Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                ------>ZmHOX2a(1)                             --------->TOE1(3)                   ==================HOX2a_HOX2a        <-----------------AGL1                   <------ZmHOX2a(2)                 --------->DOF5.7(2)              >>>>>>>>>MYB98                  --------->ARR11(3)                 --------->At5g28300  <------NtERF2                  <---------ARR11(3)                ----------->GT1      <---------MYB46(3)            ==============HOX2a_HOX2a        --------->YAB1             --------->ALFIN1   --------->TOE2(3)     <---------GLK1(2) --------->AtLEC2 ---------->DOF2       ----------->GT1  -- ->HSFB2a(2)------>ZmHOX2a(1)--------->TOE2(3)   --------->GLK1(2)      <---------ANAC46  <-------TEIL   ccatttcttaattcctcacagatcatagattccttaagacaattcattcaaaatcggtaactaaaagggaaatggtggggagattagtaacatacagtga  4702700                                                 --------->ARR11(3)                                                 <---------ARR11(3)                                       --------->ZAT6                                   <---------MYB52(2)                      <------MYB46(1)--------->MYB52(1)                        ------->GAMYB                      <------MYB83--------->ANAC46                           --------->At4g35610                <---------ANAC58  --------->ANAC58                         --------->MYB46(3)            --------->LBD16       --------->ANAC55(1)             --------->AtLEC2 --------->GT1  <---------ANAC58  --------->ANAC58  <----------DOF2   ------>NtERF2        ----------   gaggtaagaagtcccgaggcgagtcggtcttagcacaagtaacagtagagagaactttggtctcgtccatgccgagaacaactgaaccattagcaaagcg  4702800                                  =========================HOX2a_HOX2a                                  ------>ZmHOX2a(2)                                  ======================HOX2a_HOX2a                                 ==========================HOX2a_HOX2a                                 =======================HOX2a_HOX2a                                 <------ZmHOX2a(2)                                <---------ARR14(2)                                --------->ARR14(2)        --------->ATHB12                   <-------                             --------->LBD16              -------->HAHB4                     --------                           ------->MYC3                   <---------ICU4              --------->DEAR3(2)                           <---------LBD16               <---------ATHB12          ----------->HVH21                           <-------MYC3             ------>ZmHOX2a(1)            --------->LBD16                          --------->O2             --------->TOE2(3)            <---------ANAC46     <-----------GT1      --------->ANAC46       ------>ZmHOX2a(1)             <---------LBD16  ----- >DOF2<-----------GT1     <---------O2      <---------GLK1(1)                 ------>ZmHOX2a(1) <----   agcgatttttccagtctcaaacgagaccacgcgggatccgacttcgaattcctccttaaatgattccaaaattttggttcctgcggagaccggcgagtct  4702900                                  --------->ALFIN1                              <-----------RAV1(2)                             <---------At4g35610                             --------->At4g35610                           <------NtERF2                          --------->LBD16                          <------NtERF2                         <---------DEAR3(1)                        <---------LBD16                        --------->SPL7                        --------->ATERF1(1)                       ------>NtERF2                       --------->ATERF1(1)                 --------->AtLEC2                       <------NtERF2                  --------->ANAC46                       <---------ATERF1(1)            --------->ANAC58     --------->ANAC46 ------>NtERF2                   --------->ANAC58   --------->MYB52(1) <---------ATERF1(1)          <---------ZAT14               --------->At4g35610 --------->DEAR3(2)   <---------SPL7 <---------ANAC46--------->ZAT18             <---------At4g35610 --------->MYB46(3)   <---------RAP2.3(1)          --------->ZAT14              --------->GLK1(2) --ARR14(2)          <---------RAP2.6(2)           <---------ZAT18       <------ZmHOX2a(1) ->GLK1(2)           <---------RAP2.3(2)        --------->LBD16        --------->MYB59 ---->HSFB2a(2)      <---------DEAR3(1)   <---------ARR14(2)         --------->ICU4       <---------STY1(2) -----HSFB2a(2)     --------->RAP2.6(3)   --------->ARR14(2)     <------ZmHOX2a(1)        --------->STY1(2)   ggaacagacggagcgaaaccaaggcggccggagcagatggtgcgaaaccccagagcacgccatgcgaggaaattaggaagagaagctgaactagctcgat  4703000                                                                                         <---------TGA1a                                                                                         ============                                                                                         ============                                                                                         <---------ANAC46                                                                                       *TSS                                                                                       --------->ZAT14                                                                                 ------->TEIL                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                              --------->ANAC46                                                                       ----------->GT1 <---------ZAT14                                                                    --------->DAG2   <-----------HVH21                    <-------TEIL                                   ================================bZIP_DOF          <---------bZIP60(1)             --------->LBD16          ---------->DOF2  --------->LBD16          --------->bZIP60(1)            <---------ANAC46      --------->ANAC58  --------->MYB52(1)          <---------TGA2(1)             <---------LBD16        --------->ANAC58------->GAMYB   <-----          --------->TGA2(1)             <-------TEIL         --------->MYB52(1)====================MYC_MYB       ----------->HVH21             --------->CCA1(2)    --------->YAB1    <-----------GT1--------->ALFIN1   tcacaatcgatgacatcacacatacacagagagagtgagagatgcggagaagagagggaatgagaacggaaaagggtttaacgcaccggtgaagtgagga  4703100          ------->GAMYB    ------>NtERF2    <---------RAP2.6(3)   <---------ETT(1)   --------->RAP2.3(3)   --------->RAP2.3(2)                                   --------->ARR14(2)   ----------->HVH21                              <---------DEAR3(2)   --------->DEAR3(1)                             <------MYB46(1)                                ----   --------->DREB2C(2)                            <------MYB83                                  -----   --------->RAP2.6(2)                           <---------------AtSPL3                         -----  --------->RAP2.3(1)                            --------->MYB59                                -----  --------->DEAR3(2)                             --------->MYB52(2)                          -------- <---------At4g35610                             --------->MYB46(2)                         --------- --------->At4g35610                             --------------->AtSPL3                     --------- ============================bZIP_DOF  --------->LBD16   <---------ARR14(2)    <-----------GT1<------ =================MYC_MYB       <---------At4g35610<---------SPL7----------->TBP      --------->TOE2(3) -ZmHOX2a(1)      ---------->DOF2     <---------LBD16--------->SPL7  <---------AHL20(2)  ---------->DOF2   ctgagccgacaacgaaaactaaaagaagggttttagcagtcccggtctggttcggtacggttctgctataaataatcgaatttacaaacattaaaccgac  4703200      ------>ZmHOX2a(2)     <---------GLK1(1)    --------->ARR11(3)    <---------ARR11(3)   --------->YAB1 -->NtERF2                                                                     ------>MYB46(1) ---->ANAC58                                                                   ------>MYB83 ---->ANAC58                                                                 <---------MYB111(2) ---->DEAR3(1)                                                               <---------MYB111(1) ->DEAR3(1)                                                            <-----------GT1 >MYB46(3)           <---------YAB1                    <-------TEIL   <---------AHL20(2) >DEAR3(2)       --------->ARR11(3)                   <---------MYB52(1)<-----------GT1 --------->ANAC58 ---ATERF1(1)    <---------GLK1(2)              <---------ZAT14      --------->YAB1     --------->ANAC58   gcctatgatctctgttttagattttgattcttggacaaaatttcttcaagtataccgttcattttcaacaattttaacacctacttaacccagcaaaact  4703300                                                      --------->ANAC55(2)                                                      <---------ANAC55(2)                                                      --------->ANAC46                             --                                                      --------->ANAC58        --------->ANAC58<------                                                      --------->ANAC58        --------->ANAC58-------                                                    --------->CCA1(2)        --------->WOX13(1)   ---                      <---------DAG2               --------->ARR14(2)     <-----------HVH21   <------                      <----------DOF2              <---------ARR14(2)--------->ARR11(3)       -------                --------->YAB1               <---------ZAT6          <---------ARR14(2)      --------       --------->ARR14(2)             --------->AHL20(2)             <---------ARR11(3)      <-------       <---------ARR14(2)       ------->TEIL <-----------RAV1(1)     --------->ARR14(2)  --------->AHL20(2)   gatattgcaaatcgccattgatcactttttagtgtatgtataaattagtgttggatacgaaactgaaaacagatattgtcactcaaatttttaaaataaa  4703400                                                            <---------AHL20(1)                                                            <---------AHL20(2)                                                          <---------AHL20(2)                                                          <---------YAB1         --------->ANAC58          <---------ARR11(3)    --------->YAB1                --------->ATHB51         --------->ANAC58      --------->TOE2(3)         <---------AHL20(1)            <---------ICU4   --------->ICU4              ------->GAMYB       ------>NtERF2                       --------->ATHB12 --------->GT1                 --------->YAB1     --------->ANAC58                     -------->ATHB1 ---AHL20(1)                  --------->MYB46(3)  --------->ANAC46                    <---------ATHB51 -->AHL20(2)                 ------>MYB46(1)      --------->ANAC58                <---------YAB1 -------->GT1                -------->P          <---------LBD16             <------MYB83 ---AHL20(2)                 ------>MYB83     <-----------GT1<---------YAB1  <------MYB46(1)<-------- -->AHL20(1)            <-----------GT1<-------TEIL--------->LBD16      <-----------RAV1(1) <-------- ->AHL20(2)       --------->TOE2(3)--------->AHL20(1)    --------->AHL20(2)<---------ANAC46 <-------- --AHL20(2)      ----------->GT1   <---------AHL20(1)  --------->ICU4 <---------ANAC46--------->ICU4<   ttggaaaaattaagcaaaaacgtttatttccaaccaaaatattcatataaacccgccaatattatttttgttttgtgttgggttatgaattattgcgagc  4703500                                                                                                   --                                                                                                  <--                               <-----------HVH21                                                  ---                          <------ZmHOX2a(1)                                                       <--                        <---------TOE1(2)                                                         <-- <---------YAB1         --------->LBD16           <----------DOF2                                 <-- -ANAC58               <---------LBD16         --------->ARR11(3)                          ------->TEIL -ANAC58              <-----------------AGL1   <---------ARR11(3)                       <---------ATHB12 -ANAC46              <---------LBD16      <------ZmHOX2a(1)                          --------->WOX13(1) ---------AHL20(1)    ----------------->AGL1  <---------At4g35610             --------->At4g35610 <--   attatttttgtattgttcccaattcccaggaatggtcagacaagaggaagctctttgaactgtgttttgagcttggaggctactgcatcaatgaactctt  4703600  Previous    Next  AGI:  At5g14580.1    Description:  polyribonucleotide nucleotidyltransferase, putative. similar to RIF10 (RESISTANT TO INHIBITION WITH FSM 10), 3'-5'-exoribonuclease/ RNA binding / nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G03710.1); similar to hypothetical protein OsI_007938 [Oryza sativa (indica cultivar-group)] (GB:EAY86705.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14733.1); similar to putative polyribonucleotide nucleotidyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD21450.1); contains InterPro domain Polyribonucleotide nucleotidyltransferase; (InterPro:IPR012162); contains InterPro domain K Homology; (InterPro:IPR004087); con Range:  from: 4697243    to: 4703087    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14590.1    Description:  isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative. similar to ICDH, isocitrate dehydrogenase (NADP+) [Arabidopsis thaliana] (TAIR:AT1G54340.1); similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G65930.1); similar to NADP-specific isocitrate dehydrogenase [Lupinus albus] (GB:BAC77065.1); similar to isocitrate dehydrogenase (NADP+) [Nicotiana tabacum] (GB:CAA65504.1); similar to isocitrate dehydrogenase (NADP+) [Nicotiana tabacum] (GB:CAA65503.1); contains InterPro domain Isocitrate dehydrogenase NADP-dependent, eukaryotic; (InterPro:IPR004790); c Range:  from: 4703301    to: 4706741    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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