Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                        <xxxxxxxxxxxx                                                                                 <---------RVE1(1)                                                                                 <---------CCA1(1) <-                                                                                --------->ARR11(3)---                                                                            --------->LBD16    ------  <---------ARR14(2)                    ---------->ID1                     <---------ANAC46    <-----  --------->ARR14(2)         --------->AHL20(2)                            <---------HSFB2a(2) ------  <---------PCF2             <---------AHL20(2)                           <---------LBD16    <------- ---------MYB46(3)          <---------AHL20(2)                 <---------TOE2(3)<---------ARR11(3)--- --------RAV1(1)            --------->AHL20(2)       <-----------GT1    <---------ARR14(2)  xxxxxxxxx ----->RAV1(2)        ----------->GT1  <-----------GT1      <----------DOF2--------->HSFB2a(2)-------   tgtggttccccttgtttccatagttcgtaattttattcgtttttcgtcttaagttttcccttctttaggtttagtttccggagatatttttgttttccgc  5450300       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <----------DOF2 ----->RAP2.3(2) ----->DREB2C(2) ----->RAP2.3(3) ----->ATERF1(2) ------ATERF1(2) ----->DEAR3(1) ------DEAR3(1) ---->DEAR4(2) ---->ORA47(2) ---->ATERF1(1) -----LBD16 xxxxxxxsmallRNA(si3) -----NtERF2 --->NtERF2                          <-----------GT1 >NtERF2                    <----------DOF2 ----ATERF1(1)            <---------DAG2         <<<<<<<<<<<<<<<<<LFY        <----------ID1 --->LBD16               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->HSFB2a(2) --LBD16               <---------ALFIN1        --------->YAB1    <---------HSFB2a(2) ------>LBD16 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <---------LBD16 xxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->GLK1(2)  ---------->DOF2 ---- -->ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ----------->GT1     ---------->DOF2-----------   cggctttgtgtttcaaatttgtattccaccctttgtatttcacaacctataatacaatggaaaaattctggatgaaaaaaagaaaaagaacacagtatat  5450400                                                                  --------->AHL20(2)                                                                --------------->AGL15                                                                <---------------AGL15                                                               --------->TOE2(3)                                                               ----------------->AGL3                                                      <---------ZAT14                                                      --------->ZAT14       --------->ANAC55(2)                                                      --------->ZAT18      <-------TEIL                                                      <---------REM1(2)   --------->ARR14(1)                                                    --------->ZAT18       --------->CCA1(2)               <---------ZAT14                      --------->ZAT14      <---------ARR14(2)               --------->ZAT14                      <---------ZAT18      --------->ARR14(2)   --------->GLK1(2)    <---------YAB1              <---------ZAT14    ----------->ARR10   <---------ARR11(3) --------->YAB1 <---------At4g35610       <-----------------AGL3               - ------->GT1 --------------->AtSPL8  --------->At4g35610    <---------GLK1(2)                   <---- >GT1      --------->YAB1--------->ATHB12         <---------------AtSPL8 --------->ARR11(1)   -------   agaaaaatctgaatcacagtactaacatcattgattttctgctacaaaaatgagtgtacactgattcttaaaatagatacgggctataacataacaaaaa  5450500                                                                                           --------->At5g28300                            <---------HSFB2a(2)                                           -----------                        <---------ICU4                    <---------MYB52(1)             <---------DEAR3(1)                        --------->YAB1               <---------ALFIN1                 ----------->HVH21       <---------ANAC46--------->ICU4           --------->bZIP60(1)                 <---------ICU4    --------->ALFIN1   <---------ATHB12         <---------bZIP60(1)                 ------>ZmHOX2a(2) --------->DAG2===========================================bZIP_DOF                --------->ARR11(3) --------->DOF2<----------DOF2                  --------->TGA1a                <---------WOX13(1) --- ------ID1    <---------ANAC58 ===========================bZIP_DOF           --------->ATHB12     --- --->DOF2     <---------ANAC58 ---------->DOF2  --------->ANAC46  <---------YAB1  <---------ARR11(3)   gaaaaagtgggggatggcttttgcaataatctcgaaagagtttctcactcacatcacacccttggtttataaataaaactcattgatcttgacggtgaaa  5450600                                            <---------ALFIN1          <---------MYB52(1)               --------->ZAT14        ----------->GT1                    <---------ZAT14      <---------ZAT2                      <<<<<<<<<<<<<<<<<LFY                                     <-      ----------->RAV1(2)           --------->ANAC46                                               *TSS    <---------ALFIN1             --------->ZAT14    ------>ZmHOX2a(2)                           -----    --------->DEAR3(1)           <---------ZAT18  <---------ARR14(2)                           ------ >GT1------>NtERF2           --------------->AtSPL3<------ZmHOX2a(2)                           ------ ------>CCA1(1)        <---------TOE2(3)--------->At4g35610   <---------ZAT6                   <----- ------>RVE1(1) ----------->GT1  <---------ZAT14  --------->ARR14(2)                          <------   atatcgccacctgttaatttgtaaaaaggtttcagtacacttagctacactggatccaagtctagtgctaaactcaaacctcgtggttttagaccaaaat  5450700    <<<<<<<<<TBF1            --------->ARR11(3) -----------------------ANAC81 ---->RVE1(1)                <---------ARR11(1) --->ARR11(3)                <---------ARR11(3)    --------->GLK1(2) --->GLK1(2)                <---------CCA1(2)     <---------GLK1(2) ----ARR11(3)             --------->YAB1     ----------->RAV1(1)                 <----------DOF2 ---GLK1(2)           ------>ZmHOX2a(1)     --------->ANAC46         ------>ZmHOX2a(1)     ----------   ctcttcttcttcgtttccttcttcctcatcatatctttcatcttctccaccagaatttgttttaggctctccttcttctgtttctttttctcccaaagaa  5450800                   -------->P                <---------DAG2                <---------MYB59                --------->TOE2(3)                --------->TOE1(3)              --------->GLK1(2)              <-----------ARR10       <---------GLK1(2)     --------->ARR11(3)              <---------ZAT2    <---------MYB52(1)     <---------ARR14(2)              <---------At4g35610     --------->ARR11(1)              --------->At4g35610 --------->ATHB12   ----------->ARR10         <---------ANAC58        ----------->GT1           ------>ZmHOX2a(1) >DOF2--------->CCA1(2)      <---------ANAC58   ---------->DOF2         <-----------GT1   acaattagatatggagaaccttaccctagtttcttgctcagcttcttctccaaagctgttaattggatgcaatttcacttcctcgctgaaaaaccctact  5450900                                                                                        --------->ZAT14                                            --------->ARR11(3)                          --------->ZAT18                                            <---------ARR14(2)                          <---------ZAT14                                            <---------ARR11(3)                     --------->LBD16                                           --------->CCA1(1)                      --------->HSFB2a(2)                                 --------->ALFIN1            --------->YAB1      --------->SPL7                                <---------MYB52(1)    --------->At4g35610        <---------LBD16                               --------->LBD16        <---------At4g35610      <-----------HVH21                             <---------LBD16--------->ARR14(2)                 <---------SPL7                            ------>ZmHOX2a(1)      <---------At4g35610        <---------ANAC58     --                 ------>ZmHOX2a(1)         --------->RVE1(1) --------->TOE2(3)<---------ANAC58    <--   gggttttctcgtcggactcctaatattgtcctccggtgttccaaaatatctgcctctgctcaatctcaatctccctcttcgcgtccggagaacactggag  5451000                                  --------->YAB1                                 <---------YAB1                            --------->ANAC58                            --------->ANAC58                                             --------->TOE2(3)      --------->MYB52(2)  <---------ALFIN1                       <-----------GT1         --------->YAB1    <--------P         --------->ANAC46                  --------->LBD16            <<<<<<<<<GATA-1    <---------MYB52(1) --------->ANAC58                 --------->HSFB2a(2)        <-----------GT1 ---------->MYB.PH3(1) --------->ANAC58                 <---------HSFB2a(2)    <----------DOF2 -------GLK1(1)      --------->ANAC46                  <---------LBD16      <-----------GT1   aaatcggttagtttgcaaattccactcgacactctattatagcaaatgccaaaattttccggaaaaatttccagtttattacttttatctatcttattga  5451100               <----------DOF2               <---------DAG2           ------->TEIL                             <---------ARR11(3)          --------->ARR14(2)        <---------ANAC58                            --------->ARR11(3)   <----------DOF2        <---------ANAC58----------->GT1            <---------CCA1(2)  <---------ALFIN1              -       --------------->AtSPL8            <---------YAB1       --------->AHL20(2)<---------ARR14(2)  <   aactcaaattgcgaacccttttcgactggtttaatatgagcttatgaattgctatatctcttaaaaaaatccacactttgtgaatttgcaatttgaattc  5451200  Previous    Next  AGI:  At5g16620.1    Description:  PDE120 (PIGMENT DEFECTIVE EMBRYO). similar to unnamed protein product [Vitis vinifera] (GB:CAO16424.1); contains InterPro domain Heat shock chaperonin-binding (InterPro:IPR006636) Range:  from: 5450699    to: 5454538    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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