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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                               ------>ZmHOX2a(2)
                                                            -------->HAHB4
     <---------At4g35610                                 --------->YAB1                --------->AtMYB61
     --------->At4g35610                  ------>ZmHOX2a(2) --------->ATHB12          --------->MYB46(3)
 --------->ANAC46                        <------ZmHOX2a(2) <---------YAB1           --------->AtMYB61
 --------->ANAC58       ----------->GT1 --------->ARR11(3) --------->ICU4          --------->MYB46(3)
 --------->ANAC58       <---------YAB1  <---------AGP1 --------->AHL20(2)      --------->SPL7
------>YAB1      --------->ARR11(3)     <---------ARR11(3)<---------TOE2(3)<---------------AtSPL3
--->AtSPL8       <---------ARR11(3)     --------->AGP1 <---------AHL20(2)  <---------------AtSPL8
----AtSPL8     <---------YAB1     <---------YAB1      --------->YAB1       --------------->AtSPL8<--
 
taacaagcagctcttatgaagatagtgatgaaaaattgttatagatctatcttggaattttaatgatcgaatttcgattttgtacgaccaccatcgaggc  5876800
                                                                   --------->ANAC46
                                                     --------->AHL20(2)
                           <---------ANAC46          <---------AHL20(2)
                          --------->At4g35610        --------->AHL20(1)
                         <---------MYB46(3)     <---------YAB1     --------->ANAC58
                        <--------P            --------->YAB1       --------->ANAC55(2)
                       <-------GAMYB          ----------->GT1      <---------ANAC55(2)
                      <---------MYB46(3)     ----------->GT1       --------->ANAC55(1)           ---
                     --------->ALFIN1    --------->AHL20(2)        --------->ANAC58             <---
----NtERF2 ----------->GT1<---------At4g35610<---------YAB1 <-----------GT1                     ----
 
atcgactataaatatagttaaaatgtggttgctgaaaaaaaaaaaaaaatgataaataaaatgaaaccgcacgtaattgtataaaaccattagcatggga  5876900
                      --------->ZAT6                                            ----------->GT1
             ----------->GT1                                                    <---------ANAC46
     --------->RAP2.6(2)                                                        --------->ALFIN1
     <-----------------AGL1                                                   <---------ANAC58
     ----------->RAV1(1)                                                      <---------ANAC58
 --------->MYB59    <-----------GT1                                           <---------ANAC46
------>ATHB12<------MYB46(1)                  <----------DOF2              <---------AtMYB61
------YAB1   <------MYB83        --------->ATHB12                    <---------ARR11(3)
----->ICU4  --------->MYB59     <---------AHL20(2)       <----------DOF2<----------DOF2     --------
 
ttattaggccacaatttggtaattaacacttgtaattcatttgaatatgcttttacaaaactttcccttcaatttcttttggtgtgtgaataaacagcta  5877000
                                                                                <---------ANAC58
                                           <---------YAB1                       <---------ANAC58
                          --------->MYB46(3)<---------ICU4           <---------AHL20(1)
                        <-----------GT1  <---------ICU4              --------->AHL20(1)
                    <---------AHL20(2)   --------->YAB1             <---------AHL20(2)
                   --------->AHL20(2) --------->YAB1            --------------->AGL15   --------->AHL20(2)
                 --------->TOE2(3)  --------->ANAC58            <---------------AGL15   <---------AHL20(2)
               <-------TEIL         --------->ANAC58   <---------ARR11(3)      <---------STY1(2)   -
               ------->TEIL      --------->ZAT14       --------->ARR11(3)      --------->STY1(2)  --
           <---------------AtSPL8<---------ZAT18       --------->AHL20(1)      --------->ZAT2 ------
->At4g35610--------------->AtSPL8<---------ZAT14       <---------AHL20(1) <-----------GT1   --------
 
tcaattttgtttttcatgtacattaaataaccactctgcactcatcatcattttctaaaatattcttctatatatattaactagcttgcaaataaatgta  5877100
                     <---------AHL20(2)
                    <---------AHL20(1)
                 <---------ICU4
                 --------->ATHB51
                 --------->YAB1
                 <--------ATHB1
                 <---------AHL20(1)
      <---------AHL20(2)                                                        --------->ZAT18
      --------->AHL20(2)        <---------ARR14(2)                              <---------ZAT14
  --------->AHL20(2)--------->AHL20(2)                                          <---------ZAT18
--------->AHL20(2)  <---------AHL20(2)      ------>ZmHOX2a(1)            --------->AtLEC2
-------->YAB1    --------->AHL20(2)    <----------DOF2              --------->ANAC58
------->AHL20(2)<---------ATHB12--------->GLK1(2)                   --------->ANAC58        <-------
--->AHL20(2)    <---------ATHB51<-----------ARR10                 ---------->DOF2         *TSS
--->GT1     ------------>CBF   <---------GLK1(2)             ----------->GT1    --------->ZAT14
 
aataaaaatataaatttcaataattttttttagagaatctctctttcctcttccaccatataaacagtgaaaagccattcaagtgctctctccctctatc  5877200
                                                                       ===================HOX2a_HOX2a
                                                                      ====================HOX2a_HOX2a
                                                                      --------->CCA1(2)
                                                                     <---------ARR11(3)
                                                                     --------->ARR11(3)
                                                                     --------->AGP1
                                                                     <---------AGP1<------ZmHOX2a(1)
                       <---------MYB52(1)             --------->ARR14(2)          ----------->GT1
   <---------------AGL15                              <-----------ARR10------>ZmHOX2a(2)        ----
   --------------->AGL15                              <---------ARR14(2)         --------->ANAC58
  ==================================================================================================
  <-----------------AGL3              --------->LBD16<---------CCA1(2)<------ZmHOX2a(2)<------------
--CCA1(2)             --------->TOE2(3)         ------->TEIL     ---------->DOF2 --------->ANAC58
 
tctcttctatttttagtttctcttcccttaatccctaaacccagaaacatgaatccaaatctccttgagaaagatctaagaggtaaggaaactacaaatg  5877300
                                        ------>MYB46(1)
                                        ------>MYB83
                                      <---------MYB111(2)
                                      <---------MYB46(2)
                                      <---------MYB59
                                ------>ZmHOX2a(2)
                              --------->ARR11(3)
                              <---------ARR14(2)        <---------ANAC58
                              --------->AGP1            <---------ANAC58                           -
                              <---------ARR11(3)    <---------At4g35610      -------->P   <---------HSFB2a(2)
                   --------->ANAC58   <---------MYB111(1) ----------->GT1   ------->GAMYB --------->HSFB2a(2)
                   --------->ANAC58  --------->ANAC46   <---------ANAC46   <---------MYB55(2)      -
        <-------TEIL          --------->ARR14(2)    --------->At4g35610    --------->MYB46(3)   ----
       --------->CCA1(2)      <---------AGP1        <---------ZAT2         <---------MYB111(2)<-----
    <---------------AtSPL8   <---------At4g35610   <-----------RAV1(1)--------->ANAC58    <---------HSFC1(1)
------->GT1    --------->ANAC58<------ZmHOX2a(2)--------->ANAC46      --------->ANAC46    --------->HSFC1(1)
=====MADS_MADS --------->ANAC58--------->GLK1(1)<---------ALFIN1      --------->ANAC58 --------->ZAT6
-----AGL3 ---------->DOF2    <---------CCA1(2)<---------ALFIN1     --------->ZAT14  <---------CCA1(2)
 
ggtcaataagatacaaagaagcaaacaacttcagatctctaccaaactcacacactgctgcttgtaaaacttcactcaacaacccctctatctctagaaa  5877400
   --------->ANAC46
  ------>ZmHOX2a(1)
----->MYB46(1)                                                                              --------
----->MYB83                                --------->TOE1(2)        ---------->DOF2        ---------
----->MYB46(3)                           ------->TEIL            <----------ID1     --------->ALFIN1
------GT1        --------->TOE2(3)  --------->At4g35610  ----------->GT1      <---------TOE2(3)
 
ccatcctcacaacaaatcagcctcagtcttggagtcggaagatgaacatgggaacgagagaggtgaaaacgaaaagagtttaagaatgaggggcaaaagt  5877500
                                                                                   <---------------AGL15
                                                                                   --------->ANAC46
                                                                                  ----------------->AGL1
                                                                                  ----------------->AGL2
                                                                                  <-----------------AGL1
                                      ------>MYB46(1)                             <-----------------AGL3
                                      ------>MYB83                           <------MYB46(1)
                              --------->ZAT14                                <------MYB83
                         <---------ZAT14                                    --------->MYB59
                         --------->ZAT18------->GAMYB                     <---------MYB52(1)
               <---------At4g35610   --------->MYB52(1)              <-----------------AGL1
    --------->ZAT6  <---------O2     ----------->RAV1(1)             ----------------->AGL1
->DAG2         --------->At4g35610  --------->AtMYB61         <---------ANAC58    ----------------->AGL3
->DOF2  ---------->DOF2 <------ZmHOX2a(1)                     <---------ANAC58 --------->PCF5
 
ggaattaacacaaaagtatgctcacgaggacactggagaccaacagaagatgctaaactcaaggagcttgttgcccagtttggtccccaaaactggaact  5877600
                                                              <---------ICU4
                                 --------->AHL20(2)           --------->ATHB51
                        <---------------AtSPL8                <---------AHL20(2)
                      <------ZmHOX2a(2)                       --------->AHL20(2)
                  <--------P     <---------AHL20(2)          --------->ICU4
       ------->GAMYB --------->ARR11(3)                   <---------AHL20(2)
       <---------ALFIN1<-----------RAV1(2)                --------->AHL20(2)
      <---------MYB55(2)--------->MYB59                 <---------ANAC55(2)                  -------
      <---------MYB111(2)   <-------TEIL                --------->ANAC55(2)                 <-------
      --------->MYB46(3)<---------------AtSPL3    <---------YAB1          <----------DOF2  <--------
    <-----------GT1  <---------AGP1   <-----------GT1 <-----------GT1     <---------DAG2 --------->ARR14(2)
 
tgatttctaaccaccttcttggtagatcaggtacatttattttacttaaaattcttattacttaattatttccttcacttttgttactccaaattccgca  5877700
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AGI:  At5g17800.1   
Description:  AtMYB56 (myb domain protein 56); DNA binding / transcription factor. similar to MYB117 (myb domain protein 117), transcription factor [Arabidopsis thaliana] (TAIR:AT1G26780.1); similar to MYB105 (myb domain protein 105), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69560.1); similar to putative transcription factor [Oryza sativa (japonica cultivar-group)] (GB:BAD81105.1); similar to hypothetical protein OsJ_001233 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11408.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains In
Range:  from: 5877191    to: 5879333    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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