Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         ------>ZmHOX2a(1)      <---------------AGL15      --------------->AGL15     ----------------->AGL2     ----------------->AGL3     ----------------->AG     ----------------->AGL1  <---------ICU4 ------->SPL7                --------->ATHB51                                              <---------ARR14(2) --------ZAT14               <---------AHL20(2)                                            --------->ARR14(2) ------SPL7                  --------->AHL20(2)                                      --------->LBD16 -----ANAC46                <---------AHL20(2)                                      <---------LBD16 -----ANAC58              <---------ICU4                                           <---------LBD16<-- -----ANAC58 <---------TOE2(3)                        --------->At5g28300    <---------DAG2--------->GLK1(2) --------->AtSPL3   ----------->GT1               <-----------GT1            <----------DOF2   ------ ----------AtSPL8 --------->ICU4          <---------ANAC58          --------->MYB52(1)--------->LBD16 -DOF2--------->TOE2(3)  --------->ICU4   <---------ANAC58        <---------MYB52(2)--------->LBD16 <   gtacagttccttattaagaaattagtaaaaattatttcaagtttgcttaatttcactgtaatatagaaactaactaatacttttcccccggagaatcctg  5794900                        --------->LBD16                        --------->HSFB2a(2) --------->ARR11(3)     <---------HSFB2a(2) <---------ARR11(3)    <---------LBD16              <----------DOF2                <---------At5g28300 --------DOF2          --------->LBD16    <---------ANAC58                        <-----------GT1 >ZmHOX2a(1)    ------>ZmHOX2a(1)         <---------ANAC58           --------->AHL20(2)            <- ---------CCA1(2) <---------CCA1(2)   <----------DOF2                <---------AHL20(2)            <-   ctatatctcaacttaatcctatatccctggaagagccatacttttcttgataagcttttttgtttttgtttttaatttcaagttttaccgatttgatttt  5795000                                                                                              <------                               <---------ANAC58                                               <------     <---------GLK1(2)         <---------ANAC58                                               <------     --------->ARR11(3) <------MYB46(1)                          --------->HSFB2a(2) --------->ZAT18     <---------ARR11(3) <------MYB83                             <---------HSFB2a(2) <---------ZAT14 --------TOE2(3)     >>>>>>>>>SARD1   <---------MYB52(1)    <-----------RAV1(1)      --------->ZAT14 --------YAB1        >>>>>>>>>CBP60g <----------DOF2      <------------CBF         --------->ZAT14   taagatagatttttgtttctgaaatttggttttgtttgcctttggttctctgttttcatccattgttgcagaacacatgagactgagtactctgtttctt  5795100         <-------TEIL        --------->CCA1(2)                                                   <---------At4g35610       --------->ARR11(3)               <---------At4g35610              <-------TEIL     <---------YAB1  ------------>CBF   --------->At4g35610            <---------ARR14(2)         ---     <---------TOE2(3)      <-----------GT1                            --------->ARR14(2)         <-- ---ANAC46         ------->GAMYB      <-----------RAV1(2)              <---------GLK1(2)          --- ---ANAC58        <---------MYB52(2)------>ZmHOX2a(1)                 --------->At4g35610     ------- ---ANAC58       --------->At4g35610<-----------HVH21             <-----------HVH21      ------------   ggagattaagatacagagcaactcacaattctactatccttcagatgatcaaaaactcttacaaaaaatgtcagattcagataagaagaacagcaatgag  5795200                                                                                      <---------ANAC58                                           --------->YAB1                             <---------ANAC46                                           <---------ICU4                   <---------AHL20(1)           --------->TOE2(3)               <--------HAHB4                <---------AHL20(2)        --------->GLK1(1)                  --------->ATHB12              --------->AHL20(2)       --------->ARR11(3)                 --------->ICU4                 --------->YAB1 ----------->GT1                          <---------YAB1        <---------ARR11(3)    <---------ANAC58 ------>GLK1(2)               <---------TOE2(3)                 --------->ARR11(3)<------------CBF -------ARR14(2)      <---------AHL20(2)--------->YAB1         --------->GLK1(1) <---------ICU4 ------>ARR14(2)    <----------DOF2 <---------ZAT6             <---------GLK1(1) --------->ATHB12 -->YAB1<---------GLK1(1)    ---------->DOF2                  <---------ARR11(3)<-------TEIL >CBF  <---------ARR11(3)  <---------AHL20(2)                --------->YAB1 --------->ARR11(3)   ----   aatcggtaagatttcttaatctcttttattttaaagtagtattcatcattacgatgtaatccatgatatctctaattatatattcattgcttgaagaaat  5795300                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                      <---------ARR14(3)                      --------->ARR14(3)                      <---------GLK1(2)                      <-----------ARR10                      --------->ARR11(3)                      --------->AGP1 --------->DOF5.7(2)                      <---------ARR14(2)                      --------->ARR14(2)    --------->ALFIN1                      <---------ARR11(3)<---------TOE2(3)                     <---------CCA1(2)  <---------TOE1(3)      <---------At4g35610           --------->TOE2(3)          ---------->DOF2                      -      --------->At4g35610           --------->TOE1(3)     <----------DOF2                    <-------TEIL -------->CBF    ------->TEIL     <---------TOE2(3)      <---------ICU4   <-----------GT1--------->AHL20(2)   tcaatgtcagcatcatatgtatcagatcttcatatcaacgttaagggtgttccatttcatctttgcaaagtaagtttcactctattctccataaattcgt  5795400                                                                                <---------At4g35610                                                                                --------->At4g35610                     --------->TOE2(3)                                        --------->ZAT18                  <---------MYB52(1)                                     ---------->DOF2                <---------ANAC58                                    ------>ZmHOX2a(2)             <----------DOF2                                       <------ZmHOX2a(2)          <---------ALFIN1                                        --------->ARR11(3)       --------->ANAC58                                     ---------->DOF2   <---------ZAT18       --------->ANAC58                          <------ZmHOX2a(1)<---------ARR11(3)       ----------->HVH21                         =========================HOX2a_HOX2a --------->DOF2 <---------ANAC58                 ==========================HOX2a_HOX2a   tgaaaagactcgacactttcgtttcttaatttctctgtgtttgtttttgtaggaaatgttagcaaagagatcgtccaaagtgagctcattactcgagcga  5795500                        --------->TOE2(2)                        --------->TOE1(2)               <---------ANAC58               <---------ANAC46                            <---------At4g35610               <---------ANAC58                      --------->TOE2(3)              <-------TEIL                     --------->LBD16           --------->At4g35610                --------->HSFB2a(2)           --------->ZAT2------>ZmHOX2a(1)    <---------HSFB2a(2)           <---------At4g35610              <------ZmHOX2a(2)           <---------ZAT2==========================HOX2a_HOX2a          --------->GLK1(2)    ============================HOX2a_HOX2a<---------ARR14(2)          <---------GLK1(2)    <------ZmHOX2a(2)  ------>ZmHOX2a(2)   --------->ARR14(2)        ----------->ARR10   aacgagatcgatgagctgcgtttgatcctacgagatttagaagtcgatccagaaacctttgagctcgtcgctagattctgtaatggctctgaattcaagt  5795600                                 <---------ANAC58                                 --------->ANAC55(2)                                     <---------At4g35610                                 <---------ANAC58                                   --------->ANAC58                                 <---------ANAC46                      --------->ARR11(3)--------->At4g35610                                 <---------ANAC55(2)                   <-----------GT1   ----------->RAV1(2)                    --------->ZAT14                                 --------->YAB1  --------->ANAC58  <---------At4g35610       <---------AtLEC2                ---------->DOF2    --------->MYB59      -   ttacatctgataccatcgtctctgttctctgcatcgcgtattacttagggatgaatgaagaacaaagctctaataacttgttaggcaaggcatctgagtt  5795700                                                                                 <-----------RAV1(1)                                                                            <---------At4g35610                                                                            --------->At4g35610                         <---------ANAC46                                   <---------ZAT2       --------->DEAR3(1)<---------ANAC58           --------->LBD16     <---------STY1(2)   --------->ZAT14       <---------ANAC58           <---------At4g35610 --------->ZAT2   <---------ZAT14  --------->ZAT2                 <---------ANAC46     --------->STY1(2)   --------->ZAT18  --------->At4g35610         <-----------HVH21      --------->ANAC58 --------->DOF2     <---------ZAT2  <---------ICU4<-----------RAV1(2)  --------->ANAC58   cttagagcaccgagtttttccgagctggagtgagacaataaatgctcttcgttcaggggacaagagttttgacaagctagctgatgttggacttgttgat  5795800  Previous    Next  AGI:  At5g17580.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT3G03510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24302.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 5795304    to: 5797180    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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