Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->LBD16                                                                     <---------HSFC1(1)                                                                     --------->HSFB2a(2)                                                       --------->ZAT2--------------->AGL15                                                --------->WRKY18(1)  <---------HSFB2a(2)               --------->WRKY18(1)             <-----------HVH21    ----------------->AGL3              <-----------HVH21       <---------ANAC46 <---------ZAT2--------->HSFC1(1)            ------>ZmHOX2a(2)       <---------MYB46(3) <---------At4g35610      <---------LBD16     ---------->ID1 <---------ZAT14 ----------->HVH21 >AtMYB61 --------->ARR14(2)    <---------AtMYB61      --------->At4g35610               <---------GLK1(1) -ALFIN1  <---------ARR14(2)  <----------DOF2<---------ZAT6---------->DOF2   ----------->GT1   ------   gtctcttctctggatcggtcattgttttctcgctttggtggtgagtagtggtcatggagctgaaagagtttccagaaattggtagaattggaactcgctg  5172400                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                             --------              <------MYB46(1)                                                           --------->LBD16              <------MYB83                                                            <---------LBD16       --------->STY1(2)                                                        --------->DAG2-------       <---------STY1(2)                                                       ======================      --------->ANAC58                                                         ---------->DOF2-------      --------->ANAC58                                                   --------->ANAC46    <-------   <------NtERF2                                                         --------->ANAC58  --------->ZAT2 <---------ANAC58                                               --------->At4g35610   --------->ATERF1(1) <---------ANAC46                                               ----------->RAV1(2)  --------->ZAT2 < <---------ANAC58                                               <---------At4g35610  --------->At4g35610 ----->HVH21--------->ALFIN1------->TEIL         <---------AtLEC2        --------->ANAC58<------NtERF2   atggcgtctagcaagtgggtttgcagaatgaacctctgaatcacaggctgtgcatagagaggcatcatctgcctcacacaaaaaagcagccggagcacgc  5172500                                <------NtERF2                      ------->MYC3 -------->ANAC55(2)   <-------MYC3 --------->ANAC58 -------->TGA1a   <---------ARR14(2)    --------->ANAC58 -------->O2    ----------->HVH21  --------->ANAC58 ---------TGA1a --------->LBD16--------->LBD16         <---------ZAT14 ->ZAT18      <---------LBD16 <---------ANAC58         --------->ZAT18                           <--- -->ANAC58  <---------ARR14(2)<---------ANAC46         --------->ZAT14                      <-------- =========bZIP_DOF--------->ARR14(2)    --------->ANAC58                    --------->AtLEC2--------- -->ANAC58--------->DEAR3(1) <---------LBD16           <---------ZAT18 --------->At4g35610  --------- --ZAT18----------------------->TaNAC69(2) --------->ATHB12            <---------At4g35610 <---------ARR14(2) ---------O2--------->ARR14(2)<---------ANAC58     <------NtERF2       <---------ZAT2      <---------GLK1(2)   tcacatgactcgcagacccggacacgtttatggcgggaagcaacgcgattggcagagtgaacttgagcatcacagctcatgcacaagtaggcagaatctg  5172600                      --------->WRKY12                      ----------->HVH21                      --------->WRKY38(1)                    <-------GAMYB                  <---------ANAC58                  <---------ANAC58         --------->ALFIN1              --------->ATERF1(1)  ----------->HVH21              <-----------RAV1(2) <-----------HVH21             --------->ABI4(2)  ------->MYC2      <---------REM1(2)<---------WRKY18(1)<-----------HVH21 ------AtLEC2--------->ZAT14    ------->MYC3     <---------ANAC46 -ARR14(2)   <---------ZAT14    <-------MYC3<---------ANAC58 >ARR14(2)  --------->ALFIN1    <-------MYC2<---------ANAC58               ----------->GT1    ------- >GLK1(2)--------->ANAC46   <---------MYB52(1) --------->ZAT18--------->ZAT14<---------MYB52(1)  ----   catggcaatacacggtgcaggcgtttgaccggcatgtgtcacagggtcgtgccctgttgttctctccactacctatgtcgttactctcttgtttcaacat  5172700                                       --------->At4g35610                                       <---------At4g35610                                      <---------ARR14(2)                                      --------->ARR14(2)                                     <---------CCA1(2)                                --------->At4g35610                                --------->ZAT2                                <---------At4g35610                                <---------ZAT2                           <---------ANAC46                              <---------PCF2                             <---------ANAC58                           --------->ALFIN1                        <---------ARR14(2)      --------->At4g35610<---------ANAC46                          --------->ARR11(3)             ===      <---------At4g35610<---------ANAC58                    *TSS----------->ARR10                <-- -->YAB1<---------REM1(1)--------->ALFIN1          ----------->GT1<---------CCA1(2)             ----- ----->YAB1              <---------ANAC58  ---------->DOF2---------->DOF2<---------ANAC58 <---------ANAC46   aataactcagatgtagtaagtttgatggtgtgggagctggtatctgaaagaaggggctaataaagcttatatctggtgtgagagaataagtagaggggag  5172800                   ------->MYC2                   ------->MYC4                   <-------MYC4                   <-------PIF5                   ------->PIF5                   <-------MYC3                   ------->MYC3                   <-------MYC2                   -------->ABF1                  <---------TGA1a                  --------->TGA1a                  --------->O2                  --------->ANAC46                  --------->ANAC55(2)                  <---------O2                <---------ALFIN1               <---------REM1(2)                                 <---------At4g35610      ------>ZmHOX2a(1)         --------->MYB52(2)        ------>ZmHOX2a(1)                         -  <---------ARR14(2) <-----------HVH21                  ------>ZmHOX2a(2)                         <--  --------->ARR14(2)--------->ALFIN1                   <------ZmHOX2a(2)                          --- ============HOX2a_HOX2a      <---------MYB52(1)      <---------ARR14(2)                         ---- ----ZmHOX2a(2)-------->P    --------->TOE2(3)        --------->ARR14(2)    <----------DOF2     ----- ---->GLK1(1)  =============MYC_MYB              <------------CBF<---------ZAT2                 <----   atcgaatcctgagtgcctacacgtggcacagcgttagtggctcttacatgttattggatcctcttgcagctagttgagcttttgggaaggcctatgtgta  5172900            ----------->GT1          <---------ZAT14          ---------->DOF2       ----------->GT1     ----------->GT1     <---------ANAC46----------->GT1    --------->DAG2 <---------ANAC46   <---------ZAT14 ----------->GT1                                         <---------TOE2(3)   ---------->DOF2--------->DAG2          ------->TEIL                     <---------TOE2(2) ---------->GT1  <---------ZAT14        <---------ZAT18                    <---------TOE1(3) -------ANAC46   ---------->DOF2     ------>ZmHOX2a(1)       <-----------HVH21   <-----------GT1 -------->GT1 ----------->GT1     ------>ZmHOX2a(1)     --------->PCF2     <---------TOE1(2) ----->DAG2 <---------ANAC46--------->ARR11(3)         <---------PCF2   <---------ANAC58 ----->DOF2--------->DAG2   <---------ARR11(3)        ----------->HVH21 <---------ANAC46            < -----ZAT14<-----------------------TaNAC69(2)      <---------MYB52(1)   <---------ANAC58          ---   aagtgtaaagtgtaaagtgtaaagtgtaaacatctcctcctatgcacttcttcgttgggacccgttcacaagttgcttaggttttgccacttgccatact  5173000                     --------->LBD16                                       <-----------GT1                    <---------ANAC46                                    <----------DOF2                   <---------LBD16               ----------->GT1 <---------CCA1(2)               --------->ALFIN1           --------->ANAC58     <---------ANAC58                     -               <---------------AtSPL8     --------->ANAC58     <---------ANAC58                    <-           <------ZmHOX2a(1)       <-----------RAV1(1)       <-----------GT1                  <------ --------->GLK1(2)--------->PCF5   --------->ALFIN1   <---------YAB1   <---------DAG2         <------ ---------GLK1(2)<---------SPL7    <---------REM1(1)<-----------GT1 <-----------GT1           ------- -------->ARR10<---------------AtSPL3     --------->ANAC46 <---------AHL20(2)              ------->TEIL   gagattctcaagaggaagtggtccggataatgccatggtgttgcaggcaaattgttactattttttcgtatcaccttttactattttcatatgcatttta  5173100              --------->ARR14(1)           ----------->ARR10     ---------->DOF2 <---------TOE2(3) --------->DOF2<-------TEIL<----------DOF2                                     <---------YAB1 --------AHL20(2)     <-----------GT1                            ----------->RAV1(2)    <---------TOE1(3) ---AHL20(1) --------->ARR14(2)                              <-------TEIL   <---------YAB1 ---AHL20(2) <---------ARR14(2)  <----------DOF2   ----------->GT1 ------>ZmHOX2a(1)    *TSS -->AHL20(2) <---------GLK1(2) ---------->ID1      <---------MYB46(3) ------->TEIL <---------ZAT6   -   tttaaagtaaagctagattcgttttatctctttggctttatacaaagtttaagtggttgaatattcatcctgaaccttgtgattactgttcaggtatctc  5173200                                             <---------WRKY18(1)                                            --------->WRKY45                                            --------->WRKY38(1)                                          <---------ANAC58                                          <---------ANAC58                                ------>MYB83--------->WRKY12                                ------>MYB46(1)                               <---------ARR14(2)                <-----------HVH21   <---------MYB52(1)                   ----------->GT1  <---------MYB46(3) -------->LBD16<---------ZAT6 --------->MYB46(3)           <---------TOE2(3)  --------->ARR14(2)    <   tccgagtaaggcttcgagtgtcagagccatcaccaactgttatgggttgactacctatacaaaggttagacaaactcgtgaatatggtatagttgttgtt  5173300  Previous    Next  AGI:  At5g15840.1    Description:  CO (CONSTANS); transcription factor/ zinc ion binding. Identical to Zinc finger protein CONSTANS (CO) [Arabidopsis Thaliana] (GB:Q39057); similar to COL1 (CONSTANS-LIKE 1), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15850.1); similar to constans [Brassica napus] (GB:AAC27694.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 5171185    to: 5172761    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g15845.1    Description:  other RNA Range:  from: 5173188    to: 5177892    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version