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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ATHB12
<---------
AHL20(2)
<---------
YAB1
<---------
ICU4
<---------
MYB52(1)
--------->
AHL20(1)
--------->
DOF5.7(2)
<---------
AHL20(2)
--------->
HSFB2a(2)
<-------
GAMYB
>>>>>>>
ZML2
<---------
ANAC46
<---------
AHL20(1)
<---------
HSFB2a(2)
<---------
MYB46(3)
------->
TEIL
--------->
AHL20(2)
<-----------
GT1
---------->
ID1
--------->
HSFB2a(2)
<-----------------
AGL3
<----------
DOF2
<---------
AtMYB61
<---------
HSFB2a(2)
----------->
GT1
<----------
DOF2
--------->
TOE2(3)
ttgaaattttggtcgttatcgagagttctagtagattatgcattttgtgtaacaagtgtaatataattgggaccctttattactttctataaaacttaat
5140700
--------->
YAB1
--------->
AHL20(2)
<------
ZmHOX2a(2)
--------->
WOX13(1)
<---------
ARR11(3)
<------
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
<---------
ATHB12
<-------
TEIL
--------->
ARR11(3)
--------->
ARR11(3)
--------->
WOX13(1)
<---------
At4g35610
----------->
ARR10
<-----------
GT1
<---------
MYB52(1)
--------->
At4g35610
--------->
YAB1
<-----
tcttttaacctatagatcacccgtttgtcaattatatcaatcaagggtcccttattagctgcattttccgatcgataatagagaagatcatccaatgctt
5140800
--------->
AtMYB61
--------->
bZIP60(2)
<---------
ATHB12
--------->
bZIP60(1)
<---------
ANAC58
<---------
bZIP60(1)
<---------
AHL20(2)
<-----
----------->
HVH21
--------->
AHL20(1)
<---------
ANAC58
--------->
ANAC46
<---------
AHL20(1)
<---------
ANAC46
<---------
ATHB12
<---------
ARR11(3)
<---------
ANAC58
-----
DOF2
--------->
AtLEC2
----------->
GT1
<---------
ANAC58
<---------
YAB1
-
tacaatcacttccatgcgacctcacatacaattacttccattgcatagtatgtagtaaaactatatattttgcttccaatggatttgatgcttgtttatg
5140900
<
-
-------
--------->
ARR14(2)
<-------
<---------
MYB52(1)
<--------
HAHB4
<---------
TOE2(3)
--------->
ARR14(2)
--------->
ATHB51
<---------
TOE1(3)
<---------
ARR14(2)
<---------
ICU4
<-----------
GT1
<---------
MYB52(1)
<---------
ATHB12
----
YAB1
--------->
GLK1(2)
--------->
TOE2(3)
------>
ZmHOX2a(1)
<-------
---------->
ARR10
<----------
DOF2
---------->
DOF2
<---------
GLK1(1)
--------->
ICU4
cttagaacttccaaataatcttttttaacgtagcgaattgattttgcattcaaagcacccttagtaaatccgtttcctagtctagtcccataattaaggt
5141000
----------->
GT1
----------->
GT1
-
---------
ARR11(3)
--------->
YAB1
<
-------->
ARR11(3)
<---------
ICU4
<<<<<<<<<
ARR2
---->
GT1
--------->
YAB1
--------->
ARR11(3)
<---------
ATHB12
--
TOE2(3)
--------->
ICU4
---------->
DOF2
<---------
ARR11(3)
------------>
CBF
--
TOE1(3)
----------------->
AGL2
--------->
ANAC46
<---------
YAB1
--------->
ANAC46
<-
aaaatctacatgggcttctcaggcccataatgagaagtttaaaaggctcaactcaacaagatttagttatgctaaggccttacaagttacaatcaaacag
5141100
<---------
TOE1(3)
<---------
TOE2(3)
<---------------
AGL15
--------------->
AGL15
----------------->
AGL1
<-----------
HVH21
<-----------------
AGL2
--------->
DEAR3(2)
<---------
GLK1(1)
------>
NtERF2
*
TSS
------>
ZmHOX2a(1)
--------->
At4g35610
-------->
ARR14(2)
------>
ZmHOX2a(1)
<-----------
GT1
--------->
WOX13(1)
---------
ARR14(2)
<---------
At4g35610
<---------
TOE2(3)
<---------
At4g35610
-----
ZmHOX2a(1)
--------->
At4g35610
<---------
TOE1(3)
------>
ZmHOX2a(1)
<-
aggat
agggaccgtcggatttatctgacttcctctccttcgattagggtttctgaattactactcctctgccaattagggtttaagcctctccagcattt
5141200
---------->
CDC5
--------->
TOE2(3)
------->
TEIL
<------
NtERF2
<---------
GLK1(2)
------>
NtERF2
--------->
ARR14(2)
<---------
DEAR3(1)
<---------
ARR14(2)
--------->
ANAC46
<---------
ARR11(3)
<---------
ATERF1(1)
--------->
ANAC58
<---------
LBD16
--------->
TOE1(2)
------>
ZmHOX2a(1)
<---------
TOE2(2)
--------->
At4g35610
--------->
TOE2(3)
--------->
DEAR3(1)
<---------
At4g35610
--------->
DEAR3(1)
<---------
ICU4
--------->
LBD16
<---------
TOE1(2)
---------
DOF2
--------->
ANAC58
<---------
ICU4
--------->
ZAT6
<-----------
RAV1(2)
<-----
tctttcagctcaaacccaagaacctcatcgccgattatttcttcatccttactctatcccgcgccgattaatctctctcag
gtaaactacttcaatttta
5141300
<---------
ICU4
--------->
ATHB12
<-----------
RAV1(1)
--------->
ATHB51
<---------
TOE1(2)
-------->
ATHB1
<---------
TOE2(2)
<---------
GLK1(1)
--------->
YAB1
--------->
GLK1(1)
----------->
GT1
<------
ZmHOX2a(1)
<---------------------
WRI1
--------->
YAB1
--------->
ICU4
<---------
WOX13(1)
<---------
YAB1
<---------
ARR14(2)
<---------
ZAT14
------>
ZmHOX2a(1)
--------->
KAN4(1)
<---------
LBD16
<---------
ATHB51
------
GT1
--------->
ZAT14
--------->
TOE2(2)
<---------
KAN4(2)
<---------
YAB1
--------->
ARR14(2)
ctcatagactaattgtacagagattgataaatcctatgttgttcccattagaatgttcaagggtttatgattattcaggatttcaaatctgaattattgg
5141400
<---------
TOE2(1)
<---------
TOE1(1)
<-----------
HVH21
<---------
SPL7
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<---------
ICU4
<-
<---------
ANAC58
<---------
YAB1
--------->
At4g35610
--------->
AHL20(2)
<---------
ANAC58
--------->
YAB1
---------->
DOF2
----------->
GT1
--------->
TOE2(3)
<---------
CCA1(2)
<---------
HSFB2a(2)
---------->
DOF2
--------->
TOE1(3)
<---------
AtLEC2
--------->
SPL7
--------->
YAB1
---------->
DOF2
--
acaaataaaccctaatttcgtataatttgcatatcatcag
taccgtccgag
atgagaaagctcaagtatcacgagaagaagcttataaagaaagtaaatt
5141500
<---------
<------
MYB46(1)
<---------
ANAC55(1)
--------->
MYB59
<---------
ANAC58
--------->
MYB111(1)
--------->
LBD16
------->
TEIL
<---------------
AtSPL3
--------->
HSFB2a(2)
------->
MYC3
--------->
DAG2
----------->
GT1
<---------
ANAC46
---------->
DOF2
---------->
DOF2
<---------
HSFB2a(2)
<-------
MYC3
<---------
ICU4
<------
MYB83
----------->
GT1
--------->
MYB52(1)
--------->
ANAC55(2)
--------->
ATHB12
--------->
TOE2(3)
--------------
AGL15
------->
GAMYB
<---------
ANAC55(2)
--------->
ICU4
--------------->
AtSPL8
------------->
AGL15
--------->
MYB46(3)
<---------
ANAC58
<---------
YAB1
<---------------
AtSPL8
tcttagaatggaaaagagaaggtaaccatcgggaaaacgagattacgtatcgataccacatgggctctcgtgatgattacaaaaa
gttggtacctttatt
5141600
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AGI:
At5g15750.1
Description:
RNA-binding S4 domain-containing protein. similar to hypothetical protein [Cleome spinosa] (GB:ABD96845.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4; (InterPro:IPR001912)
Range:
from: 5141106
to: 5142869
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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