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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
xxxx
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
--------->
YAB1
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
MYB52(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
WOX13(1)
xxxxxxxxxxxxxxxxxxxxxxx
--------->
DAG2
<-----------
HVH21
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxx
---------->
DOF2
--------->
ANAC58
--------->
ATHB12
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
CCA1(2)
--------->
ANAC46
<---------
AHL20(2)
<-----------
HVH21
<------
-------->
ARR11(3)
--------->
ANAC58
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
---------
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
aagatataaagttgctatgtagcgatgagagttatacgcagacagtcagttctaatttgattgataaatctatgaagtgtcacatttgccaagaccgcta
6341900
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<------
MYB83
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<------
MYB46(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<------
ZmHOX2a(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ZAT18
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ZAT14
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
---
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
MYB59
<------
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
----------->
GT1
--------
------->
GAMYB
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
DAG2
--------->
AHL20(2)
xxxxxxxxxxxx>
smallRNA(s)
<------
ZmHOX2a(1)
----------->
GT1
----------->
GT1
xxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
---------->
DOF2
--------->
DAG2
>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
GT1
--------->
DAG2
<-------
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
---------->
DOF2
<-------
---
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ALFIN1
----------->
GT1
---------->
DOF2
gttctaactgtctgcatagtagactcaggacaggaatgtaggttctaactaatgtggagaaataaaaagtagaaaaaaaagcgttgaaaagttaataaaa
6342000
--------->
ATHB12
<---------
YAB1
--------->
ICU4
--------->
CCA1(2)
---------->
DOF2
--------->
AHL20(2)
--------->
ANAC58
<---------
AHL20(2)
--------->
ANAC58
<---------
AHL20(2)
---------->
DOF2
--------->
YAB1
--------->
AHL20(2)
--------->
AHL20(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AHL20(2)
<---------
AHL20(2)
-------->
GT1
--------->
AHL20(2)
--------->
AHL20(2)
---
AHL20(2)
--------->
AHL20(2)
--------->
ARR11(1)
<---------
ATHB51
---
->
AHL20(2)
<---------
AHL20(2)
--------->
ARR11(3)
--------->
AHL20(2)
<--
--
AHL20(1)
----------->
GT1
<---------
AHL20(2)
<---------
ATHB12
---
--
AHL20(2)
<---------
TOE2(3)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
----
ttgaaataatagatttaagaaatgtctgtaaaaaaaaaaaattttaatttaaaaagatatgattagaaaaacaaataatttgtgaaagcacttaaaaaaa
6342100
<---
<------
-------
--------->
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<----
<---------
AHL20(2)
<---------
AHL20(2)
---------
<---------
AHL20(2)
<-----------
GT1
<---------
AHL20(1)
--------->
AHL20(1)
--------->
YAB1
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(2)
------>
AHL20(1)
--------->
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
------
-------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
------>
AHL20(2)
---------->
DOF2
----------->
GT1
--------->
AHL20(2)
<---------
AHL20(2)
----->
AHL20(2)
<---------
TOE2(3)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
aaaattgagagaatgtagaaattttgagataaaaagaataaataaaatttgtaaataaataaataatattaacaattttttaatttataaaatattatga
6342200
<---------
GLK1(2)
--------->
REM1(1)
------>
ZmHOX2a(2)
------
WOX13(1)
------>
NtERF2
*
TSS
---
YAB1
--------->
ZAT2
<---------
ICU4
-->
ICU4
<---------
ZAT2
--------->
WOX13(1)
<------
--------
CBF
--------->
At4g35610
<---------
YAB1
<----------
DOF2
=======
>
YAB1
<---------
At4g35610
<-----------
GT1
------>
MYB83
--------->
YAB1
<---------
MYB52(1)
--->
ATHB12
<---------
At4g35610
------>
MYB46(1)
<---------
YAB1
<-------
TEIL
<--
ttggctacagcttctctagctgcccaaactctgttttacaaaatcccaaaccaaacaagttatcattc
atgatcgctttcgttatattcattctctcttt
6342300
<-----------
TGA1
--------->
ANAC58
--------->
TGA1a
--------->
ANAC46
--------->
bZIP60(2)
<---------
O2
--------->
ANAC58
<---------
TGA2(1)
--------->
O2
<---------
TGA1a
--------->
TGA2(1)
<---------
bZIP60(1)
--------->
bZIP60(1)
<-----------
STF1
=============
MYC_MYB
--------->
DEAR3(1)
------->
GAMYB
--------->
At1g77200
----------->
HVH21
---------
--------->
DREB2C(2)
--------->
ARR14(2)
<--------
--------->
DEAR4(1)
<---------
ARR14(2)
--------->
LBD16
--------->
MYB46(3)
--------->
DEAR3(1)
<---------
ANAC55(2)
--------->
DEAR3(2)
--------->
LBD16
--------->
ANAC55(2)
<---------
ALFIN1
--------->
LBD16
<---------
ANAC46
<-----------------
AGL1
--------->
TGA2(2)
------>
NtERF2
<---------
LBD16
================================
bZIP_DOF
--------->
HSFC1(2)
<---------
ARR14(2)
<----------
DOF2
--------->
MYB46(3)
<---------
LBD16
<---------
GLK1(2)
<-----------------
AGL1
----
DOF2
<---------
MYB55(2)
--------->
MYB52(1)
<---------
ALFIN1
------>
ZmHOX2a(1)
================================
bZIP_DOF
<---------
HSFC1(2)
<---------
MYB52(1)
--------->
ARR14(2)
---------
GT1
--------->
PCF2
--------->
WOX13(1)
<---------
At4g35610
<<<<<<<<<
TBF1
--------->
GLK1(2)
tctctttccattttggctcccaccgacgtcatcaatctctaccggagacttccgccgattctcacaccgttcttcttctctccttccgattccggattcc
6342400
<----------
DOF2
<---------
ANAC58
------>
ZmHOX2a(2)
<---------
ANAC58
--------->
ARR14(2)
--------------->
AtSPL8
<---------
AGP1
<<<<<<<<<
CBP60g
>
ARR14(2)
<----------
DOF2
<<<<<<<<<
SARD1
------>
ZmHOX2a(2)
-
ARR14(2)
<-----------
GT1
<---------
ARR14(2)
--------->
LBD16
<--------
aatttcgttccttttttgttttctctcaaaacccctaaattttcttcctttcttcgatctggattttttgtgttccccaaatttcaagactttgatctga
6342500
<------------------------
ANAC81
--------->
ARR11(3)
--------->
ARR14(3)
--------->
ARR14(2)
<---------
ARR14(2)
<
<---------
ARR11(3)
<-
<---------
ARR14(3)
<-
---------->
DOF2
--
--------->
ANAC58
<---------
TOE1(2)
--------->
ANAC58
--------->
ATHB12
<---------
TOE2(2)
<---------
GLK1(1)
<----------
DOF2
------>
ZmHOX2a(2)
--------->
ZAT2
<--
--------->
GLK1(1)
------>
ZmHOX2a(2)
<---------
GLK1(1)
--------->
At4g35610
<-
--------->
ARR11(3)
<---------
RVE1(1)
<------
ZmHOX2a(2)
<---------
ZAT2
-----
<---------
ARR11(3)
<------
ZmHOX2a(2)
--------->
GLK1(1)
<---------
ARR14(2)
<----
<---------
TOE2(3)
----------->
ARR10
<---------
ARR11(3)
--------->
ARR14(2)
<-----
-
At4g35610
---------->
DOF2
--------->
ARR11(3)
--------->
ZAT18
<---------
At4g35610
--
ttccttctaagatttctccaaagcaaagatcttttttttgttttttgggatctctgtattgttg
atgggcacaactagggtctgctcggaggtttcttct
6342600
<---------
MYB46(3)
<-----------
RAV1(1)
------>
ZmHOX2a(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
---------
GLK1(1)
--------->
CCA1(2)
--------
AGP1
--------->
AGP1
--------
ARR14(2)
--------->
ARR14(3)
------->
ARR14(2)
<---------
ARR11(3)
-------
CCA1(2)
<---------
AGP1
--------
ARR11(3)
--------->
AtMYB61
<---------
ARR14(3)
---->
HSFB2a(2)
--------->
ANAC58
<---------
WRKY38(1)
--------->
ARR14(2)
-----
HSFB2a(2)
--------->
ANAC46
<---------
WRKY12
<---------
ARR14(2)
----
LBD16
--------->
ANAC58
--------->
WRKY18(1)
--------->
ARR11(3)
--
------->
ARR11(3)
----------->
HVH21
----------->
RAV1(1)
<---------
AtLEC2
--------------->
AtSPL8
ggatcttcgaaatcgcttagccaatctctcacggtatcgacctctaccacagaaacagtcaatggtttccatgaattcaagatctgtgggtactctctcg
6342700
<---------
MYB46(3)
----------->
GT1
--------->
MYB55(2)
<-------
GAMYB
<---------
ANAC55(2)
<---------
MYB52(1)
--------->
ARR14(2)
<------
MYB83
<---------
ANAC46
<------
MYB46(1)
--------->
ETT(1)
<---------
DEAR4(1)
--------->
ATERF1(2)
<---------
DEAR3(1)
<---------
At1g77200
<---------
DREB2C(2)
<------
NtERF2
--------->
MYB111(2)
--------->
ATERF1(1)
--------->
MYB46(2)
--------->
RAP2.6(3)
<-------
TEIL
<---------
DEAR3(2)
<------
MYB83
--------->
ANAC46
--------->
MYB111(1)
<--
<------
MYB46(1)
--------->
ARR14(2)
--------->
ARR14(2)
-------
<---------
AtMYB61
<---------
DEAR3(2)
<---------
MYB46(3)
--------->
HSFC1(2)
<--------
P
<---------
ARR14(2)
--------->
MYB55(2)
--------->
HSFB2a(1)
<-----------
RAV1(1)
<-----------
HVH21
<---------
ORA47(1)
<-----------
GT1
<--------
--------->
ALFIN1
<-------
TEIL
<---------
ARR14(2)
<---------
ARR14(2)
<----------
DOF2
<---------
HSFB2a(1)
-------->
DOF2
<------
NtERF2
<---------
MYB52(1)
<-------
GAMYB
--------->
WOX13(1)
<---------
HSFC1(2)
ctaaaggtgttggtgtcggcaaatacgtcgcttccgatacgtttatggtcggtggttactcgtgggcaatctacttttatccagatgggaagagtccgga
6342800
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AGI:
At5g19000.1
Description:
ATBPM1 (BTB-POZ AND MATH DOMAIN 1); protein binding. similar to ATBPM2, protein binding [Arabidopsis thaliana] (TAIR:AT3G06190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71081.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain TRAF-type (InterPro:IPR013322); contains InterPro domain BTB/POZ; (InterPro:IPR013069)
Range:
from: 6342269
to: 6344796
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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