  AGI:  At5g19980.1    Description:  integral membrane family protein. similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT1G76340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65603.1); contains InterPro domain UAA transporter (InterPro:IPR013657) Range:  from: 6749707    to: 6751072    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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