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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                            --------->ATHB12
                                                           <---------AHL20(2)
                                                           <---------YAB1<---------ICU4
           <---------MYB52(1)                             --------->AHL20(1)
           --------->DOF5.7(2)                            <---------AHL20(2)       --------->HSFB2a(2)
          <-------GAMYB >>>>>>>ZML2      <---------ANAC46 <---------AHL20(1)       <---------HSFB2a(2)
         <---------MYB46(3)          ------->TEIL         --------->AHL20(2)<-----------GT1
        ---------->ID1  --------->HSFB2a(2)             <-----------------AGL3 <----------DOF2
     <---------AtMYB61  <---------HSFB2a(2)         ----------->GT1    <----------DOF2    --------->TOE2(3)
 
ttgaaattttggtcgttatcgagagttctagtagattatgcattttgtgtaacaagtgtaatataattgggaccctttattactttctataaaacttaat  5140700
                            --------->YAB1
                            --------->AHL20(2)                                     <------ZmHOX2a(2)
                         --------->WOX13(1)                                       <---------ARR11(3)
            <------ZmHOX2a(2)                                      <------ZmHOX2a(2)
           <---------ARR11(3)       <---------ATHB12    <-------TEIL              --------->ARR11(3)
           --------->ARR11(3)     --------->WOX13(1) <---------At4g35610        ----------->ARR10
  <-----------GT1  <---------MYB52(1)                --------->At4g35610--------->YAB1        <-----
 
tcttttaacctatagatcacccgtttgtcaattatatcaatcaagggtcccttattagctgcattttccgatcgataatagagaagatcatccaatgctt  5140800
                --------->AtMYB61
               --------->bZIP60(2)                                         <---------ATHB12
               --------->bZIP60(1)                                  <---------ANAC58
               <---------bZIP60(1)                           <---------AHL20(2)               <-----
            ----------->HVH21                               --------->AHL20(1)        <---------ANAC58
          --------->ANAC46                                  <---------AHL20(1)        <---------ANAC46
 <---------ATHB12                                           <---------ARR11(3)        <---------ANAC58
-----DOF2 --------->AtLEC2                       ----------->GT1    <---------ANAC58<---------YAB1 -
 
tacaatcacttccatgcgacctcacatacaattacttccattgcatagtatgtagtaaaactatatattttgcttccaatggatttgatgcttgtttatg  5140900
                                                                                                   <
                                                                                                   -
                                                                                             -------
                                                                     --------->ARR14(2)     <-------
                                                                    <---------MYB52(1) <--------HAHB4
                       <---------TOE2(3)                       --------->ARR14(2)      --------->ATHB51
                       <---------TOE1(3)                       <---------ARR14(2)      <---------ICU4
                      <-----------GT1                   <---------MYB52(1)            <---------ATHB12
----YAB1     --------->GLK1(2)                         --------->TOE2(3) ------>ZmHOX2a(1)  <-------
---------->ARR10<----------DOF2                ---------->DOF2<---------GLK1(1)       --------->ICU4
 
cttagaacttccaaataatcttttttaacgtagcgaattgattttgcattcaaagcacccttagtaaatccgtttcctagtctagtcccataattaaggt  5141000
                                ----------->GT1
                               ----------->GT1                                                     -
---------ARR11(3)          --------->YAB1                                                          <
-------->ARR11(3)       <---------ICU4                                                  <<<<<<<<<ARR2
---->GT1                --------->YAB1                  --------->ARR11(3)              <---------ATHB12
--TOE2(3)              --------->ICU4---------->DOF2    <---------ARR11(3)          ------------>CBF
--TOE1(3)           ----------------->AGL2     --------->ANAC46  <---------YAB1 --------->ANAC46  <-
 
aaaatctacatgggcttctcaggcccataatgagaagtttaaaaggctcaactcaacaagatttagttatgctaaggccttacaagttacaatcaaacag  5141100
                                                                         <---------TOE1(3)
                                                                         <---------TOE2(3)
                                                                   <---------------AGL15
                                                                   --------------->AGL15
                                                                  ----------------->AGL1
        <-----------HVH21                                         <-----------------AGL2
      --------->DEAR3(2)                    <---------GLK1(1)    ------>NtERF2
     *TSS                        ------>ZmHOX2a(1)            --------->At4g35610
-------->ARR14(2)           ------>ZmHOX2a(1)        <-----------GT1--------->WOX13(1)
---------ARR14(2) <---------At4g35610    <---------TOE2(3)    <---------At4g35610
-----ZmHOX2a(1)   --------->At4g35610    <---------TOE1(3)    ------>ZmHOX2a(1)                   <-
 
aggatagggaccgtcggatttatctgacttcctctccttcgattagggtttctgaattactactcctctgccaattagggtttaagcctctccagcattt  5141200
                     ---------->CDC5
                   --------->TOE2(3)
                 ------->TEIL                              <------NtERF2
                <---------GLK1(2)                         ------>NtERF2
                --------->ARR14(2)                       <---------DEAR3(1)
                <---------ARR14(2)                       --------->ANAC46
                <---------ARR11(3)                     <---------ATERF1(1)
              --------->ANAC58                        <---------LBD16
           --------->TOE1(2)                ------>ZmHOX2a(1)              <---------TOE2(2)
   --------->At4g35610                     --------->TOE2(3)--------->DEAR3(1)
   <---------At4g35610  --------->DEAR3(1)<---------ICU4--------->LBD16    <---------TOE1(2)
---------DOF2 --------->ANAC58 <---------ICU4  --------->ZAT6             <-----------RAV1(2) <-----
 
tctttcagctcaaacccaagaacctcatcgccgattatttcttcatccttactctatcccgcgccgattaatctctctcaggtaaactacttcaatttta  5141300
                                                                                          <---------ICU4
                                                                                          --------->ATHB12
                                <-----------RAV1(1)                                       --------->ATHB51
                               <---------TOE1(2)                                          -------->ATHB1
                               <---------TOE2(2)                            <---------GLK1(1)
                     --------->YAB1                                         --------->GLK1(1)
                    ----------->GT1                                       <------ZmHOX2a(1)
                   <---------------------WRI1                   --------->YAB1           --------->ICU4
                   <---------WOX13(1)                          <---------YAB1     <---------ARR14(2)
            <---------ZAT14   ------>ZmHOX2a(1)  --------->KAN4(1)     <---------LBD16   <---------ATHB51
------GT1   --------->ZAT14  --------->TOE2(2)  <---------KAN4(2) <---------YAB1  --------->ARR14(2)
 
ctcatagactaattgtacagagattgataaatcctatgttgttcccattagaatgttcaagggtttatgattattcaggatttcaaatctgaattattgg  5141400
                                           <---------TOE2(1)
                                           <---------TOE1(1)
                                        <-----------HVH21
                                        <---------SPL7
                                       <---------ANAC58
                                       <---------ANAC58
              <---------ANAC46   <---------ICU4                                                   <-
              <---------ANAC58  <---------YAB1         --------->At4g35610                --------->AHL20(2)
              <---------ANAC58--------->YAB1        ---------->DOF2                     ----------->GT1
      --------->TOE2(3)    <---------CCA1(2)<---------HSFB2a(2)                       ---------->DOF2
      --------->TOE1(3)  <---------AtLEC2 --------->SPL7      --------->YAB1      ---------->DOF2 --
 
acaaataaaccctaatttcgtataatttgcatatcatcagtaccgtccgagatgagaaagctcaagtatcacgagaagaagcttataaagaaagtaaatt  5141500
                                                                                          <---------
                                                                                    <------MYB46(1)
                                         <---------ANAC55(1)                       --------->MYB59
                                         <---------ANAC58                          --------->MYB111(1)
                           --------->LBD16  ------->TEIL                           <---------------AtSPL3
                          --------->HSFB2a(2)          ------->MYC3            --------->DAG2
                ----------->GT1          <---------ANAC46                     ---------->DOF2
        ---------->DOF2   <---------HSFB2a(2)          <-------MYC3   <---------ICU4<------MYB83
     ----------->GT1   --------->MYB52(1)--------->ANAC55(2)          --------->ATHB12   --------->TOE2(3)
--------------AGL15   ------->GAMYB      <---------ANAC55(2)         --------->ICU4--------------->AtSPL8
------------->AGL15  --------->MYB46(3)  <---------ANAC58            <---------YAB1<---------------AtSPL8
 
tcttagaatggaaaagagaaggtaaccatcgggaaaacgagattacgtatcgataccacatgggctctcgtgatgattacaaaaagttggtacctttatt  5141600
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AGI:  At5g15750.1   
Description:  RNA-binding S4 domain-containing protein. similar to hypothetical protein [Cleome spinosa] (GB:ABD96845.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4; (InterPro:IPR001912)
Range:  from: 5141106    to: 5142869    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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