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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                              ------
                                                                                           ---------
                                     --------->YAB1                                 --------->TOE1(3)
                                     --------->AHL20(2)               ----------->GT1      ---------
       --------->At4g35610  <---------DAG2                            <---------ANAC55(2)<---------ATHB12
  <------ZmHOX2a(1)         <----------DOF2                         <---------ATHB12--------->TOE2(3)
----->DOF2          --------->YAB1--------->WOX13(1)       --------->AtMYB61  --------->AtMYB61
 
atgcaggattagcttcaaaacaattagaaaactttttcaattaaaaattgaaatgaaatcgaccaaaatcaataagtaaaaccaaaaccctaatcaacag  5534900
                                                                 --------->GLK1(2)
                                                   --------->ANAC55(2)
                                                   ----------->GT1  <----------DOF2
                                                   <---------ANAC55(2)    --------->ALFIN1
                                           --------->At4g35610   <---------ARR11(3)               <-
     ---------->DOF2         <---------ICU4<---------At4g35610   --------->ARR11(3)       <---------TOE2(3)
->GAMYB                    <---------TOE2(3)  <---------CCA1(2)  <---------ARR14(2)      --------->MYB52(1)
>MYB52(1)            <---------YAB1   ----------->HVH21          --------->ARR14(2)      <----------
-->RAV1(1)         ----------->GT1  <---------At4g35610         <---------ARR14(1)<------ZmHOX2a(2)
 
agatttaacaaagagaagaagagtgtgattaagaattgctactgacagcttatctcgtaattcaagagtatctttaggtgttccgatcgaattaacgagg  5535000
                                           ------>NtERF2
                                           <---------ATERF1(1)
                                         --------->ATERF1(1)
                                         --------->RAP2.3(1)
                                        <---------RAP2.3(1)
                                        <---------ATERF1(1)
                                        ------>NtERF2
                                        <---------DEAR4(2)
                                        <---------ERF1
                                        <---------RRTF1(1)
                                        <---------ORA47(2)
                                        <---------RAP2.6(1)
                                       <---------ATERF1(2)
                                       --------->DEAR3(1)
                                       --------->ATERF1(2)
                                       <---------DEAR3(1)        ===================================
                                       <---------RAP2.3(2)       ========================MYC_MYB
                                       <---------RAP2.3(3)       --------->TGA1a
                                      <---------ABI4(1)          <---------TGA1a
                                      <------NtERF2              --------->ANAC46
                                      --------->ATERF1(1)        --------->ANAC58
                                     <---------ATERF1(1)         --------->O2
                               <---------GLK1(1)                 --------->ANAC58
                           --------->LBD16----------->HVH21    <---------ALFIN1
                         ================================HOX2a_HOX2a                             ---
                         ------>ZmHOX2a(2)--------->DEAR3(1)------>ZmHOX2a(2)              ---------
                       --------->ARR14(2)--------->ORA47(2)<------ZmHOX2a(2)              <---------ALFIN1
                       <---------ARR14(2)<------NtERF2    ------->TEIL                   --------->MYB46(3)
                   <---------ZAT2    ------>NtERF2------>ZmHOX2a(1)        <---------ARR11(3)  -----
                  --------->ALFIN1   --------->LBD16      <---------ARR14(2)             <---------MYB55(2)
                <---------ANAC58<---------ARR14(2)=================HOX2a_HOX2a       ---------->ARF1
                <---------ANAC58--------->ARR14(2)================HOX2a_HOX2a     <---------MYB52(1)
              <---------At4g35610   <---------LBD16       --------->ARR14(2)     <-------GAMYB------
-----NtERF2   --------->At4g35610  <---------LBD16--------->LBD16<---------O2   <-----------RAV1(1)
-GT1     ----------->HVH21 ------>ZmHOX2a(1)    ----------->RAV1(2)        --------->ARR11(3) ------
 
cggaagaaggaattgacagccgtgctgatcctgaaaatcccggcggcgacctcctgagatggatccccacgagacgaaggtctctgttgtctcccaccgg  5535100
                  <------ZmHOX2a(2)
                 <---------ARR14(2)
                 --------->ARR11(3)
             --------->LBD16
            --------->DEAR3(1)
           --------->ATERF1(1)
           <---------LBD16
           <------NtERF2
           --------->RAP2.3(1)
          <---------RRTF1(1)
          <---------RAP2.6(1)
          <---------ATERF1(1)
          ------>NtERF2
          <---------ERF1
          <---------RAP2.3(1)
        --------->RAP2.3(1)           ------>ZmHOX2a(2)
        --------->ATERF1(1)          <------ZmHOX2a(2)
       <---------ATERF1(1)          <---------ARR11(3)
       <---------RAP2.3(1)          <---------ARR14(2)
       <---------ORA47(2)           --------->ARR14(3)
      <---------DEAR3(1)            --------->ARR14(2)
   --------->ARR11(1)               --------->AGP1                           --------->GLK1(2)
   <---------ARR14(2)               --------->ARR11(3)                 <---------HSFB2a(2)
========bZIP_DOF--------->GLK1(1)   <---------ARR14(3)            <---------ARR11(1)
------->DOF2<---------ANAC46     --------->HSFB2a(2)              ------->TEIL                  ----
>MYB52(1)--------->DEAR3(1)      <---------HSFB2a(2)             <---------GLK1(2)            <-----
---->At5g28300<------NtERF2 --------->At4g35610                  <---------CCA1(2)    --------->ZAT6
----->GT1<---------DEAR3(1) <---------ZAT2                    --------->HSFB2a(2)  <---------CCA1(2)
--->LBD16<---------RAP2.3(2)--------->ZAT2           <---------CCA1(2) --------->HSFB2a(2)    <-----
 
taaaacgattcggcgccggagatcgagtaccagcttcgagatcttggaaactcatcgtctcttctctcgaatctctcgaaattctcttatctctatctca  5535200
                                         --------->YAB1
                                  ----------->GT1
                                  <------MYB46(1)
                                  --------->At4g35610           --------->TOE2(3)
                                  <------MYB83                  --------->YAB1
    --------->MYB52(1)            <---------ANAC55(2)          ----------->GT1
   --------->TOE1(2)              <---------ANAC46            <---------TOE1(3)
  --------->MYB46(3)             --------->MYB59              <---------TOE2(3)
  <---------MYB52(2)             --------->MYB46(2)         <---------AHL20(2)       ----------->GT1
----->LBD16                      --------->MYB111(2)       <---------AHL20(2)   <---------YAB1   ---
----LBD16                        --------->MYB111(1)       --------->AHL20(1)   <---------AHL20(2)<-
------RAV1(2)     <---------YAB1<---------MYB55(1)    *TSS --------->AHL20(2) --------->YAB1 <------
 
ggggaacaaacgaagacgaagatgatggaaatgagttaggtgaattataagttttcccaaaatttaatgttaatttttgttttataatttgtataaatca  5535300
                                                                        --------->ANAC55(1)
                                                                        --------->bZIP60(2)
                                                                        --------->ANAC58
                                                                  <------NtERF2
                                                                  --------->At5g28300
                                                                  <-----------HVH21
                                                                 <---------MYB46(3)
                                                                <---------ANAC46
                                                           ----------------------->TaNAC69(2)
                                                        <---------AHL20(2)                    ------
                                                        --------->AHL20(2)                   -------
                                       --------->AHL20(1)--------->ATHB51                    -------
                       <-----------RAV1(1)           --------->AHL20(2) --------->ANAC46  <---------ARR14(2)
                    --------->ARR14(2) --------->AHL20(2)--------->ATHB12                 --------->ARR14(2)
              --------->LBD16<---------ANAC46   <---------ANAC46<---------DEAR3(1)        --------->GLK1(2)
              <------NtERF2  --------->ALFIN1   <---------ANAC55(2)     --------->ANAC58<---------HSFC1(2)
            <---------DEAR3(1)         <---------AHL20(1)--------->AHL20(2)     <---------ANAC58<---
           --------->PCF5  <---------MYB46(3)   --------->ANAC55(2)   <---------ALFIN1  --------->HSFB2a(1)
        --------->ALFIN1  --------->ALFIN1<---------YAB1<---------AHL20(1)      <---------ANAC46<---
------>AHL20(2)<---------ANAC46 <---------ANAC46----------->GT1 <---------DREB2C(2)     --------->HSFC1(2)
--------AHL20(2)    <---------ARR14(2) <---------AHL20(2)<---------AHL20(2)     <---------ANAC58<---
---ATHB12 <---------SPL7  <---------AtMYB61     <---------ANAC55(1)----------->HVH21    <---------HSFB2a(1)
 
tttaatctcatgtggtccgcgtgaatatggtggtggagggaatttattaatacgtataaattatttggcggtgacacgccattgcgagggaagaatcctg  5535400
                         <---------ANAC46
                         <---------ANAC55(1)
                  ------>MYB83
               --------->ZAT2
        <---------WRKY18(1)
       --------->WRKY12  <---------ANAC58
       --------->WRKY38(1)--------->LBD16                                                 <---------MYB46(3)
    <---------MYB46(3)   <---------ANAC58                                                 <------MYB46(1)
  <-------GAMYB<---------ZAT2                                                   <------ZmHOX2a(1)
 <---------ANAC46 ------>MYB46(1)                                      <------MYB83       ----------
>ZmHOX2a(1)    --------->At4g35610                                     <------MYB46(1)    <------MYB83
-->TOE2(2) --------->AtMYB61--------->REM1(2)                     --------->ATHB12    <------ZmHOX2a(1)
-->TOE1(2)--------->bZIP60(1)                            --------->LBD16     <---------AtLEC2      -
------ANAC58   <---------At4g35610                  <---------ZAT14<---------ANAC46   --------->ATHB12
------ANAC58   ----------->RAV1(2)              <---------HSFB2a(2)<---------ANAC58 <---------TOE2(3)
------ANAC46 <---------ALFIN1                   --------->HSFB2a(2)<---------ANAC58 <---------TOE1(3)
 
cgtgtcgttgttgacctcacctgcccttccgtgtaaaattgaaactcggttcgagtaaaccggaccaattgagtgggtttgcaggataaggattggttaa  5535500
                               ---------->DOF2                                   <-----------GT1
                            <----------ID1                                      --------->ICU4    <-
->GT1                    ---------->DOF2   --------->ALFIN1           <----------DOF2       --------
-------->ARR11(3)  <---------ZAT14        --------->ALFIN1            <---------DAG2       <--------
 
atgattttgggctacattggagtttagtaaaaggaaaagagaagagttgggccaaaaacaaggagaagtccaacttttttgtaattaccaagttatcata  5535600
                       --------->YAB1
              --------->ATHB51
              <--------HAHB4
              <---------ICU4
              -------->HAHB4
              --------->YAB1
              <--------ATHB1
             <---------ATHB51
             --------->ICU4
             --------->AHL20(2)                     --------->HSFB2a(2)
             =================================================MADS_MADS
             <---------YAB1                         <---------HSFB2a(2)
             <---------------AGL15            <----------DOF2                       --------->DAG2
           --------->YAB1                     <---------DAG2          <---------AHL20(2)
          --------->AHL20(2)                  <---------------AGL15<---------AHL20(1)
 <---------YAB1   <---------At5g28300  ---------->DOF2             --------->ARR11(3)
--------AHL20(2) <-----------GT1    <---------ANAC55(2)            --------->AHL20(1)         <-----
->YAB1    <---------AHL20(2)       <-------TEIL  <---------YAB1 --------->YAB1     ---------->DOF2--
-YAB1    --------->AHL20(2)  <----------DOF2  --------------->AGL15<---------ARR11(3)----------->GT1
 
ttttatgactgaattaataattacagtaatcactttgatacataaaccactttttatagaaaaacaatgatatatttttgttgataaaaagtaaaatttt  5535700
                                        --------->ANAC46
                                        --------->ANAC58
                                        <---------ANAC55(2)
                                        --------->ANAC55(2)
                                        --------->ANAC58
                              <---------ICU4
                              --------->ATHB51
                              --------->YAB1
                              <--------ATHB1
                              -------->HAHB4
                             <---------AHL20(2)
                             <---------ATHB51                                                      -
                             --------->ICU4 --------->HSFC1(2)                          --------->ARR11(3)
    <---------AHL20(2)       <---------YAB1 --------->HSFB2a(1)                   ----------->GT1 --
 ------->TEIL <---------AHL20(2)      <-----------GT1<----------DOF2     <----------ID1 <---------ARR11(3)
----AHL20(2)  --------->AHL20(2)   <---------ZAT6------>ZmHOX2a(1)       ----------->GT1--------->AHL20(1)
------->ANAC55(2)       --------->TOE2(3)   <---------HSFC1(2)          ----------->GT1--------->AHL20(2)
 
tatgtatttttttctaataaaacataaacttaataattgtgttacgaaactcctaacttttgttttgaactgaagagggaaaaaatagaaatatatacta  5535800
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AGI:  At5g16830.1   
Description:  SYP21 (syntaxin 21); SNAP receptor. Identical to Syntaxin-21 (SYP21) [Arabidopsis Thaliana] (GB:Q39233); similar to VAM3 (syntaxin 22), SNAP receptor [Arabidopsis thaliana] (TAIR:AT5G46860.1); similar to syntaxin-like protein [Brassica oleracea] (GB:ABB83612.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989)
Range:  from: 5532849    to: 5535255    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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