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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------
---------
--------->
YAB1
--------->
TOE1(3)
--------->
AHL20(2)
----------->
GT1
---------
--------->
At4g35610
<---------
DAG2
<---------
ANAC55(2)
<---------
ATHB12
<------
ZmHOX2a(1)
<----------
DOF2
<---------
ATHB12
--------->
TOE2(3)
----->
DOF2
--------->
YAB1
--------->
WOX13(1)
--------->
AtMYB61
--------->
AtMYB61
atgcaggattagcttcaaaacaattagaaaactttttcaattaaaaattgaaatgaaatcgaccaaaatcaataagtaaaaccaaaaccctaatcaacag
5534900
--------->
GLK1(2)
--------->
ANAC55(2)
----------->
GT1
<----------
DOF2
<---------
ANAC55(2)
--------->
ALFIN1
--------->
At4g35610
<---------
ARR11(3)
<-
---------->
DOF2
<---------
ICU4
<---------
At4g35610
--------->
ARR11(3)
<---------
TOE2(3)
->
GAMYB
<---------
TOE2(3)
<---------
CCA1(2)
<---------
ARR14(2)
--------->
MYB52(1)
>
MYB52(1)
<---------
YAB1
----------->
HVH21
--------->
ARR14(2)
<----------
-->
RAV1(1)
----------->
GT1
<---------
At4g35610
<---------
ARR14(1)
<------
ZmHOX2a(2)
agatttaacaaagagaagaagagtgtgattaagaattgctactgac
agcttatctcgtaattcaagagtatctttaggtgttccgatcgaattaacgagg
5535000
------>
NtERF2
<---------
ATERF1(1)
--------->
ATERF1(1)
--------->
RAP2.3(1)
<---------
RAP2.3(1)
<---------
ATERF1(1)
------>
NtERF2
<---------
DEAR4(2)
<---------
ERF1
<---------
RRTF1(1)
<---------
ORA47(2)
<---------
RAP2.6(1)
<---------
ATERF1(2)
--------->
DEAR3(1)
--------->
ATERF1(2)
<---------
DEAR3(1)
===================================
<---------
RAP2.3(2)
========================
MYC_MYB
<---------
RAP2.3(3)
--------->
TGA1a
<---------
ABI4(1)
<---------
TGA1a
<------
NtERF2
--------->
ANAC46
--------->
ATERF1(1)
--------->
ANAC58
<---------
ATERF1(1)
--------->
O2
<---------
GLK1(1)
--------->
ANAC58
--------->
LBD16
----------->
HVH21
<---------
ALFIN1
================================
HOX2a_HOX2a
---
------>
ZmHOX2a(2)
--------->
DEAR3(1)
------>
ZmHOX2a(2)
---------
--------->
ARR14(2)
--------->
ORA47(2)
<------
ZmHOX2a(2)
<---------
ALFIN1
<---------
ARR14(2)
<------
NtERF2
------->
TEIL
--------->
MYB46(3)
<---------
ZAT2
------>
NtERF2
------>
ZmHOX2a(1)
<---------
ARR11(3)
-----
--------->
ALFIN1
--------->
LBD16
<---------
ARR14(2)
<---------
MYB55(2)
<---------
ANAC58
<---------
ARR14(2)
=================
HOX2a_HOX2a
---------->
ARF1
<---------
ANAC58
--------->
ARR14(2)
================
HOX2a_HOX2a
<---------
MYB52(1)
<---------
At4g35610
<---------
LBD16
--------->
ARR14(2)
<-------
GAMYB
------
-----
NtERF2
--------->
At4g35610
<---------
LBD16
--------->
LBD16
<---------
O2
<-----------
RAV1(1)
-
GT1
----------->
HVH21
------>
ZmHOX2a(1)
----------->
RAV1(2)
--------->
ARR11(3)
------
cggaagaaggaattgacagccgtgctgatcctgaaaatcccggcggcgacctcctgagatggatccccacgagacgaaggtctctgttgtctcccaccgg
5535100
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR11(3)
--------->
LBD16
--------->
DEAR3(1)
--------->
ATERF1(1)
<---------
LBD16
<------
NtERF2
--------->
RAP2.3(1)
<---------
RRTF1(1)
<---------
RAP2.6(1)
<---------
ATERF1(1)
------>
NtERF2
<---------
ERF1
<---------
RAP2.3(1)
--------->
RAP2.3(1)
------>
ZmHOX2a(2)
--------->
ATERF1(1)
<------
ZmHOX2a(2)
<---------
ATERF1(1)
<---------
ARR11(3)
<---------
RAP2.3(1)
<---------
ARR14(2)
<---------
ORA47(2)
--------->
ARR14(3)
<---------
DEAR3(1)
--------->
ARR14(2)
--------->
ARR11(1)
--------->
AGP1
--------->
GLK1(2)
<---------
ARR14(2)
--------->
ARR11(3)
<---------
HSFB2a(2)
========
bZIP_DOF
--------->
GLK1(1)
<---------
ARR14(3)
<---------
ARR11(1)
------->
DOF2
<---------
ANAC46
--------->
HSFB2a(2)
------->
TEIL
----
>
MYB52(1)
--------->
DEAR3(1)
<---------
HSFB2a(2)
<---------
GLK1(2)
<-----
---->
At5g28300
<------
NtERF2
--------->
At4g35610
<---------
CCA1(2)
--------->
ZAT6
----->
GT1
<---------
DEAR3(1)
<---------
ZAT2
--------->
HSFB2a(2)
<---------
CCA1(2)
--->
LBD16
<---------
RAP2.3(2)
--------->
ZAT2
<---------
CCA1(2)
--------->
HSFB2a(2)
<-----
taaaacgattcggcgccggagatcgagtaccagcttcgagatcttggaaactcat
cgtctcttctctcgaatctctcgaaattctcttatctctatctca
5535200
--------->
YAB1
----------->
GT1
<------
MYB46(1)
--------->
At4g35610
--------->
TOE2(3)
<------
MYB83
--------->
YAB1
--------->
MYB52(1)
<---------
ANAC55(2)
----------->
GT1
--------->
TOE1(2)
<---------
ANAC46
<---------
TOE1(3)
--------->
MYB46(3)
--------->
MYB59
<---------
TOE2(3)
<---------
MYB52(2)
--------->
MYB46(2)
<---------
AHL20(2)
----------->
GT1
----->
LBD16
--------->
MYB111(2)
<---------
AHL20(2)
<---------
YAB1
---
----
LBD16
--------->
MYB111(1)
--------->
AHL20(1)
<---------
AHL20(2)
<-
------
RAV1(2)
<---------
YAB1
<---------
MYB55(1)
*
TSS
--------->
AHL20(2)
--------->
YAB1
<------
ggggaacaaacgaagacgaagatgatggaaatgagttaggtgaattataagtttt
cccaaaatttaatgttaatttttgttttataatttgtataaatca
5535300
--------->
ANAC55(1)
--------->
bZIP60(2)
--------->
ANAC58
<------
NtERF2
--------->
At5g28300
<-----------
HVH21
<---------
MYB46(3)
<---------
ANAC46
----------------------->
TaNAC69(2)
<---------
AHL20(2)
------
--------->
AHL20(2)
-------
--------->
AHL20(1)
--------->
ATHB51
-------
<-----------
RAV1(1)
--------->
AHL20(2)
--------->
ANAC46
<---------
ARR14(2)
--------->
ARR14(2)
--------->
AHL20(2)
--------->
ATHB12
--------->
ARR14(2)
--------->
LBD16
<---------
ANAC46
<---------
ANAC46
<---------
DEAR3(1)
--------->
GLK1(2)
<------
NtERF2
--------->
ALFIN1
<---------
ANAC55(2)
--------->
ANAC58
<---------
HSFC1(2)
<---------
DEAR3(1)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
ANAC58
<---
--------->
PCF5
<---------
MYB46(3)
--------->
ANAC55(2)
<---------
ALFIN1
--------->
HSFB2a(1)
--------->
ALFIN1
--------->
ALFIN1
<---------
YAB1
<---------
AHL20(1)
<---------
ANAC46
<---
------>
AHL20(2)
<---------
ANAC46
<---------
ANAC46
----------->
GT1
<---------
DREB2C(2)
--------->
HSFC1(2)
--------
AHL20(2)
<---------
ARR14(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
ANAC58
<---
---
ATHB12
<---------
SPL7
<---------
AtMYB61
<---------
ANAC55(1)
----------->
HVH21
<---------
HSFB2a(1)
tttaatctcatgtggtccgcgtgaatatggtggtggagggaatttattaatacgtataaattatttggcggtgacacgccattgcgagggaagaatcctg
5535400
<---------
ANAC46
<---------
ANAC55(1)
------>
MYB83
--------->
ZAT2
<---------
WRKY18(1)
--------->
WRKY12
<---------
ANAC58
--------->
WRKY38(1)
--------->
LBD16
<---------
MYB46(3)
<---------
MYB46(3)
<---------
ANAC58
<------
MYB46(1)
<-------
GAMYB
<---------
ZAT2
<------
ZmHOX2a(1)
<---------
ANAC46
------>
MYB46(1)
<------
MYB83
----------
>
ZmHOX2a(1)
--------->
At4g35610
<------
MYB46(1)
<------
MYB83
-->
TOE2(2)
--------->
AtMYB61
--------->
REM1(2)
--------->
ATHB12
<------
ZmHOX2a(1)
-->
TOE1(2)
--------->
bZIP60(1)
--------->
LBD16
<---------
AtLEC2
-
------
ANAC58
<---------
At4g35610
<---------
ZAT14
<---------
ANAC46
--------->
ATHB12
------
ANAC58
----------->
RAV1(2)
<---------
HSFB2a(2)
<---------
ANAC58
<---------
TOE2(3)
------
ANAC46
<---------
ALFIN1
--------->
HSFB2a(2)
<---------
ANAC58
<---------
TOE1(3)
cgtgtcgttgttgacctcacctgcccttccgtgtaaaattgaaactcggttcgagtaaaccggaccaattgagtgggtttgcaggataaggattggttaa
5535500
---------->
DOF2
<-----------
GT1
<----------
ID1
--------->
ICU4
<-
->
GT1
---------->
DOF2
--------->
ALFIN1
<----------
DOF2
--------
-------->
ARR11(3)
<---------
ZAT14
--------->
ALFIN1
<---------
DAG2
<--------
atgattttgggctacattggagtttagtaaaaggaaaagagaagagttgggccaaaaacaaggagaagtccaacttttttgtaattaccaagttatcata
5535600
--------->
YAB1
--------->
ATHB51
<--------
HAHB4
<---------
ICU4
-------->
HAHB4
--------->
YAB1
<--------
ATHB1
<---------
ATHB51
--------->
ICU4
--------->
AHL20(2)
--------->
HSFB2a(2)
=================================================
MADS_MADS
<---------
YAB1
<---------
HSFB2a(2)
<---------------
AGL15
<----------
DOF2
--------->
DAG2
--------->
YAB1
<---------
DAG2
<---------
AHL20(2)
--------->
AHL20(2)
<---------------
AGL15
<---------
AHL20(1)
<---------
YAB1
<---------
At5g28300
---------->
DOF2
--------->
ARR11(3)
--------
AHL20(2)
<-----------
GT1
<---------
ANAC55(2)
--------->
AHL20(1)
<-----
->
YAB1
<---------
AHL20(2)
<-------
TEIL
<---------
YAB1
--------->
YAB1
---------->
DOF2
--
-
YAB1
--------->
AHL20(2)
<----------
DOF2
--------------->
AGL15
<---------
ARR11(3)
----------->
GT1
ttttatgactgaattaataattacagtaatcactttgatacataaaccactttttatagaaaaacaatgatatatttttgttgataaaaagtaaaatttt
5535700
--------->
ANAC46
--------->
ANAC58
<---------
ANAC55(2)
--------->
ANAC55(2)
--------->
ANAC58
<---------
ICU4
--------->
ATHB51
--------->
YAB1
<--------
ATHB1
-------->
HAHB4
<---------
AHL20(2)
<---------
ATHB51
-
--------->
ICU4
--------->
HSFC1(2)
--------->
ARR11(3)
<---------
AHL20(2)
<---------
YAB1
--------->
HSFB2a(1)
----------->
GT1
--
------->
TEIL
<---------
AHL20(2)
<-----------
GT1
<----------
DOF2
<----------
ID1
<---------
ARR11(3)
----
AHL20(2)
--------->
AHL20(2)
<---------
ZAT6
------>
ZmHOX2a(1)
----------->
GT1
--------->
AHL20(1)
------->
ANAC55(2)
--------->
TOE2(3)
<---------
HSFC1(2)
----------->
GT1
--------->
AHL20(2)
tatgtatttttttctaataaaacataaacttaataattgtgttacgaaactcctaacttttgttttgaactgaagagggaaaaaatagaaatatatacta
5535800
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AGI:
At5g16830.1
Description:
SYP21 (syntaxin 21); SNAP receptor. Identical to Syntaxin-21 (SYP21) [Arabidopsis Thaliana] (GB:Q39233); similar to VAM3 (syntaxin 22), SNAP receptor [Arabidopsis thaliana] (TAIR:AT5G46860.1); similar to syntaxin-like protein [Brassica oleracea] (GB:ABB83612.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989)
Range:
from: 5532849
to: 5535255
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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