Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------DEAR3(2)         <------MYB46(1)                                 ------>ZmHOX2a(2)         <------MYB83   <---------ANAC58                 =====================HOX2a_HOX2a     -------         ----------->GT1<---------ANAC58               <---------ARR11(3)                  <--------- >ZmHOX2a(1)            <---------ANAC46               <-----------ARR10         --------->TOE2(3) ----LBD16         <---------ZAT6            --------->LBD16                  --------->ARR14(2) --->LBD16--------->At5g28300               --------->HSFB2a(2)        ------>ZmHOX2a(1)<---------AHL20(2)   ggaaacagagtcggtaacatagtgtgacttgatgctgtccatgtttcccgagtccctgatctcatcgtctctcctatccaaaacctccatttttttctcg  5990600                    <----------DOF2               <---------ANAC58                        ------------------------>ANAC81               <---------ANAC58                       ---------->DOF2                               <           <<<<<<<<CAMTA3                          >>>>>>>>>TBF1                                  <--         --------->ANAC55(2)                   <------ZmHOX2a(1)                                  <--     <-----------HVH21                      --------->YAB1              ---------->DOF2<----------DOF2 -->HSFB2a(2) <-------TEIL                 <---------ATHB12    <------ZmHOX2a(1)    <-----------GT1-- --GT1   --------->ANAC46---------->DOF2 --------->WOX13(1) <------ZmHOX2a(1)      *TSS<---------DAG2   attagagcttcacgcgttcgtgctttcaaaagccctaaaattccaatcaggaagaagaaagaggaggagagaagaaaagaactgtattacttttccactc  5990700                       --------->LBD16          --------->DAG2                                                                            -         ---------->DOF2                                                                       ------      <---------ANAC55(2)      --------->AHL20(2) <------------CBF                           --------     <-------TEIL     --------->HSFB2a(2)        --------->ATHB12                            <------- ---------WRKY12      <---------HSFB2a(2)      <----------DOF2                      --------->MYB52(2) ---------HVH21      <---------LBD16          ----------------->AGL1              <---------MYB52(1)< ------ZAP1        --------->GLK1(2)     ------->MYC3                       --------->ATHB12--------- ------->WRKY18(1)<---------GLK1(2)      <-------MYC3 <---------ANAC46<----------DOF2   --------->AHL20(2)   ggtcaaatacataaaggtcaaattctggagaaaaaaaatagcatatgggccttattgggtctactaaatgggccttagtgattagttagttttaatatct  5990800      <---------YAB1     <-----------GT1 <--------ATHB1 --------->YAB1                                                                   <-------GAMYB -------->ICU4                                                                   <------MYB83 --->TOE2(3)           --------->ZAT14                <----------ID1             <------MYB46(1) ->ARR11(3)        --------->ZAT6                     <---------ZAT18            <---------MYB46(3) --ARR11(3)       <---------At5g28300             --------->DAG2             <---------MYB46(3) ---------ATHB12 <-----------GT1                 ---------->DOF2     <---------ANAC55(2) >RVE1(1)   <----------DOF2            ----------->GT1--------->ZAT18<---------TOE2(3)   <---------ANAC55(2)   caatgattttcattcttttttacagtaaacaaaataagaaacagaaaattcaaaagtggacaaaatgtattaagtatagttgttggttattacataaact  5990900                                                  <---------LBD16                                               <-----------HVH21                                               ------>MYB46(1)            ---------->DOF2                ------->TEIL                          <---------AHL20(2)      --------->LBD16                   --------->ANAC58                         --------->AHL20(2)     ------->GAMYB                      --------->ANAC58  *TSS    <---------REM1(1)     --------->ANAC46                  <-------MYC2     --------->ICU4    ----------->GT1   ------>MYB46(1) --------->CCA1(2)   ------->MYC2--------->ANAC46  <---------ANAC46   -------->P     <---------ARR11(3)   ------->MYC3--------->ANAC58--------->ZAT14                  -   ------>MYB83   --------->ARR11(3)   <-------MYC3--------->ANAC58<---------ZAT14                ---   --------->MYB52(1)              <-------TEIL------>MYB83       <---------ANAC46       ---------->DOF2   aatccaaccggaacaaaagagatatgtcttaaacacatacacatgcacctatcacggcaagattagtggtgtagtggagaaaattaaaaaaaaaaggaat  5991000                                                     <---------ANAC58                                              <----------DOF2                                      --                              <---------AHL20(2)     <---------ANAC58                              --                              --------->AHL20(2)     <---------ANAC46                       --------- ---------->HVH21      ----------->GT1   --------->GLK1(2)                                --------->ANAC55(2) ------>ALFIN1       ---------->DOF2---------->DOF2 ---------->ID1        --------->ICU4  <---------ANAC55(2)   gtgtgacgaatgcgatttgtcaaaaaagaaaattaaaaaaaagaatcgatttttggcgttctccatctgtaatgtaatgtttctgcaaaaacaagtgaca  5991100                      <---------GLK1(2)                <---------At4g35610               --------->ARR14(2)               ------->TEIL               <---------AGP1                        <---------ANAC58     <---------DAG2   --------->ARR11(3)             <---------ANAC58     <----------DOF2  <---------ARR11(3)             <---------ANAC55(1)                      <------ ------->AHL20(2)------>ZmHOX2a(2)             <---------WOX13(1)                             <------ ------->YAB1  <---------ARR14(2)           <---------YAB1                        <----------DOF2 -->HVH21 <---------AtLEC2       <---------ARR11(1)  <---------ANAC46 ---------->DOF2  <---------At4g35610   ataaaaactttttcatggatctgagattttctccaaatctatatttgtgattgtttcgtgtagtttttctcttaaagttgtgttctttaagctctctcgt  5991200                    <<<<<<<<<<MYB80        --------->ANAC55(2)        <---------ANAC55(2)        <---------ANAC58        <---------ANAC58     <---------ANAC58       <---------TOE2(2)     <---------ANAC55(1)       <---------TOE1(2)     <---------ANAC46                   <-----------GT1      <-----------GT1        <---------ANAC58               <----------DOF2 ---ANAC58      <---------MYB52(1)                    <----------DOF2                         ------- ---ANAC58      <----------DOF2                   <-----------GT1                      ----------->GT1   gctcaatcttacgtttccctttggtttgatttcgtgtttttgttattcgatttcacctttaacttttatctaatctcttgtttttgattttgtaaattgt  5991300                                                                                   <---------TOE2(3)                                                                           --------->TOE2(3)                                                                           --------->TOE1(3)                                                                          ------>ZmHOX2a(2)                                                                         <------ZmHOX2a(2)                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                        --------->ARR14(2)                                    <----------DOF2                     <---------ARR14(2)                                    <---------DAG2                     <------ZmHOX2a(1)                         --------->GLK1(2)                   --------->LBD16     --------->AHL20(2)      <---------ANAC46   --------->ARR14(2)                 --------->DEAR3(1)   <---------AHL20(2)    --------->GLK1(2)    <---------ARR14(2)                 <---------ANAC46------>ZmHOX2a(1) ---->GT1             ----------------->AGL1     <-----------GT1     <---------TOE2(3) ------->TEIL   aaaaagtttctggtgattctcttagcgaatttgggaaactttatctgtatttttctgtttcgccgtagatttaggatccttaattaatgaatttgtgggt  5991400                                                                                                   --                                                                                               ------                                                                                              -------                                                                        --------->ANAC58     <-------                                                                        --------->ANAC58     <-------                                                            <---------ANAC58                 <-------                                                            <---------ANAC46                 <-------                                                            <---------ANAC58                ------>ZmHOX2a(2)                                                           <---------TOE1(3)                =========                                 <---------ANAC58          <---------TOE2(3)               <------ZmHOX2a(2)                                 <---------ANAC58         <---------DOF5.7(2)      --------->ALFIN1==                                <---------ICU4           --------->WRKY12  --------->ARR14(2)--------                      --------->At4g35610               --------->DOF5.7(2)<---------ARR14(2)<-------           <---------CCA1(2)   <---------YAB1         <---------ANAC46--------->YAB1       ==========        ------>ZmHOX2a(1)   <------ZmHOX2a(2)     <---------ANAC58   <---------ATHB12     <---------ARR14(2)        ===========================HOX2a_HOX2a    <---------ANAC58 --------->WOX13(1)     --------->ARR14(2)   ttcaatattcctcgtctctgcaatagctggatcatgcttaccttctgggtttgcttacgttgacgtttgcaatcacgaattcgaggtgttccgatccgtg  5991500  Previous    Next  AGI:  At5g18110.1    Description:  NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding / translation initiation factor. Identical to Eukaryotic translation initiation factor 4E type 3 [Arabidopsis Thaliana] (GB:Q9FK59;GB:O64928); similar to EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E, LOSS-OF-SUSCEPTIBILITY TO POTYVIRUSES), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT4G18040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23473.1); contains InterPro domain Eukaryotic translation initiation factor 4E (eIF-4E); (InterPro:IPR001040) Range:  from: 5988746    to: 5990683    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18120.1    Description:  ATAPRL7 (APR-LIKE 7). similar to ATAPRL5 (APR-LIKE 5) [Arabidopsis thaliana] (TAIR:AT3G03860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23474.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335) Range:  from: 5990958    to: 5993938    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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