Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->YAB1                                         --------->ICU4 --------ATHB1                                                --------->ATHB12 -------->YAB1                                           <---------ZAT14 -------->ATHB12                                         --------->ZAT14                   ------>MYB83 ---------ICU4             --------->GLK1(2)         --------->LBD16                       ------>MYB46(1) ------->HAHB4--------------->AGL15                 --------->LBD16                        --------->ANAC58 ------->ICU4--------->ANAC55(2)                   --------->LBD16                         --------->ANAC58 --------ATHB12    <---------AHL20(2)          --------->ARR14(2)               --------->YAB1 --------YAB1<---------ANAC55(2)  <---------YAB1  <---------LBD16              <-------TEIL--------->ANAC46 -------TOE2(3)    --------->AHL20(2)          <---------ARR14(2) ----------->GT1  <---------ICU4   aatgattgtaatcttacttaataaatgaaattcttgattatacagccaaaatccccgagtttagtgattagtataaacacattcataagtaccaagccat  6037700                   --------->TOE1(2)                  ===============================RAV                   --------->ANAC46                  --------->TGA1a                                      --------->ANAC58              <---------ALFIN1                                 <---------AHL20(2)           <------ZmHOX2a(1)                                   --------->AHL20(2)     ----------->HVH21         ----------->GT1             --------->AHL20(2)  <---------AtLEC2----------->RAV1(2)                <-------TEIL      --------->ANAC58 --------->ZAT2   <---------TGA1a                 <------ZmHOX2a(1)  --------->MYB52(1) <---------ZAT14  --------->ZAT2                <---------TOE2(3)  <---------MYB52(2) <---------ZAT2   <---------ZAT2     --------->MYB52(1)   --------->AHL20(2)      <----------ID1  <-- --------->ZAT14<---------ALFIN1     ----------->RAV1(1)  <---------AHL20(2)--------->ICU4--------->ZAT6   ctctgcagggacaggaacacacctgagacaaaatggaaacaacagtatttgaggatgcatataaattaaactaacgcaatatttaagacaaaacactaga  6037800            --------->At4g35610            <---------At4g35610     <---------ANAC55(2)                                                                       <-----     --------->ANAC58         --------->YAB1                    <---------WOX13(1)           --------     --------->ANAC55(1)      <---------ICU4                  --------->ATHB12              <--------     --------->ANAC58 <---------At4g35610                    <-------TEIL                   <--------     --------->ANAC55(2)   --------->YAB1              ---------->DOF2                     --------->TOE1(2) -----TEIL--------->MYB46(3) <---------YAB1         --------->At4g35610           --------->AHL20(2)   ttcagactcgtaacagctgttttgagctcttataatcacagaagaaatttagacagcaaaagattcattgatggagaaaccaaaataaacaaacccagga  6037900                            ---------->DOF2                       <---------DEAR3(1)                       --------->ETT(1)                       <---------DREB2C(2)                       <---------At1g77200                     <-----------HVH21    <---------HSFB2a(2)<---------DEAR4(1)                                            --------->TOE1(3)    <---------LBD16 <-----------RAV1(1)                                              --------->TOE2(3)    --------->HSFB2a(2)<---------ANAC46                                          ------->GAMYB -ZmHOX2a(1)        --------->ALFIN1  <---------ZAT14       <---------ARR11(3)  --------->MYB46(3) ->LBD16   --------->ARR11(3)  --------->At4g35610        ----------->ARR10  <----------ID1 -LBD16<------ZmHOX2a(1)<---------DEAR3(2)<---------GLK1(2) --------->ARR11(3)  <---------MYB52(2) ---RAV1(2)<---------ARR11(3)  <---------At4g35610  ---------->DOF2     ---------->DOF2   agaattcgaggaagataaccaagtgtcggtgaaagcagactacagattatacagaaaaggaagattttaaaaatcaaagacaacaaaccttcaaactttg  6038000                                                                                                <----                                                                                             <-------                                                                                           <---------                                                                                  --------->ZAT14                         <---------GLK1(1)                                        <---------ZAT18         <---------LBD16<---------ARR11(3)                                        <---------ZAT14         --------->TOE1(2)                                                        --------->ZAT18         --------->TOE2(2)                                                      <---------At4g35610        ----------->RAV1(2)                           ----------->GT1           --------->ZAT18 <----   --------->YAB1       --------->ARR11(3)       <---------RVE1(1)              --------->At4g35610  <---------YAB1    ---------->DOF2          <---------ANAC46                   <---------ZAT18<-----   gaaaatgataacctgggtttgagaaagaactctgtaatttggagatggctgatattttgtaaaatcgatgagagtaagagagagcgcacttctctttact  6038100                                                                                               <-----                                                                                               ------                                                                                               ------                                                           ------>NtERF2                       ------                                                          <---------DEAR3(1)                   ------                                                         --------->RAP2.6(3)                   <-----  <----------DOF2                                      --------->DEAR3(1)                     <------ -----DAG2<----------DOF2                            ------>NtERF2                            ------- ----GT1*TSS                             ----------->RAV1(1)                                  <------ -DOF2---------->ID1                    --------->ANAC58<---------ATERF1(1)               ----------- ------DOF2                             --------->ANAC58------>NtERF2                   --------->ZAT18 -------------------ANAC81         --------->YAB1   --------->DEAR3(1)            --------->YAB1   <-   ttttctttgtctcttttttttttttttttttttgaaataagaacgacagagacgacgacgacggctatgagttctgttctgtaatgagagtggccaatta  6038200      <--------HAHB4      <---------ICU4     --------->ICU4     <---------YAB1 ----ICU4 --->AHL20(2) --->ATHB51 -->ATHB1                                                                                    <------- --->YAB1                                                                                    -------- ---HAHB4<-----------GT1                                                              --------->YAB1 ---ATHB51                                                                            <---------ICU4 -->ICU4<---------YAB1                                                               --------->KAN4(1) ---ATHB12                                                                 <<<<<<<<<<<<<<<<<LFY ->CBF--------->ATHB51<---------ICU4                                <---------YAB1   --------->ICU4 ----------GT1 <----------DOF2     ----------->GT1       <-----------RAV1(1)        <---------KAN4(2)   ttaacccattattactccttttaaaaattagtatttctggttaatcccctcactgatttttgttgttgtttttattctaacattggaataatcactaatg  6038300                  <--------HAHB4                  --------->YAB1                 --------->ICU4                                                   <----------DOF2         <---------bZIP60(2)                                                   --------->GLK1(2)      ----------->HVH21                                                        ------->TEIL    ----------->GT1 <---------YAB1                                      <---------YAB1    <---------bZIP60(1)                                              --------->AHL20(1)    --------->bZIP60(1) <---------ZAT6            <------ZmHOX2a(1)  <---------AHL20(1) --ICU4  --------->CCA1(2)                 <---------YAB1         <---------AHL20(2)            ----- ->MYB52(1)      <---------YAB1    <---------ARR11(3)             --------->AHL20(2)       ----------   gctatgatgtgatatggctattattagagttacacattatctattttcattaggatatataaaactaaaaaaatattagtgaatctttaacaaaaaagaa  6038400                                                                                       --------->ATHB51                                                                                       --------->ATHB12                                                                                       <---------ICU4                                                                                       <--------ATHB1                                                                                       -------->ATHB1           --------------->AGL15                                                      <<<<<<<<<<AGL24          <-----------------AGL2                                                      <---------YAB1          <-----------------AGL3                        --------->YAB1                <<<<<<<<<<AGL22          ----------------->AGL3                       <---------YAB1                 <---------ATHB12          ----------------->AGL2                      --------->AHL20(2)              <---------ATHB51   <---------ARR11(3)                                 <---------AHL20(2)              <<<<<<<<<<AGL20   --------->ARR11(3)                                 --------->AHL20(1)              --------->ICU4  ----------->GT1   ---------->DOF2                  --------->YAB1       --------->YAB1 ----->DOF2<---------------AGL15              --------->GLK1(1)           --------->TOE2(3) >DOF2  <-----------GT1                  <---------ANAC46                 --------->TOE1(3)    <-----   aagaaggtatttactatttagagaaagaaatgtgttttcatttgagtgaaatccattataatatcaactattgttatcttaaaacccaattattggtatc  6038500                                                                                           <---------ZAT14                                                     --------->MYB52(1)                    --------->ZAT14                                                    ------->GAMYB                        <-----------                                                   <---------MYB55(2)                    --------->ZAT6                                                   <---------MYB52(2)              <---------MYB46(3)                            --------->YAB1         --------->MYB46(3)        <---------ARR11(3)                          ------>MYB46(1)          <---------MYB46(2)        --------->ARR11(3)                          ------>MYB83         ------>ZmHOX2a(1)           <---------AHL20(2)    ---------->DOF2     <---------MYB59       --------->TOE2(3)           --------->AHL20(2) ----YAB1      --------->ZAT6          <----------DOF2<---------TOE2(3) --------->YAB1   <-----------   atcgaataaaggtgttttcactagtacctatcaaaattcaactttcatcctcaactaacgaatagattactcaatattaaatctttggttaagagtactg  6038600  Previous    Next  AGI:  At5g18255.1    Description:  other RNA Range:  from: 6035626    to: 6037605    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g18260.1    Description:  protein binding / zinc ion binding. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G39140.5); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G39140.3); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G39140.4); similar to unnamed protein product [Vitis vinifera] (GB:CAO23503.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6036204    to: 6038108    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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