Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->ANAC46                                    ------>ZmHOX2a(2)      --------->ARR14(2)                                  <---------ARR11(3)    --------->HSFB2a(2)------>NtERF2                              --------->TOE2(3)--------->ZAT14            --------->RAP2.6(2)                              <---------ANAC58 <---------ZAT14--------->ANAC58                     --------->ANAC58      --------->AtMYB61  --------->ANAC46                <---------ZAT6<---------ANAC58----------->RAV1(1)    ---------->DOF2     <----------DOF2 --------->ANAC58     --------->MYB46(3)  --------->ANAC58       --------->TOE1(2) ---DOF2       <---------TOE1(3)  --------->ARR11(3)    <---------HSFB2a(2)--------->LBD16         >>   ttcattcctttacacttagggttacgacatttccttgatcttgaaccacaacacaggtcgagaaacgcaattgaagccgcgaaaaaaactgcgaatgcga  6356700                                                            <---------ANAC46                                                          <---------ZAT2                                                          --------->ZAT14                                           <---------ARR11(3)                                           --------->ARR11(3)                                         <---------YAB1   <---------ZAT14                                      --------->ICU4      --------->ABI4(2)                                      <---------YAB1      --------->ZAT2                                    --------->YAB1     <---------ANAC58           --------->ATHB12                            ========================HOX2a_HOX2a   ------>ZmHOX2a(2) <---------YAB1               =====================================HOX2a_HOX2a   ===============================HOX2a_HOX2a               <------ZmHOX2a(1)   --------->ICU4      <---------ANAC58<------ZmHOX2a(1)   --------->ALFIN1           --------->LBD16  ------>ZmHOX2a(1)------>ZmHOX2a(2)----------->HVH21  --------->ICU4         <---------LBD16<-----------GT1--------->YAB1 <---------DEAR3(1)         <---------YAB1  <--- >>>>>>>TBF1<------NtERF2 ----------->RAV1(2)=================================HOX2a_HOX2a <------ZmHOX2a(1)   agaagaacgaagccggaggagggatttttcctgagggatgatgatgatcttcatcttcggtgctgtgatcggaggagaagaagatgattagaggagggag  6356800                                                                                                 <---                                                                                               <-----                                                                                              <------                                                                                            ---------                                                             <---------TOE2(3)            <---------HSFB2a(1)                                                             --------->DAG2               --------->HSFB2a(1)                    <---------WOX13(1)              <------ZmHOX2a(1)                    <---------KAN4(2)                  <---------MYB46(3)            --------->CCA1(2)                      <------ZmHOX2a(1)                  --------->ATHB12            --------->CCA1(2) --------->CCA1(2)   <------ZmHOX2a(1)    <------ZmHOX2a(1)                     <------ZmHOX2a(1)  <---------TOE1(3)    --------->ALFIN1 ---ZmHOX2a(1)   <---------YAB1      <------ZmHOX2a(1) --------->ALFIN1        <------ZmHOX2a(1)-----   gagagaggagagggagatggtgattgaagggaaatgagaggagaggagagataaggagtggataaggtatgagaagtaagaggagaggaggaatgtgccg  6356900                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                             <-------                                                                                             <-------                                                                                           <---------ANAC46                                                                                           <---------DEAR3(1)                                           --------->At5g28300                            <---------LBD16                                         <---------DEAR3(1)                               <------NtERF2                                        <------NtERF2                                   <---------RAP2.6(2)                                       ------>NtERF2                                    <---------DEAR3(1)                                      ----------->HVH21                                 <---------RRTF1(3)                                      --------->At1g77200                               <---------RAP2.3(2)       <---------TOE2(1)              --------->DEAR3(1)                               --------->At4g35610       <---------TOE1(1)             --------->DEAR3(2)                           --------->ATHB12     <------ZmHOX2a(1)               <------NtERF2                               <---------YAB1<-----    <----------ID1                   --------->ATERF1(1)                   <------ZmHOX2a(1) <------NtERF2 ---NtERF2                           --------->RAP2.3(1)                   ========================== ----ANAC46                         <---------ATERF1(1)                    ========================== ---LBD16        <------ZmHOX2a(1) <---------DEAR3(1)                   ============================= >ALFIN1        <---------YAB1     --------->DEAR3(1)                   ============================= ---->LBD16<------ZmHOX2a(1)--------->ETT(2)     --------->ATHB12       <------ZmHOX2a(1)<---------RAP2.3(1)   gagaagaggacgaggattaggattaagaggtcgagagtcgccgacggtgaatgtttgcagagatggagagaagaggaggagttttgattagcggcggatc  6357000                                                      <---------ANAC46                                                      <---------DEAR3(1)                                                     <---------At4g35610                                                     <---------LBD16                                                     <---------ABI4(1)                                                     <------NtERF2                                                     --------->At4g35610                                                     --------->ATERF1(1)                                                    <---------ATERF1(1)                                                    <---------ERF1                                                    <---------RRTF1(1)                                                    ------>NtERF2                                                    <---------ORA47(2)                                                    <---------RAP2.3(1)                                                   <---------RRTF1(3)                                                   <---------DREB2C(2)                                                   <---------RRTF1(2)                                                   <---------RAP2.3(3)                                                   <---------RAP2.6(2)                                                   <---------DEAR3(1)                                                   <---------ATERF1(2)                                                  --------->ATERF1(1)                                                  <------NtERF2                                                  <---------ABI4(1)                                                 <---------ATERF1(1)                                                <---------DEAR3(1)                                             <---------ANAC46                                             --------->ALFIN1                                           <---------MYB46(3)                                          --------->ALFIN1                                          <---------DEAR3(1)                                          <---------AtMYB61 ------HSFB2a(2)                        --------->MYB55(2) ------HSFC1(1)                         <---------MYB46(3) ----->HSFB2a(2)                       <---------AtMYB61 ->ZmHOX2a(2)                          <---------DEAR3(1) -->ARR14(2)                           --------->ALFIN1 -->ARR11(3)                          <---------ABI4(1)    <------ZmHOX2a(1) -->GLK1(2)                           <-------GAMYB--------->ATERF1(2) ---ARR14(2)                          <------NtERF2<---------RAP2.3(2) ---AGP1 <------NtERF2               <---------MYB46(3) --------->ATERF1(1) --ARR14(1)                         --------->ALFIN1<---------DEAR4(2)                             <- --CCA1(2)                          <---------DREB2C(2) <------NtERF2                              <- -ZmHOX2a(2)--------->ALFIN1        <---------DEAR3(1)--------->ALFIN1                            <-- ==HOX2a_HOX2a                   --------->ANAC46<---------RAP2.3(1)                          ------- =HOX2a_HOX2a   <---------MYB46(3) <---------ABI4(1)<---------RAP2.6(1)   --------->ALFIN1   <------ZmHOX2a(1) =HOX2a_HOX2a  --------->ALFIN1  <---------DEAR3(1)--------->ALFIN1     --------->CCA1(2) <------ZmHOX2a(1) ==HOX2a_HOX2a <---------AtMYB61<---------LBD16--------->ATERF1(1) <------ZmHOX2a(1)   <------ZmHOX2a(1)   tagaagaagggggcatggtggtggaattgtcttctacggcggtggtggtggaggcggcggaggagaagaggaagagatggagcatgttaggaggaggacg  6357100                                                           <---------AHL20(1)                                                           --------->AHL20(1)                   -----       <---------MYB52(1)                                  <---------AHL20(2)                  ------      <---------DEAR3(2)                                   --------->AHL20(2)                 <------    <---------ANAC46                                      --------->AHL20(2)            --------->AHL20(2)   <------NtERF2                                          <---------AHL20(2)            ----------->TBP  ------>NtERF2                                       --------->AHL20(2)                <---------AHL20(2)  <---------MYB46(3)                                  --------->AHL20(1)              ----------->TBP --------->ALFIN1                                     <---------AHL20(2)             --------->AHL20(1) --------DEAR3(2)                                    --------->AHL20(2)              <---------AHL20(1) --------MYB46(3)                                    <---------AHL20(2)             --------->AHL20(2) -------DEAR3(1)                              --------->HSFB2a(2)          ========================== -->SPL7    <----------DOF2       ------->TEIL<---------HSFB2a(2)          <----------DOF2   --------   acggtggccggtttcttttacatataagtctctgtgtatgtataggttttggaaattaaattaaattttgaagaattctttgtgaaatatataaataccg  6357200          --------->TGA1a          <---------O2       --------->TGA2(2)      <-----------HVH21      <-----------TGA1     --------->ANAC55(1)     --------->ANAC46     <---------ANAC55(2)                                                   <---------WRKY18(1)     --------->ANAC58                                                     ----------->HVH21     --------->ANAC55(2)                                                  --------->ETT(2)     --------->ANAC58                                            <---------DDF1    <-------TEIL                                                 ------>NtERF2 ---->LBD16                                                      <---------RAP2.6(3) ----->GT1<---------TGA1a                                       <---------ETT(1) ---LBD16 --------->O2<---------MYB111(1)                --------->DAG2 <---------ANAC58 ===================bZIP_DOF                            ---------->DOF2 <---------ANAC58 ->MYB52(1)      ----------->GT1   <---------AHL20(2)--------->YAB1 <------------CBF          <------ZmHOX2a(1)   gaaaaatacgtcacgagagaagtaactactattcgatttttttttttttaaacaagaataaagttgccgacattgctcgaccgatagaatgaagtaggaa  6357300                                                                      <-----------ARR10                                                                      --------->GLK1(2)                                                                      <---------ARR11(3)                                                                --------->AHL20(2)                                                               --------->AHL20(2)                            --------->ANAC58                  <---------YAB1                            --------->ANAC55(2)            <---------YAB1  --------->ANAC46                            --------->ANAC46            --------->ICU4--------->ARR11(3)                            --------->ANAC58     <---------ANAC46  --------->AHL20(2)                        <----------DOF2          ----------->GT1<---------AHL20(2)  <---------YAB1             --------->GLK1(2)              <---------ZAT6 <---------AHL20(2)   <------------CBF   <-            <---------GLK1(2)     --------->YAB1 <---------ANAC55(2) --------->RVE1(1)           <---   tttcttctacagaagaatctctgtttctttacgaaattatagcttagtgttatgtgaaatttttattaaaaaaatctacacaaattgtgaatgcaaaaac  6357400                              --------->ATHB51                             --------->ICU4                             <---------YAB1                             --------->AHL20(1)                             <---------AHL20(2)                             --------->AHL20(2)                          --------->AHL20(2)                          <---------AHL20(2)                       <---------AHL20(2)                       --------->AHL20(2)                      --------->AHL20(2)                     <---------YAB1                   <---------ICU4                   --------->ATHB51                   -------->ATHB1                   <--------HAHB4                   -------->HAHB4                   <---------AHL20(2)                   --------->YAB1                  <---------ATHB51                  <---------YAB1                  --------->ICU4   --------->ANAC55(2)                                       --------                --------->YAB1-------->ATHB1                                           --------->At5g28300                <---------ICU4<---------ICU4 --------->YAB1                         <-------TEIL    < --------YAB1  <---------AHL20(2)  <---------ANAC55(2)                 --------->YAB1 ----------->GT1 -------DOF2   --------->AHL20(2)<-----------GT1             <-----------GT1   ----------->RAV1(1)  -   tttgattccatgggatattaattattaaaaaattattacctattgaatcagagttattgtatattaccttctctcataaaacaacatacagtaaatggtt  6357500                                            --------->TGA1a                                            <---------TGA1a                                            <---------O2                                            --------->O2                                           --------->ATERF1(1)                                           <------NtERF2                                          <---------ATERF1(1)                                          ------>NtERF2                                         ----------->HVH21                --------->DAG2           <---------DEAR3(1)               ---------->DOF2           --------->DEAR3(1)               =======================================bZIP_DOF      <---------AHL20(2)                --------->ATERF1(1)                          ------>MYB83      --------->AHL20(2)               --------->LBD16                      --------->YAB1     --------->AHL20(2)                <---------ATERF1(1)            <-----------GT1------>MYB46(1) <------ZmHOX2a(2)                   <---------LBD16                --------->AHL20(2)     ---------- --->GT1  <-----------GT1           <---------ATERF1(1)          ------>MYB46(1)   --------->TOE1(2) ---------ARR11(3)   --------->GLK1(1) ------>NtERF2             ------>MYB83     ----------->RAV1(2) -------->ARR11(3)   <---------GLK1(1)<---------DEAR3(1)       <---------MYB59   ------->TEIL   aagatcatttatttacaaaaaggaaatcggaatgtggtctccggcgacgggacaaaccaggctgaccaaatttaacaagaatgaacctgccatcaaagaa  6357600  Previous    Next  AGI:  At5g19020.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71087.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABN09753.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6352773    to: 6357085    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g19030.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G20030.1); similar to cold inducible RNA-binding protein beta [Hyla japonica] (GB:BAB92956.1); similar to cold inducible RNA-binding protein alpha [Hyla japonica] (GB:BAB92955.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 6357385    to: 6359126    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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